Genomic map of Gordonia phage JSwag (NC_031060)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_031060
Definition
Gordonia phage JSwag, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Soupsvirus; unclassified Soupsvirus.
DB of origin
REFSEQ
Length
52726
Host Name
Gordonia terrae
Host domain
Bacteria
Is prophage?
undef
Number of proteins
101
%GC
61.91
Number of singletons
3
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009285962.1 NC_031060_p18 hypothetical protein phrog_830 head-tail connector protein connector 1 12850 13047
YP_009286018.1 NC_031060_p74 hypothetical protein phrog_9751 unknown function unknown function -1 42427 42600
YP_009285948.1 NC_031060_p4 HNH endonuclease phrog_333 HNH endonuclease DNA, RNA and nucleotide metabolism 1 2278 2574
YP_009285965.1 NC_031060_p21 hypothetical protein phrog_123 tail terminator connector 1 13783 14193
YP_009285950.1 NC_031060_p6 hypothetical protein phrog_1126 unknown function unknown function 1 3082 3417
YP_009286015.1 NC_031060_p71 hypothetical protein phrog_762 unknown function unknown function -1 40561 40977
YP_009286044.1 NC_031060_p100 hypothetical protein phrog_13265 unknown function unknown function -1 50609 50893
YP_009285981.1 NC_031060_p37 hypothetical protein phrog_383 unknown function unknown function -1 26158 26547
YP_009285967.1 NC_031060_p23 tail assembly chaperone phrog_330 tail assembly chaperone tail 1 14934 15317
YP_009286031.1 NC_031060_p87 hypothetical protein phrog_12613 unknown function unknown function -1 47405 47575
YP_009286028.1 NC_031060_p84 SprT-like metallopeptidase phrog_1006 unknown function unknown function -1 46339 46806
YP_009285968.1 NC_031060_p24 tail assembly chaperone phrog_3656 tail assembly chaperone tail 1 15383 15838
YP_009285972.1 NC_031060_p28 minor tail protein phrog_352 minor tail protein tail 1 20951 21394
YP_009286043.1 NC_031060_p99 hypothetical protein phrog_7225 unknown function unknown function -1 50396 50605
YP_009285978.1 NC_031060_p34 dsDNA partitioning protein phrog_2639 Arc-like repressor transcription regulation 1 25224 25538
YP_009285987.1 NC_031060_p43 DNA polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism -1 27889 29679
YP_009286020.1 NC_031060_p76 hypothetical protein phrog_520 unknown function unknown function -1 42802 43080
YP_009285969.1 NC_031060_p25 tape measure protein phrog_305 tail length tape measure protein tail 1 15741 18095
YP_009286032.1 NC_031060_p88 hypothetical protein phrog_15584 unknown function unknown function -1 47619 47801
YP_009286019.1 NC_031060_p75 hypothetical protein phrog_10900 unknown function unknown function -1 42611 42805
YP_009285982.1 NC_031060_p38 hypothetical protein phrog_14604 unknown function unknown function -1 26549 26752
YP_009286041.1 NC_031060_p97 hypothetical protein phrog_14166 unknown function unknown function -1 49976 50206
YP_009286004.1 NC_031060_p60 hypothetical protein phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism -1 37122 37391
YP_009286021.1 NC_031060_p77 hypothetical protein singleton unknown function unknown function -1 43077 43232
YP_009285970.1 NC_031060_p26 minor tail protein phrog_106 minor tail protein tail 1 18105 19082
YP_009286011.1 NC_031060_p67 hypothetical protein phrog_13833 membrane protein moron, auxiliary metabolic gene and host takeover -1 39719 39832
YP_009286027.1 NC_031060_p83 hypothetical protein phrog_14317 unknown function unknown function -1 46070 46342
YP_009285994.1 NC_031060_p50 hypothetical protein phrog_364 ribonucleoside reductase class II DNA, RNA and nucleotide metabolism -1 31940 32482
YP_009285958.1 NC_031060_p14 scaffolding protein phrog_233 head scaffolding protein head and packaging 1 10739 11248
YP_009286045.1 NC_031060_p101 hypothetical protein phrog_21648 unknown function unknown function -1 50895 51386
YP_009286042.1 NC_031060_p98 hypothetical protein phrog_13636 unknown function unknown function -1 50209 50394
YP_009285949.1 NC_031060_p5 hypothetical protein phrog_226 minor tail protein tail 1 2610 3065
YP_009285995.1 NC_031060_p51 hypothetical protein phrog_13800 membrane protein moron, auxiliary metabolic gene and host takeover -1 32479 32595
YP_009286038.1 NC_031060_p94 hypothetical protein phrog_2554 unknown function unknown function -1 48838 49566
YP_009286002.1 NC_031060_p58 hypothetical protein phrog_2387 nucleotide kinase other -1 36518 36952
YP_009285983.1 NC_031060_p39 hypothetical protein phrog_13673 unknown function unknown function -1 26752 26958
YP_009286037.1 NC_031060_p93 hypothetical protein phrog_13953 unknown function unknown function -1 48394 48807
YP_009285984.1 NC_031060_p40 hypothetical protein phrog_3771 unknown function unknown function -1 26951 27199
YP_009285999.1 NC_031060_p55 hypothetical protein phrog_499 unknown function unknown function -1 34893 35075
YP_009285956.1 NC_031060_p12 portal protein phrog_104 portal protein head and packaging 1 8373 9833
YP_009285955.1 NC_031060_p11 terminase large subunit phrog_9 terminase large subunit head and packaging 1 6679 8376
YP_009285990.1 NC_031060_p46 hypothetical protein phrog_690 unknown function unknown function -1 30326 30553
YP_009285945.1 NC_031060_p1 hypothetical protein phrog_940 nuclease DNA, RNA and nucleotide metabolism 1 430 1260
YP_009285953.1 NC_031060_p9 lysin A phrog_2998 endolysin lysis 1 5392 6426
YP_009286026.1 NC_031060_p82 hypothetical protein phrog_13943 unknown function unknown function -1 45838 46086
YP_009285997.1 NC_031060_p53 hypothetical protein phrog_2046 unknown function unknown function -1 34640 34831
YP_009286033.1 NC_031060_p89 hypothetical protein phrog_14026 unknown function unknown function -1 47805 47972
YP_009285975.1 NC_031060_p31 minor tail protein phrog_1223 nucloid associated Lsr2-like DNA, RNA and nucleotide metabolism 1 23545 23877
YP_009286007.1 NC_031060_p63 DNA primase phrog_360 DNA primase DNA, RNA and nucleotide metabolism -1 38060 38440
YP_009286006.1 NC_031060_p62 DNA primase phrog_47 DNA primase DNA, RNA and nucleotide metabolism -1 37597 38229
YP_009285966.1 NC_031060_p22 major tail protein phrog_117 major tail protein tail 1 14218 14820
YP_009285960.1 NC_031060_p16 hypothetical protein phrog_748 head-tail connector protein connector 1 12302 12472
YP_009285946.1 NC_031060_p2 ADP-ribosyltransferase phrog_3895 ADP-ribosyltransferase exoenzyme toxin moron, auxiliary metabolic gene and host takeover 1 1098 1985
YP_009285947.1 NC_031060_p3 hypothetical protein phrog_4491 unknown function unknown function 1 1982 2281
YP_009286016.1 NC_031060_p72 hypothetical protein phrog_13179 unknown function unknown function -1 41010 41489
YP_009286017.1 NC_031060_p73 DnaB-like helicase phrog_243 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism -1 41532 42275
YP_009285954.1 NC_031060_p10 holin phrog_13682 holin lysis 1 6436 6663
YP_009286035.1 NC_031060_p91 hypothetical protein phrog_1946 unknown function unknown function -1 48027 48269
YP_009285985.1 NC_031060_p41 hypothetical protein phrog_13791 unknown function unknown function -1 27199 27423
YP_009285998.1 NC_031060_p54 hypothetical protein singleton unknown function unknown function -1 34828 34893
YP_009286029.1 NC_031060_p85 hypothetical protein phrog_12580 unknown function unknown function -1 46921 47217
YP_009285992.1 NC_031060_p48 ThyX-like thymidylate synthase phrog_85 thymidylate synthase DNA, RNA and nucleotide metabolism -1 30810 31511
YP_009285964.1 NC_031060_p20 hypothetical protein phrog_321 tail completion or Neck1 protein connector 1 13402 13770
YP_009286025.1 NC_031060_p81 immunity repressor phrog_357 transcriptional repressor transcription regulation -1 44919 45440
YP_009285996.1 NC_031060_p52 ribonucleotide reductase phrog_367 ribonucleotide reductase DNA, RNA and nucleotide metabolism -1 32580 34643
YP_009285986.1 NC_031060_p42 hypothetical protein phrog_16184 unknown function unknown function -1 27420 27875
YP_009285988.1 NC_031060_p44 hypothetical protein phrog_762 unknown function unknown function -1 29680 30039
YP_009285980.1 NC_031060_p36 hypothetical protein phrog_11556 unknown function unknown function 1 25826 26008
YP_009285976.1 NC_031060_p32 hypothetical protein phrog_4480 unknown function unknown function 1 23874 24182
YP_009286010.1 NC_031060_p66 endonuclease VII phrog_2914 endonuclease VII DNA, RNA and nucleotide metabolism -1 39277 39645
YP_009286008.1 NC_031060_p64 hypothetical protein phrog_13497 unknown function unknown function -1 38466 38645
YP_009286005.1 NC_031060_p61 hypothetical protein phrog_13334 unknown function unknown function -1 37388 37600
YP_009285959.1 NC_031060_p15 major capsid protein phrog_10 major head protein head and packaging 1 11281 12231
YP_009286013.1 NC_031060_p69 hypothetical protein phrog_478 site-specific recombination directionality factor RDF integration and excision -1 39970 40368
YP_009285951.1 NC_031060_p7 hypothetical protein phrog_1197 tail protein tail 1 3414 4406
YP_009286012.1 NC_031060_p68 hypothetical protein phrog_14261 membrane protein moron, auxiliary metabolic gene and host takeover -1 39829 39924
YP_009285957.1 NC_031060_p13 capsid maturation protease phrog_193 head maturation protease head and packaging 1 9830 10690
YP_009285952.1 NC_031060_p8 hypothetical protein phrog_356 minor tail protein tail 1 4403 5071
YP_009285979.1 NC_031060_p35 superinfection exclusion protein phrog_1039 immunity to superinfection moron, auxiliary metabolic gene and host takeover 1 25590 25829
YP_009286036.1 NC_031060_p92 hypothetical protein phrog_9204 unknown function unknown function -1 48269 48397
YP_009285971.1 NC_031060_p27 minor tail protein phrog_110 minor tail protein tail 1 19079 20866
YP_009285961.1 NC_031060_p17 hypothetical protein phrog_137 head-tail adaptor Ad1 connector 1 12476 12853
YP_009286024.1 NC_031060_p80 hypothetical protein phrog_1562 unknown function unknown function -1 44505 44903
YP_009285993.1 NC_031060_p49 nucleotide pyrophosphohydrolase phrog_229 MazG-like pyrophosphatase other -1 31508 31852
YP_009286030.1 NC_031060_p86 hypothetical protein phrog_9830 unknown function unknown function -1 47220 47405
YP_009286014.1 NC_031060_p70 hypothetical protein phrog_1374 unknown function unknown function -1 40379 40558
YP_009286001.1 NC_031060_p57 phosphoesterase phrog_221 metallo-phosphoesterase other -1 35757 36521
YP_009286009.1 NC_031060_p65 lysin B phrog_6187 unknown function unknown function -1 38645 39280
YP_009286040.1 NC_031060_p96 hypothetical protein phrog_9027 unknown function unknown function -1 49776 49973
YP_009285977.1 NC_031060_p33 dsDNA partitioning protein phrog_164 ParA-like partition protein DNA, RNA and nucleotide metabolism 1 24665 25231
YP_009286039.1 NC_031060_p95 hypothetical protein phrog_18197 unknown function unknown function -1 49556 49699
YP_009286000.1 NC_031060_p56 HTH DNA binding domain protein phrog_354 sigma-K factor transcription regulation -1 35059 35631
YP_009285989.1 NC_031060_p45 hypothetical protein phrog_517 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 30036 30329
YP_009286022.1 NC_031060_p78 HNH endonuclease domain protein phrog_4160 unknown function unknown function -1 43259 43597
YP_009285974.1 NC_031060_p30 Lsr2-like DNA bridging protein phrog_2689 minor tail protein tail 1 21729 23441
YP_009286023.1 NC_031060_p79 RecB-like exonuclease phrog_69 exonuclease DNA, RNA and nucleotide metabolism -1 43660 44508
YP_009285991.1 NC_031060_p47 hypothetical protein phrog_1454 unknown function unknown function -1 30553 30801
YP_009285963.1 NC_031060_p19 hypothetical protein phrog_320 head closure Hc1 connector 1 13034 13402
YP_009285973.1 NC_031060_p29 minor tail protein phrog_404 minor tail protein tail 1 21391 21732
YP_009286034.1 NC_031060_p90 hypothetical protein singleton unknown function unknown function -1 47977 48030
YP_009286003.1 NC_031060_p59 hypothetical protein phrog_4589 unknown function unknown function -1 36949 37125