Genomic map of Pseudomonas phage NP1 (NC_031058)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_031058
Definition
Pseudomonas phage NP1, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Nipunavirus.
DB of origin
REFSEQ
Length
58566
Host Name
Pseudomonas
Host domain
Bacteria
Is prophage?
undef
Number of proteins
74
%GC
58.39
Number of singletons
0
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009285816.1 NC_031058_p5 terminase large subunit phrog_2 terminase large subunit head and packaging 1 2307 3635
YP_009285832.1 NC_031058_p21 virion structural protein phrog_687 structural protein head and packaging 1 17204 18724
YP_009285885.1 NC_031058_p74 hypothetical protein phrog_21599 unknown function unknown function 1 58264 58518
YP_009285866.1 NC_031058_p55 deoxyuridine 5'-triphosphate nucleotide hydrolase phrog_135 dUTPase DNA, RNA and nucleotide metabolism -1 44746 45228
YP_009285874.1 NC_031058_p63 hypothetical protein phrog_4301 unknown function unknown function 1 51272 51700
YP_009285837.1 NC_031058_p26 hypothetical protein phrog_1196 tail assembly chaperone tail 1 22465 22668
YP_009285812.1 NC_031058_p1 lytic transglycosylase phrog_4928 unknown function unknown function 1 127 651
YP_009285825.1 NC_031058_p14 virion structural protein phrog_161 head closure Hc1 connector 1 10676 11059
YP_009285820.1 NC_031058_p9 major head protein phrog_247 major head protein head and packaging 1 7431 8465
YP_009285882.1 NC_031058_p71 ATP-dependent DNA helicase phrog_1967 DNA helicase DNA, RNA and nucleotide metabolism 1 56226 57674
YP_009285875.1 NC_031058_p64 endonuclease phrog_1183 endonuclease V N-glycosylase UV repair enzyme DNA, RNA and nucleotide metabolism 1 51691 52182
YP_009285815.1 NC_031058_p4 terminase small subunit phrog_51 terminase small subunit head and packaging 1 1864 2310
YP_009285872.1 NC_031058_p61 hypothetical protein phrog_25433 unknown function unknown function 1 50119 50751
YP_009285857.1 NC_031058_p46 DNA topoisomerase phrog_54 DksA-like zinc-finger protein other -1 39333 39524
YP_009285865.1 NC_031058_p54 hypothetical protein phrog_2480 unknown function unknown function -1 44285 44737
YP_009285831.1 NC_031058_p20 tail length tape-measure protein phrog_3336 tail length tape measure protein tail 1 14263 17193
YP_009285879.1 NC_031058_p68 ribonucleotide reductase of class II phrog_367 ribonucleotide reductase DNA, RNA and nucleotide metabolism 1 53469 55364
YP_009285823.1 NC_031058_p12 hypothetical protein phrog_21641 virion structural protein head and packaging 1 9828 10160
YP_009285817.1 NC_031058_p6 portal protein phrog_145 portal protein head and packaging 1 3648 5204
YP_009285834.1 NC_031058_p23 virion structural protein phrog_1082 tail assembly protein tail 1 19737 21419
YP_009285829.1 NC_031058_p18 hypothetical protein phrog_3817 tail chaperonin tail 1 13616 13834
YP_009285862.1 NC_031058_p51 DNA ligase phrog_114 ATP-dependent DNA ligase DNA, RNA and nucleotide metabolism -1 42199 43101
YP_009285881.1 NC_031058_p70 hypothetical protein phrog_21857 unknown function unknown function 1 55903 56133
YP_009285853.1 NC_031058_p42 hypothetical protein phrog_27908 unknown function unknown function -1 35709 35882
YP_009285880.1 NC_031058_p69 hypothetical protein phrog_244 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 55442 55903
YP_009285836.1 NC_031058_p25 virion structural protein phrog_1180 tail assembly chaperone tail 1 22235 22468
YP_009285877.1 NC_031058_p66 nucleotide triphosphate hydrolase phrog_10855 hydrolase other 1 52451 52984
YP_009285844.1 NC_031058_p33 replicative clamp phrog_947 DNA polymerase processivity factor DNA, RNA and nucleotide metabolism -1 28505 29458
YP_009285858.1 NC_031058_p47 hypothetical protein phrog_2300 unknown function unknown function -1 39884 40429
YP_009285855.1 NC_031058_p44 DNA helicase phrog_16 DNA helicase DNA, RNA and nucleotide metabolism -1 36601 38376
YP_009285850.1 NC_031058_p39 queuosinebiosynthesis radical SAM phrog_2076 QueE-like radical SAM domain moron, auxiliary metabolic gene and host takeover -1 33629 34336
YP_009285870.1 NC_031058_p59 hypothetical protein phrog_26940 unknown function unknown function 1 49146 49310
YP_009285821.1 NC_031058_p10 hypothetical protein phrog_11997 unknown function unknown function 1 8531 9040
YP_009285843.1 NC_031058_p32 DNA polymerase B region phrog_1252 DNA polymerase DNA, RNA and nucleotide metabolism -1 26273 28453
YP_009285813.1 NC_031058_p2 hypothetical protein phrog_785 holin lysis 1 746 1111
YP_009285845.1 NC_031058_p34 tRNA ribotransferase phrog_887 queuine tRNA-ribosyltransferase moron, auxiliary metabolic gene and host takeover -1 29458 30396
YP_009285848.1 NC_031058_p37 6-carboxytetrahydropterin synthase phrog_2389 QueD-like 6-pyruvoyl-tetrahydropterin synthase moron, auxiliary metabolic gene and host takeover -1 31798 32220
YP_009285859.1 NC_031058_p48 ATPase phrog_124 Sak4-like ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 40435 41160
YP_009285822.1 NC_031058_p11 hypothetical protein phrog_17843 unknown function unknown function 1 9114 9824
YP_009285873.1 NC_031058_p62 hypothetical protein phrog_17558 unknown function unknown function 1 50754 51272
YP_009285814.1 NC_031058_p3 hypothetical protein phrog_5975 unknown function unknown function 1 1089 1652
YP_009285856.1 NC_031058_p45 exonuclease phrog_1990 Cas4-domain exonuclease DNA, RNA and nucleotide metabolism -1 38373 39305
YP_009285835.1 NC_031058_p24 FAD/FMN-containing dehydrogenase phrog_778 tail assembly protein tail 1 21416 22225
YP_009285878.1 NC_031058_p67 hypothetical protein phrog_21505 unknown function unknown function 1 52981 53403
YP_009285830.1 NC_031058_p19 virion structural protein phrog_169 tail completion or Neck1 protein connector 1 13835 14263
YP_009285838.1 NC_031058_p27 virion structural protein phrog_1101 tail protein tail 1 22655 24832
YP_009285819.1 NC_031058_p8 hypothetical protein phrog_206 head scaffolding protein head and packaging 1 6466 7281
YP_009285867.1 NC_031058_p56 primase/helicase phrog_3022 DNA primase DNA, RNA and nucleotide metabolism -1 45322 47772
YP_009285842.1 NC_031058_p31 hypothetical protein phrog_12453 unknown function unknown function -1 25807 26085
YP_009285852.1 NC_031058_p41 hypothetical protein phrog_7864 unknown function unknown function -1 35048 35719
YP_009285841.1 NC_031058_p30 hypothetical protein phrog_6168 unknown function unknown function -1 25538 25744
YP_009285860.1 NC_031058_p49 hypothetical protein phrog_6247 DNA topoisomerase DNA, RNA and nucleotide metabolism -1 41160 42062
YP_009285827.1 NC_031058_p16 major tail structural protein phrog_290 minor tail protein tail 1 11471 13000
YP_009285847.1 NC_031058_p36 GTP cyclohydrolase phrog_2197 GTP cyclohydrolase other -1 30895 31788
YP_009285826.1 NC_031058_p15 peptidoglycan binding protein phrog_179 tail terminator connector 1 11056 11466
YP_009285851.1 NC_031058_p40 hypothetical protein phrog_18634 unknown function unknown function -1 34427 34951
YP_009285828.1 NC_031058_p17 structural protein phrog_313 Tail assembly chaperone tail 1 13059 13478
YP_009285869.1 NC_031058_p58 hypothetical protein phrog_20983 unknown function unknown function -1 48102 48746
YP_009285833.1 NC_031058_p22 virion structural protein phrog_687 structural protein head and packaging 1 18734 19735
YP_009285824.1 NC_031058_p13 virion structural protein phrog_477 head-tail adaptor Ad1 connector 1 10160 10672
YP_009285849.1 NC_031058_p38 glutamine amidotransferases class-II phrog_10428 L-glutamine-D-fructose-6-phosphate aminotransferase other -1 32225 33625
YP_009285818.1 NC_031058_p7 morphogenesis protein phrog_241 head morphogenesis head and packaging 1 5208 6407
YP_009285840.1 NC_031058_p29 hypothetical protein phrog_18970 unknown function unknown function -1 25201 25566
YP_009285871.1 NC_031058_p60 hypothetical protein phrog_3633 unknown function unknown function 1 49335 49637
YP_009285876.1 NC_031058_p65 znf domain containing protein phrog_4276 unknown function unknown function 1 52179 52466
YP_009285884.1 NC_031058_p73 hypothetical protein phrog_24261 unknown function unknown function 1 58106 58267
YP_009285864.1 NC_031058_p53 ribonuclease H like protein phrog_531 Rnase H DNA, RNA and nucleotide metabolism -1 43840 44199
YP_009285861.1 NC_031058_p50 hypothetical protein phrog_22007 unknown function unknown function -1 42047 42202
YP_009285846.1 NC_031058_p35 homing endonuclease phrog_1035 endonuclease VII DNA, RNA and nucleotide metabolism -1 30393 30836
YP_009285839.1 NC_031058_p28 hypothetical protein phrog_5363 unknown function unknown function 1 24832 25188
YP_009285883.1 NC_031058_p72 hypothetical protein phrog_22564 unknown function unknown function 1 57763 58128
YP_009285854.1 NC_031058_p43 hypothetical protein phrog_21588 unknown function unknown function -1 35923 36453
YP_009285868.1 NC_031058_p57 hypothetical protein phrog_11967 unknown function unknown function -1 47769 48011
YP_009285863.1 NC_031058_p52 thymidylate synthase phrog_85 thymidylate synthase DNA, RNA and nucleotide metabolism -1 43103 43843