Genomic map of Gordonia phage Nymphadora (NC_031061)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_031061
Definition
Gordonia phage Nymphadora, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Nymbaxtervirinae; Nymphadoravirus; Gordonia virus Nymphadora.
DB of origin
REFSEQ
Length
53431
Host Name
Gordonia terrae
Host domain
Bacteria
Is prophage?
undef
Number of proteins
84
%GC
66.55
Number of singletons
7
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009286058.1 NC_031061_p13 hypothetical protein phrog_17334 unknown function unknown function 1 9049 9222
YP_009286059.1 NC_031061_p14 hypothetical protein phrog_3860 tail assembly chaperone tail 1 9285 10189
YP_009286070.1 NC_031061_p25 lysin B phrog_102 endolysin lysis 1 22318 22926
YP_009286110.1 NC_031061_p65 hypothetical protein phrog_7793 unknown function unknown function 1 44577 44726
YP_009286057.1 NC_031061_p12 major tail subunit phrog_3884 major tail protein tail 1 8478 8990
YP_009286122.1 NC_031061_p77 hypothetical protein phrog_37625 unknown function unknown function 1 50386 50916
YP_009286047.1 NC_031061_p2 terminase large subunit phrog_9 terminase large subunit head and packaging 1 498 2222
YP_009286095.1 NC_031061_p50 hypothetical protein phrog_7723 unknown function unknown function 1 38152 38379
YP_009286106.1 NC_031061_p61 hypothetical protein phrog_19094 unknown function unknown function 1 43288 43662
YP_009286102.1 NC_031061_p57 hypothetical protein phrog_1581 unknown function unknown function 1 40719 40961
YP_009286100.1 NC_031061_p55 hypothetical protein phrog_16275 unknown function unknown function 1 40166 40438
YP_009286052.1 NC_031061_p7 head-to-tail connector protein phrog_9538 head-tail connector protein connector 1 6430 6777
YP_009286056.1 NC_031061_p11 head-to-tail connector protein phrog_2595 head-tail connector protein connector 1 8035 8475
YP_009286092.1 NC_031061_p47 hypothetical protein phrog_17511 unknown function unknown function 1 36764 37312
YP_009286128.1 NC_031061_p83 hypothetical protein phrog_10381 unknown function unknown function 1 52737 53045
YP_009286051.1 NC_031061_p6 major capsid protein phrog_10 major head protein head and packaging 1 4693 6342
YP_009286046.1 NC_031061_p1 terminase small subunit phrog_83 terminase small subunit head and packaging 1 56 520
YP_009286121.1 NC_031061_p76 hypothetical protein phrog_14446 unknown function unknown function 1 49886 50389
YP_009286115.1 NC_031061_p70 hypothetical protein phrog_10621 unknown function unknown function 1 47387 47788
YP_009286062.1 NC_031061_p17 tape measure protein phrog_7025 tail length tape measure protein tail 1 10512 16940
YP_009286054.1 NC_031061_p9 head-to-tail connector protein phrog_3881 head-tail connector protein connector 1 7344 7697
YP_009286101.1 NC_031061_p56 hypothetical protein phrog_16141 unknown function unknown function 1 40435 40722
YP_009286055.1 NC_031061_p10 head-to-tail connector protein phrog_556 minor head protein head and packaging 1 7709 8038
YP_009286064.1 NC_031061_p19 hypothetical protein phrog_110 minor tail protein tail 1 17764 19362
YP_009286072.1 NC_031061_p27 hypothetical protein phrog_13955 unknown function unknown function 1 24428 24811
YP_009286099.1 NC_031061_p54 hypothetical protein phrog_210 unknown function unknown function 1 39300 40169
YP_009286067.1 NC_031061_p22 membrane protein phrog_565 holin lysis 1 21074 21430
YP_009286118.1 NC_031061_p73 hypothetical protein phrog_6055 unknown function unknown function 1 48782 49276
YP_009286119.1 NC_031061_p74 hypothetical protein phrog_14741 unknown function unknown function 1 49273 49527
YP_009286123.1 NC_031061_p78 hypothetical protein phrog_1467 unknown function unknown function 1 50922 51587
YP_009286129.1 NC_031061_p84 HNH endonuclease phrog_589 HNH endonuclease DNA, RNA and nucleotide metabolism 1 53045 53380
YP_009286065.1 NC_031061_p20 lysin A phrog_1512 endolysin lysis 1 19457 20161
YP_009286091.1 NC_031061_p46 hypothetical protein singleton unknown function unknown function 1 36594 36767
YP_009286116.1 NC_031061_p71 hypothetical protein phrog_25163 DNA binding protein DNA, RNA and nucleotide metabolism 1 47788 47904
YP_009286090.1 NC_031061_p45 CRO protein phrog_19814 unknown function unknown function 1 36259 36597
YP_009286120.1 NC_031061_p75 crossover junction endodeoxyribonuclease phrog_34 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 49524 49889
YP_009286083.1 NC_031061_p38 hypothetical protein phrog_12156 DNA helicase DNA, RNA and nucleotide metabolism -1 30072 31502
YP_009286071.1 NC_031061_p26 minor tail protein phrog_2689 minor tail protein tail 1 22926 24431
YP_009286124.1 NC_031061_p79 hypothetical protein phrog_2474 MerR-like transcriptional regulator transcription regulation 1 51695 51910
YP_009286108.1 NC_031061_p63 molecular chaperone DnaJ phrog_9210 unknown function unknown function 1 43838 44473
YP_009286075.1 NC_031061_p30 hypothetical protein singleton unknown function unknown function -1 27667 28536
YP_009286113.1 NC_031061_p68 hypothetical protein phrog_19263 unknown function unknown function 1 46773 47045
YP_009286084.1 NC_031061_p39 integrase phrog_1 integrase integration and excision 1 32012 33094
YP_009286105.1 NC_031061_p60 recombination protein phrog_2780 RecT-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 42216 43295
YP_009286078.1 NC_031061_p33 hypothetical protein singleton unknown function unknown function 1 29140 29259
YP_009286063.1 NC_031061_p18 minor tail protein phrog_106 minor tail protein tail 1 16940 17767
YP_009286117.1 NC_031061_p72 hypothetical protein phrog_2149 replication initiation protein DNA, RNA and nucleotide metabolism 1 47904 48785
YP_009286053.1 NC_031061_p8 head-to-tail connector protein phrog_442 head-tail adaptor connector 1 6774 7319
YP_009286049.1 NC_031061_p4 portal protein phrog_12 portal protein head and packaging 1 2377 3795
YP_009286061.1 NC_031061_p16 hypothetical protein phrog_2320 unknown function unknown function -1 10161 10466
YP_009286076.1 NC_031061_p31 hypothetical protein phrog_6153 unknown function unknown function -1 28608 28844
YP_009286127.1 NC_031061_p82 hypothetical protein phrog_15735 unknown function unknown function 1 52612 52737
YP_009286111.1 NC_031061_p66 site-specific DNA methylase phrog_116 DNA methyltransferase other 1 44723 46300
YP_009286088.1 NC_031061_p43 hypothetical protein phrog_25907 unknown function unknown function -1 34276 35130
YP_009286094.1 NC_031061_p49 hypothetical protein phrog_130 anti-repressor Ant transcription regulation 1 37586 38155
YP_009286085.1 NC_031061_p40 hypothetical protein phrog_5316 unknown function unknown function -1 33091 33303
YP_009286103.1 NC_031061_p58 exonuclease phrog_2857 tail fiber protein tail 1 40958 41293
YP_009286068.1 NC_031061_p23 membrane protein phrog_1298 minor tail protein tail 1 21427 21909
YP_009286093.1 NC_031061_p48 hypothetical protein singleton unknown function unknown function 1 37326 37592
YP_009286096.1 NC_031061_p51 hypothetical protein phrog_1840 excisionase integration and excision 1 38376 38666
YP_009286048.1 NC_031061_p3 hypothetical protein phrog_4810 unknown function unknown function 1 2219 2380
YP_009286097.1 NC_031061_p52 hypothetical protein phrog_9213 unknown function unknown function 1 38663 38869
YP_009286114.1 NC_031061_p69 hypothetical protein phrog_16050 unknown function unknown function 1 47042 47290
YP_009286073.1 NC_031061_p28 minor tail protein phrog_8780 minor tail protein tail 1 24789 27047
YP_009286081.1 NC_031061_p36 hypothetical protein singleton unknown function unknown function -1 29746 29835
YP_009286089.1 NC_031061_p44 immunity repressor phrog_20450 transcriptional repressor transcription regulation -1 35130 36080
YP_009286069.1 NC_031061_p24 membrane protein phrog_726 unknown function unknown function 1 21899 22312
YP_009286109.1 NC_031061_p64 hypothetical protein phrog_36079 unknown function unknown function 1 44470 44580
YP_009286050.1 NC_031061_p5 capsid maturation protease phrog_80 head maturation protease head and packaging 1 3776 4696
YP_009286066.1 NC_031061_p21 lysin A phrog_3084 endolysin lysis 1 20161 21072
YP_009286074.1 NC_031061_p29 hypothetical protein phrog_7114 minor tail protein tail 1 27051 27647
YP_009286087.1 NC_031061_p42 HipA toxin singleton unknown function unknown function 1 33833 34285
YP_009286098.1 NC_031061_p53 hypothetical protein phrog_204 unknown function unknown function 1 38895 39296
YP_009286126.1 NC_031061_p81 hypothetical protein phrog_17450 unknown function unknown function 1 52220 52612
YP_009286104.1 NC_031061_p59 exonuclease phrog_434 RecE-like recombination exonuclease DNA, RNA and nucleotide metabolism 1 41290 42219
YP_009286086.1 NC_031061_p41 hypothetical protein phrog_87 metallo-protease other -1 33300 33716
YP_009286080.1 NC_031061_p35 hypothetical protein phrog_34830 unknown function unknown function -1 29508 29678
YP_009286060.1 NC_031061_p15 hypothetical protein phrog_3860 tail assembly chaperone tail 1 9285 9932
YP_009286079.1 NC_031061_p34 hypothetical protein phrog_597 DNA binding protein DNA, RNA and nucleotide metabolism -1 29285 29521
YP_009286125.1 NC_031061_p80 hypothetical protein phrog_9543 unknown function unknown function 1 51907 52233
YP_009286082.1 NC_031061_p37 hypothetical protein singleton unknown function unknown function 1 29898 30080
YP_009286077.1 NC_031061_p32 hypothetical protein phrog_4347 unknown function unknown function 1 28866 29126
YP_009286107.1 NC_031061_p62 hypothetical protein phrog_10709 unknown function unknown function 1 43659 43841
YP_009286112.1 NC_031061_p67 methyltransferase phrog_954 DNA methyltransferase other 1 46297 46773