| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_031058 |
Definition |
Pseudomonas phage NP1, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Nipunavirus. |
DB of origin |
REFSEQ |
Length |
58566 |
Host Name |
Pseudomonas |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
74 |
%GC |
58.39 |
Number of singletons |
0 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009285816.1 | NC_031058_p5 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 2307 | 3635 |
| YP_009285832.1 | NC_031058_p21 | virion structural protein | phrog_687 | structural protein | head and packaging | 1 | 17204 | 18724 |
| YP_009285885.1 | NC_031058_p74 | hypothetical protein | phrog_21599 | unknown function | unknown function | 1 | 58264 | 58518 |
| YP_009285866.1 | NC_031058_p55 | deoxyuridine 5'-triphosphate nucleotide hydrolase | phrog_135 | dUTPase | DNA, RNA and nucleotide metabolism | -1 | 44746 | 45228 |
| YP_009285874.1 | NC_031058_p63 | hypothetical protein | phrog_4301 | unknown function | unknown function | 1 | 51272 | 51700 |
| YP_009285837.1 | NC_031058_p26 | hypothetical protein | phrog_1196 | tail assembly chaperone | tail | 1 | 22465 | 22668 |
| YP_009285812.1 | NC_031058_p1 | lytic transglycosylase | phrog_4928 | unknown function | unknown function | 1 | 127 | 651 |
| YP_009285825.1 | NC_031058_p14 | virion structural protein | phrog_161 | head closure Hc1 | connector | 1 | 10676 | 11059 |
| YP_009285820.1 | NC_031058_p9 | major head protein | phrog_247 | major head protein | head and packaging | 1 | 7431 | 8465 |
| YP_009285882.1 | NC_031058_p71 | ATP-dependent DNA helicase | phrog_1967 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 56226 | 57674 |
| YP_009285875.1 | NC_031058_p64 | endonuclease | phrog_1183 | endonuclease V N-glycosylase UV repair enzyme | DNA, RNA and nucleotide metabolism | 1 | 51691 | 52182 |
| YP_009285815.1 | NC_031058_p4 | terminase small subunit | phrog_51 | terminase small subunit | head and packaging | 1 | 1864 | 2310 |
| YP_009285872.1 | NC_031058_p61 | hypothetical protein | phrog_25433 | unknown function | unknown function | 1 | 50119 | 50751 |
| YP_009285857.1 | NC_031058_p46 | DNA topoisomerase | phrog_54 | DksA-like zinc-finger protein | other | -1 | 39333 | 39524 |
| YP_009285865.1 | NC_031058_p54 | hypothetical protein | phrog_2480 | unknown function | unknown function | -1 | 44285 | 44737 |
| YP_009285831.1 | NC_031058_p20 | tail length tape-measure protein | phrog_3336 | tail length tape measure protein | tail | 1 | 14263 | 17193 |
| YP_009285879.1 | NC_031058_p68 | ribonucleotide reductase of class II | phrog_367 | ribonucleotide reductase | DNA, RNA and nucleotide metabolism | 1 | 53469 | 55364 |
| YP_009285823.1 | NC_031058_p12 | hypothetical protein | phrog_21641 | virion structural protein | head and packaging | 1 | 9828 | 10160 |
| YP_009285817.1 | NC_031058_p6 | portal protein | phrog_145 | portal protein | head and packaging | 1 | 3648 | 5204 |
| YP_009285834.1 | NC_031058_p23 | virion structural protein | phrog_1082 | tail assembly protein | tail | 1 | 19737 | 21419 |
| YP_009285829.1 | NC_031058_p18 | hypothetical protein | phrog_3817 | tail chaperonin | tail | 1 | 13616 | 13834 |
| YP_009285862.1 | NC_031058_p51 | DNA ligase | phrog_114 | ATP-dependent DNA ligase | DNA, RNA and nucleotide metabolism | -1 | 42199 | 43101 |
| YP_009285881.1 | NC_031058_p70 | hypothetical protein | phrog_21857 | unknown function | unknown function | 1 | 55903 | 56133 |
| YP_009285853.1 | NC_031058_p42 | hypothetical protein | phrog_27908 | unknown function | unknown function | -1 | 35709 | 35882 |
| YP_009285880.1 | NC_031058_p69 | hypothetical protein | phrog_244 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 55442 | 55903 |
| YP_009285836.1 | NC_031058_p25 | virion structural protein | phrog_1180 | tail assembly chaperone | tail | 1 | 22235 | 22468 |
| YP_009285877.1 | NC_031058_p66 | nucleotide triphosphate hydrolase | phrog_10855 | hydrolase | other | 1 | 52451 | 52984 |
| YP_009285844.1 | NC_031058_p33 | replicative clamp | phrog_947 | DNA polymerase processivity factor | DNA, RNA and nucleotide metabolism | -1 | 28505 | 29458 |
| YP_009285858.1 | NC_031058_p47 | hypothetical protein | phrog_2300 | unknown function | unknown function | -1 | 39884 | 40429 |
| YP_009285855.1 | NC_031058_p44 | DNA helicase | phrog_16 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 36601 | 38376 |
| YP_009285850.1 | NC_031058_p39 | queuosinebiosynthesis radical SAM | phrog_2076 | QueE-like radical SAM domain | moron, auxiliary metabolic gene and host takeover | -1 | 33629 | 34336 |
| YP_009285870.1 | NC_031058_p59 | hypothetical protein | phrog_26940 | unknown function | unknown function | 1 | 49146 | 49310 |
| YP_009285821.1 | NC_031058_p10 | hypothetical protein | phrog_11997 | unknown function | unknown function | 1 | 8531 | 9040 |
| YP_009285843.1 | NC_031058_p32 | DNA polymerase B region | phrog_1252 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 26273 | 28453 |
| YP_009285813.1 | NC_031058_p2 | hypothetical protein | phrog_785 | holin | lysis | 1 | 746 | 1111 |
| YP_009285845.1 | NC_031058_p34 | tRNA ribotransferase | phrog_887 | queuine tRNA-ribosyltransferase | moron, auxiliary metabolic gene and host takeover | -1 | 29458 | 30396 |
| YP_009285848.1 | NC_031058_p37 | 6-carboxytetrahydropterin synthase | phrog_2389 | QueD-like 6-pyruvoyl-tetrahydropterin synthase | moron, auxiliary metabolic gene and host takeover | -1 | 31798 | 32220 |
| YP_009285859.1 | NC_031058_p48 | ATPase | phrog_124 | Sak4-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 40435 | 41160 |
| YP_009285822.1 | NC_031058_p11 | hypothetical protein | phrog_17843 | unknown function | unknown function | 1 | 9114 | 9824 |
| YP_009285873.1 | NC_031058_p62 | hypothetical protein | phrog_17558 | unknown function | unknown function | 1 | 50754 | 51272 |
| YP_009285814.1 | NC_031058_p3 | hypothetical protein | phrog_5975 | unknown function | unknown function | 1 | 1089 | 1652 |
| YP_009285856.1 | NC_031058_p45 | exonuclease | phrog_1990 | Cas4-domain exonuclease | DNA, RNA and nucleotide metabolism | -1 | 38373 | 39305 |
| YP_009285835.1 | NC_031058_p24 | FAD/FMN-containing dehydrogenase | phrog_778 | tail assembly protein | tail | 1 | 21416 | 22225 |
| YP_009285878.1 | NC_031058_p67 | hypothetical protein | phrog_21505 | unknown function | unknown function | 1 | 52981 | 53403 |
| YP_009285830.1 | NC_031058_p19 | virion structural protein | phrog_169 | tail completion or Neck1 protein | connector | 1 | 13835 | 14263 |
| YP_009285838.1 | NC_031058_p27 | virion structural protein | phrog_1101 | tail protein | tail | 1 | 22655 | 24832 |
| YP_009285819.1 | NC_031058_p8 | hypothetical protein | phrog_206 | head scaffolding protein | head and packaging | 1 | 6466 | 7281 |
| YP_009285867.1 | NC_031058_p56 | primase/helicase | phrog_3022 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 45322 | 47772 |
| YP_009285842.1 | NC_031058_p31 | hypothetical protein | phrog_12453 | unknown function | unknown function | -1 | 25807 | 26085 |
| YP_009285852.1 | NC_031058_p41 | hypothetical protein | phrog_7864 | unknown function | unknown function | -1 | 35048 | 35719 |
| YP_009285841.1 | NC_031058_p30 | hypothetical protein | phrog_6168 | unknown function | unknown function | -1 | 25538 | 25744 |
| YP_009285860.1 | NC_031058_p49 | hypothetical protein | phrog_6247 | DNA topoisomerase | DNA, RNA and nucleotide metabolism | -1 | 41160 | 42062 |
| YP_009285827.1 | NC_031058_p16 | major tail structural protein | phrog_290 | minor tail protein | tail | 1 | 11471 | 13000 |
| YP_009285847.1 | NC_031058_p36 | GTP cyclohydrolase | phrog_2197 | GTP cyclohydrolase | other | -1 | 30895 | 31788 |
| YP_009285826.1 | NC_031058_p15 | peptidoglycan binding protein | phrog_179 | tail terminator | connector | 1 | 11056 | 11466 |
| YP_009285851.1 | NC_031058_p40 | hypothetical protein | phrog_18634 | unknown function | unknown function | -1 | 34427 | 34951 |
| YP_009285828.1 | NC_031058_p17 | structural protein | phrog_313 | Tail assembly chaperone | tail | 1 | 13059 | 13478 |
| YP_009285869.1 | NC_031058_p58 | hypothetical protein | phrog_20983 | unknown function | unknown function | -1 | 48102 | 48746 |
| YP_009285833.1 | NC_031058_p22 | virion structural protein | phrog_687 | structural protein | head and packaging | 1 | 18734 | 19735 |
| YP_009285824.1 | NC_031058_p13 | virion structural protein | phrog_477 | head-tail adaptor Ad1 | connector | 1 | 10160 | 10672 |
| YP_009285849.1 | NC_031058_p38 | glutamine amidotransferases class-II | phrog_10428 | L-glutamine-D-fructose-6-phosphate aminotransferase | other | -1 | 32225 | 33625 |
| YP_009285818.1 | NC_031058_p7 | morphogenesis protein | phrog_241 | head morphogenesis | head and packaging | 1 | 5208 | 6407 |
| YP_009285840.1 | NC_031058_p29 | hypothetical protein | phrog_18970 | unknown function | unknown function | -1 | 25201 | 25566 |
| YP_009285871.1 | NC_031058_p60 | hypothetical protein | phrog_3633 | unknown function | unknown function | 1 | 49335 | 49637 |
| YP_009285876.1 | NC_031058_p65 | znf domain containing protein | phrog_4276 | unknown function | unknown function | 1 | 52179 | 52466 |
| YP_009285884.1 | NC_031058_p73 | hypothetical protein | phrog_24261 | unknown function | unknown function | 1 | 58106 | 58267 |
| YP_009285864.1 | NC_031058_p53 | ribonuclease H like protein | phrog_531 | Rnase H | DNA, RNA and nucleotide metabolism | -1 | 43840 | 44199 |
| YP_009285861.1 | NC_031058_p50 | hypothetical protein | phrog_22007 | unknown function | unknown function | -1 | 42047 | 42202 |
| YP_009285846.1 | NC_031058_p35 | homing endonuclease | phrog_1035 | endonuclease VII | DNA, RNA and nucleotide metabolism | -1 | 30393 | 30836 |
| YP_009285839.1 | NC_031058_p28 | hypothetical protein | phrog_5363 | unknown function | unknown function | 1 | 24832 | 25188 |
| YP_009285883.1 | NC_031058_p72 | hypothetical protein | phrog_22564 | unknown function | unknown function | 1 | 57763 | 58128 |
| YP_009285854.1 | NC_031058_p43 | hypothetical protein | phrog_21588 | unknown function | unknown function | -1 | 35923 | 36453 |
| YP_009285868.1 | NC_031058_p57 | hypothetical protein | phrog_11967 | unknown function | unknown function | -1 | 47769 | 48011 |
| YP_009285863.1 | NC_031058_p52 | thymidylate synthase | phrog_85 | thymidylate synthase | DNA, RNA and nucleotide metabolism | -1 | 43103 | 43843 |