| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_031060 |
Definition |
Gordonia phage JSwag, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Soupsvirus; unclassified Soupsvirus. |
DB of origin |
REFSEQ |
Length |
52726 |
Host Name |
Gordonia terrae |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
101 |
%GC |
61.91 |
Number of singletons |
3 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009285962.1 | NC_031060_p18 | hypothetical protein | phrog_830 | head-tail connector protein | connector | 1 | 12850 | 13047 |
| YP_009286018.1 | NC_031060_p74 | hypothetical protein | phrog_9751 | unknown function | unknown function | -1 | 42427 | 42600 |
| YP_009285948.1 | NC_031060_p4 | HNH endonuclease | phrog_333 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 2278 | 2574 |
| YP_009285965.1 | NC_031060_p21 | hypothetical protein | phrog_123 | tail terminator | connector | 1 | 13783 | 14193 |
| YP_009285950.1 | NC_031060_p6 | hypothetical protein | phrog_1126 | unknown function | unknown function | 1 | 3082 | 3417 |
| YP_009286015.1 | NC_031060_p71 | hypothetical protein | phrog_762 | unknown function | unknown function | -1 | 40561 | 40977 |
| YP_009286044.1 | NC_031060_p100 | hypothetical protein | phrog_13265 | unknown function | unknown function | -1 | 50609 | 50893 |
| YP_009285981.1 | NC_031060_p37 | hypothetical protein | phrog_383 | unknown function | unknown function | -1 | 26158 | 26547 |
| YP_009285967.1 | NC_031060_p23 | tail assembly chaperone | phrog_330 | tail assembly chaperone | tail | 1 | 14934 | 15317 |
| YP_009286031.1 | NC_031060_p87 | hypothetical protein | phrog_12613 | unknown function | unknown function | -1 | 47405 | 47575 |
| YP_009286028.1 | NC_031060_p84 | SprT-like metallopeptidase | phrog_1006 | unknown function | unknown function | -1 | 46339 | 46806 |
| YP_009285968.1 | NC_031060_p24 | tail assembly chaperone | phrog_3656 | tail assembly chaperone | tail | 1 | 15383 | 15838 |
| YP_009285972.1 | NC_031060_p28 | minor tail protein | phrog_352 | minor tail protein | tail | 1 | 20951 | 21394 |
| YP_009286043.1 | NC_031060_p99 | hypothetical protein | phrog_7225 | unknown function | unknown function | -1 | 50396 | 50605 |
| YP_009285978.1 | NC_031060_p34 | dsDNA partitioning protein | phrog_2639 | Arc-like repressor | transcription regulation | 1 | 25224 | 25538 |
| YP_009285987.1 | NC_031060_p43 | DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 27889 | 29679 |
| YP_009286020.1 | NC_031060_p76 | hypothetical protein | phrog_520 | unknown function | unknown function | -1 | 42802 | 43080 |
| YP_009285969.1 | NC_031060_p25 | tape measure protein | phrog_305 | tail length tape measure protein | tail | 1 | 15741 | 18095 |
| YP_009286032.1 | NC_031060_p88 | hypothetical protein | phrog_15584 | unknown function | unknown function | -1 | 47619 | 47801 |
| YP_009286019.1 | NC_031060_p75 | hypothetical protein | phrog_10900 | unknown function | unknown function | -1 | 42611 | 42805 |
| YP_009285982.1 | NC_031060_p38 | hypothetical protein | phrog_14604 | unknown function | unknown function | -1 | 26549 | 26752 |
| YP_009286041.1 | NC_031060_p97 | hypothetical protein | phrog_14166 | unknown function | unknown function | -1 | 49976 | 50206 |
| YP_009286004.1 | NC_031060_p60 | hypothetical protein | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | -1 | 37122 | 37391 |
| YP_009286021.1 | NC_031060_p77 | hypothetical protein | singleton | unknown function | unknown function | -1 | 43077 | 43232 |
| YP_009285970.1 | NC_031060_p26 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 18105 | 19082 |
| YP_009286011.1 | NC_031060_p67 | hypothetical protein | phrog_13833 | membrane protein | moron, auxiliary metabolic gene and host takeover | -1 | 39719 | 39832 |
| YP_009286027.1 | NC_031060_p83 | hypothetical protein | phrog_14317 | unknown function | unknown function | -1 | 46070 | 46342 |
| YP_009285994.1 | NC_031060_p50 | hypothetical protein | phrog_364 | ribonucleoside reductase class II | DNA, RNA and nucleotide metabolism | -1 | 31940 | 32482 |
| YP_009285958.1 | NC_031060_p14 | scaffolding protein | phrog_233 | head scaffolding protein | head and packaging | 1 | 10739 | 11248 |
| YP_009286045.1 | NC_031060_p101 | hypothetical protein | phrog_21648 | unknown function | unknown function | -1 | 50895 | 51386 |
| YP_009286042.1 | NC_031060_p98 | hypothetical protein | phrog_13636 | unknown function | unknown function | -1 | 50209 | 50394 |
| YP_009285949.1 | NC_031060_p5 | hypothetical protein | phrog_226 | minor tail protein | tail | 1 | 2610 | 3065 |
| YP_009285995.1 | NC_031060_p51 | hypothetical protein | phrog_13800 | membrane protein | moron, auxiliary metabolic gene and host takeover | -1 | 32479 | 32595 |
| YP_009286038.1 | NC_031060_p94 | hypothetical protein | phrog_2554 | unknown function | unknown function | -1 | 48838 | 49566 |
| YP_009286002.1 | NC_031060_p58 | hypothetical protein | phrog_2387 | nucleotide kinase | other | -1 | 36518 | 36952 |
| YP_009285983.1 | NC_031060_p39 | hypothetical protein | phrog_13673 | unknown function | unknown function | -1 | 26752 | 26958 |
| YP_009286037.1 | NC_031060_p93 | hypothetical protein | phrog_13953 | unknown function | unknown function | -1 | 48394 | 48807 |
| YP_009285984.1 | NC_031060_p40 | hypothetical protein | phrog_3771 | unknown function | unknown function | -1 | 26951 | 27199 |
| YP_009285999.1 | NC_031060_p55 | hypothetical protein | phrog_499 | unknown function | unknown function | -1 | 34893 | 35075 |
| YP_009285956.1 | NC_031060_p12 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 8373 | 9833 |
| YP_009285955.1 | NC_031060_p11 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 6679 | 8376 |
| YP_009285990.1 | NC_031060_p46 | hypothetical protein | phrog_690 | unknown function | unknown function | -1 | 30326 | 30553 |
| YP_009285945.1 | NC_031060_p1 | hypothetical protein | phrog_940 | nuclease | DNA, RNA and nucleotide metabolism | 1 | 430 | 1260 |
| YP_009285953.1 | NC_031060_p9 | lysin A | phrog_2998 | endolysin | lysis | 1 | 5392 | 6426 |
| YP_009286026.1 | NC_031060_p82 | hypothetical protein | phrog_13943 | unknown function | unknown function | -1 | 45838 | 46086 |
| YP_009285997.1 | NC_031060_p53 | hypothetical protein | phrog_2046 | unknown function | unknown function | -1 | 34640 | 34831 |
| YP_009286033.1 | NC_031060_p89 | hypothetical protein | phrog_14026 | unknown function | unknown function | -1 | 47805 | 47972 |
| YP_009285975.1 | NC_031060_p31 | minor tail protein | phrog_1223 | nucloid associated Lsr2-like | DNA, RNA and nucleotide metabolism | 1 | 23545 | 23877 |
| YP_009286007.1 | NC_031060_p63 | DNA primase | phrog_360 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 38060 | 38440 |
| YP_009286006.1 | NC_031060_p62 | DNA primase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 37597 | 38229 |
| YP_009285966.1 | NC_031060_p22 | major tail protein | phrog_117 | major tail protein | tail | 1 | 14218 | 14820 |
| YP_009285960.1 | NC_031060_p16 | hypothetical protein | phrog_748 | head-tail connector protein | connector | 1 | 12302 | 12472 |
| YP_009285946.1 | NC_031060_p2 | ADP-ribosyltransferase | phrog_3895 | ADP-ribosyltransferase exoenzyme toxin | moron, auxiliary metabolic gene and host takeover | 1 | 1098 | 1985 |
| YP_009285947.1 | NC_031060_p3 | hypothetical protein | phrog_4491 | unknown function | unknown function | 1 | 1982 | 2281 |
| YP_009286016.1 | NC_031060_p72 | hypothetical protein | phrog_13179 | unknown function | unknown function | -1 | 41010 | 41489 |
| YP_009286017.1 | NC_031060_p73 | DnaB-like helicase | phrog_243 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | -1 | 41532 | 42275 |
| YP_009285954.1 | NC_031060_p10 | holin | phrog_13682 | holin | lysis | 1 | 6436 | 6663 |
| YP_009286035.1 | NC_031060_p91 | hypothetical protein | phrog_1946 | unknown function | unknown function | -1 | 48027 | 48269 |
| YP_009285985.1 | NC_031060_p41 | hypothetical protein | phrog_13791 | unknown function | unknown function | -1 | 27199 | 27423 |
| YP_009285998.1 | NC_031060_p54 | hypothetical protein | singleton | unknown function | unknown function | -1 | 34828 | 34893 |
| YP_009286029.1 | NC_031060_p85 | hypothetical protein | phrog_12580 | unknown function | unknown function | -1 | 46921 | 47217 |
| YP_009285992.1 | NC_031060_p48 | ThyX-like thymidylate synthase | phrog_85 | thymidylate synthase | DNA, RNA and nucleotide metabolism | -1 | 30810 | 31511 |
| YP_009285964.1 | NC_031060_p20 | hypothetical protein | phrog_321 | tail completion or Neck1 protein | connector | 1 | 13402 | 13770 |
| YP_009286025.1 | NC_031060_p81 | immunity repressor | phrog_357 | transcriptional repressor | transcription regulation | -1 | 44919 | 45440 |
| YP_009285996.1 | NC_031060_p52 | ribonucleotide reductase | phrog_367 | ribonucleotide reductase | DNA, RNA and nucleotide metabolism | -1 | 32580 | 34643 |
| YP_009285986.1 | NC_031060_p42 | hypothetical protein | phrog_16184 | unknown function | unknown function | -1 | 27420 | 27875 |
| YP_009285988.1 | NC_031060_p44 | hypothetical protein | phrog_762 | unknown function | unknown function | -1 | 29680 | 30039 |
| YP_009285980.1 | NC_031060_p36 | hypothetical protein | phrog_11556 | unknown function | unknown function | 1 | 25826 | 26008 |
| YP_009285976.1 | NC_031060_p32 | hypothetical protein | phrog_4480 | unknown function | unknown function | 1 | 23874 | 24182 |
| YP_009286010.1 | NC_031060_p66 | endonuclease VII | phrog_2914 | endonuclease VII | DNA, RNA and nucleotide metabolism | -1 | 39277 | 39645 |
| YP_009286008.1 | NC_031060_p64 | hypothetical protein | phrog_13497 | unknown function | unknown function | -1 | 38466 | 38645 |
| YP_009286005.1 | NC_031060_p61 | hypothetical protein | phrog_13334 | unknown function | unknown function | -1 | 37388 | 37600 |
| YP_009285959.1 | NC_031060_p15 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 11281 | 12231 |
| YP_009286013.1 | NC_031060_p69 | hypothetical protein | phrog_478 | site-specific recombination directionality factor RDF | integration and excision | -1 | 39970 | 40368 |
| YP_009285951.1 | NC_031060_p7 | hypothetical protein | phrog_1197 | tail protein | tail | 1 | 3414 | 4406 |
| YP_009286012.1 | NC_031060_p68 | hypothetical protein | phrog_14261 | membrane protein | moron, auxiliary metabolic gene and host takeover | -1 | 39829 | 39924 |
| YP_009285957.1 | NC_031060_p13 | capsid maturation protease | phrog_193 | head maturation protease | head and packaging | 1 | 9830 | 10690 |
| YP_009285952.1 | NC_031060_p8 | hypothetical protein | phrog_356 | minor tail protein | tail | 1 | 4403 | 5071 |
| YP_009285979.1 | NC_031060_p35 | superinfection exclusion protein | phrog_1039 | immunity to superinfection | moron, auxiliary metabolic gene and host takeover | 1 | 25590 | 25829 |
| YP_009286036.1 | NC_031060_p92 | hypothetical protein | phrog_9204 | unknown function | unknown function | -1 | 48269 | 48397 |
| YP_009285971.1 | NC_031060_p27 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 19079 | 20866 |
| YP_009285961.1 | NC_031060_p17 | hypothetical protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 12476 | 12853 |
| YP_009286024.1 | NC_031060_p80 | hypothetical protein | phrog_1562 | unknown function | unknown function | -1 | 44505 | 44903 |
| YP_009285993.1 | NC_031060_p49 | nucleotide pyrophosphohydrolase | phrog_229 | MazG-like pyrophosphatase | other | -1 | 31508 | 31852 |
| YP_009286030.1 | NC_031060_p86 | hypothetical protein | phrog_9830 | unknown function | unknown function | -1 | 47220 | 47405 |
| YP_009286014.1 | NC_031060_p70 | hypothetical protein | phrog_1374 | unknown function | unknown function | -1 | 40379 | 40558 |
| YP_009286001.1 | NC_031060_p57 | phosphoesterase | phrog_221 | metallo-phosphoesterase | other | -1 | 35757 | 36521 |
| YP_009286009.1 | NC_031060_p65 | lysin B | phrog_6187 | unknown function | unknown function | -1 | 38645 | 39280 |
| YP_009286040.1 | NC_031060_p96 | hypothetical protein | phrog_9027 | unknown function | unknown function | -1 | 49776 | 49973 |
| YP_009285977.1 | NC_031060_p33 | dsDNA partitioning protein | phrog_164 | ParA-like partition protein | DNA, RNA and nucleotide metabolism | 1 | 24665 | 25231 |
| YP_009286039.1 | NC_031060_p95 | hypothetical protein | phrog_18197 | unknown function | unknown function | -1 | 49556 | 49699 |
| YP_009286000.1 | NC_031060_p56 | HTH DNA binding domain protein | phrog_354 | sigma-K factor | transcription regulation | -1 | 35059 | 35631 |
| YP_009285989.1 | NC_031060_p45 | hypothetical protein | phrog_517 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 30036 | 30329 |
| YP_009286022.1 | NC_031060_p78 | HNH endonuclease domain protein | phrog_4160 | unknown function | unknown function | -1 | 43259 | 43597 |
| YP_009285974.1 | NC_031060_p30 | Lsr2-like DNA bridging protein | phrog_2689 | minor tail protein | tail | 1 | 21729 | 23441 |
| YP_009286023.1 | NC_031060_p79 | RecB-like exonuclease | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 43660 | 44508 |
| YP_009285991.1 | NC_031060_p47 | hypothetical protein | phrog_1454 | unknown function | unknown function | -1 | 30553 | 30801 |
| YP_009285963.1 | NC_031060_p19 | hypothetical protein | phrog_320 | head closure Hc1 | connector | 1 | 13034 | 13402 |
| YP_009285973.1 | NC_031060_p29 | minor tail protein | phrog_404 | minor tail protein | tail | 1 | 21391 | 21732 |
| YP_009286034.1 | NC_031060_p90 | hypothetical protein | singleton | unknown function | unknown function | -1 | 47977 | 48030 |
| YP_009286003.1 | NC_031060_p59 | hypothetical protein | phrog_4589 | unknown function | unknown function | -1 | 36949 | 37125 |