| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_031061 |
Definition |
Gordonia phage Nymphadora, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Nymbaxtervirinae; Nymphadoravirus; Gordonia virus Nymphadora. |
DB of origin |
REFSEQ |
Length |
53431 |
Host Name |
Gordonia terrae |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
84 |
%GC |
66.55 |
Number of singletons |
7 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009286058.1 | NC_031061_p13 | hypothetical protein | phrog_17334 | unknown function | unknown function | 1 | 9049 | 9222 |
| YP_009286059.1 | NC_031061_p14 | hypothetical protein | phrog_3860 | tail assembly chaperone | tail | 1 | 9285 | 10189 |
| YP_009286070.1 | NC_031061_p25 | lysin B | phrog_102 | endolysin | lysis | 1 | 22318 | 22926 |
| YP_009286110.1 | NC_031061_p65 | hypothetical protein | phrog_7793 | unknown function | unknown function | 1 | 44577 | 44726 |
| YP_009286057.1 | NC_031061_p12 | major tail subunit | phrog_3884 | major tail protein | tail | 1 | 8478 | 8990 |
| YP_009286122.1 | NC_031061_p77 | hypothetical protein | phrog_37625 | unknown function | unknown function | 1 | 50386 | 50916 |
| YP_009286047.1 | NC_031061_p2 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 498 | 2222 |
| YP_009286095.1 | NC_031061_p50 | hypothetical protein | phrog_7723 | unknown function | unknown function | 1 | 38152 | 38379 |
| YP_009286106.1 | NC_031061_p61 | hypothetical protein | phrog_19094 | unknown function | unknown function | 1 | 43288 | 43662 |
| YP_009286102.1 | NC_031061_p57 | hypothetical protein | phrog_1581 | unknown function | unknown function | 1 | 40719 | 40961 |
| YP_009286100.1 | NC_031061_p55 | hypothetical protein | phrog_16275 | unknown function | unknown function | 1 | 40166 | 40438 |
| YP_009286052.1 | NC_031061_p7 | head-to-tail connector protein | phrog_9538 | head-tail connector protein | connector | 1 | 6430 | 6777 |
| YP_009286056.1 | NC_031061_p11 | head-to-tail connector protein | phrog_2595 | head-tail connector protein | connector | 1 | 8035 | 8475 |
| YP_009286092.1 | NC_031061_p47 | hypothetical protein | phrog_17511 | unknown function | unknown function | 1 | 36764 | 37312 |
| YP_009286128.1 | NC_031061_p83 | hypothetical protein | phrog_10381 | unknown function | unknown function | 1 | 52737 | 53045 |
| YP_009286051.1 | NC_031061_p6 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 4693 | 6342 |
| YP_009286046.1 | NC_031061_p1 | terminase small subunit | phrog_83 | terminase small subunit | head and packaging | 1 | 56 | 520 |
| YP_009286121.1 | NC_031061_p76 | hypothetical protein | phrog_14446 | unknown function | unknown function | 1 | 49886 | 50389 |
| YP_009286115.1 | NC_031061_p70 | hypothetical protein | phrog_10621 | unknown function | unknown function | 1 | 47387 | 47788 |
| YP_009286062.1 | NC_031061_p17 | tape measure protein | phrog_7025 | tail length tape measure protein | tail | 1 | 10512 | 16940 |
| YP_009286054.1 | NC_031061_p9 | head-to-tail connector protein | phrog_3881 | head-tail connector protein | connector | 1 | 7344 | 7697 |
| YP_009286101.1 | NC_031061_p56 | hypothetical protein | phrog_16141 | unknown function | unknown function | 1 | 40435 | 40722 |
| YP_009286055.1 | NC_031061_p10 | head-to-tail connector protein | phrog_556 | minor head protein | head and packaging | 1 | 7709 | 8038 |
| YP_009286064.1 | NC_031061_p19 | hypothetical protein | phrog_110 | minor tail protein | tail | 1 | 17764 | 19362 |
| YP_009286072.1 | NC_031061_p27 | hypothetical protein | phrog_13955 | unknown function | unknown function | 1 | 24428 | 24811 |
| YP_009286099.1 | NC_031061_p54 | hypothetical protein | phrog_210 | unknown function | unknown function | 1 | 39300 | 40169 |
| YP_009286067.1 | NC_031061_p22 | membrane protein | phrog_565 | holin | lysis | 1 | 21074 | 21430 |
| YP_009286118.1 | NC_031061_p73 | hypothetical protein | phrog_6055 | unknown function | unknown function | 1 | 48782 | 49276 |
| YP_009286119.1 | NC_031061_p74 | hypothetical protein | phrog_14741 | unknown function | unknown function | 1 | 49273 | 49527 |
| YP_009286123.1 | NC_031061_p78 | hypothetical protein | phrog_1467 | unknown function | unknown function | 1 | 50922 | 51587 |
| YP_009286129.1 | NC_031061_p84 | HNH endonuclease | phrog_589 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 53045 | 53380 |
| YP_009286065.1 | NC_031061_p20 | lysin A | phrog_1512 | endolysin | lysis | 1 | 19457 | 20161 |
| YP_009286091.1 | NC_031061_p46 | hypothetical protein | singleton | unknown function | unknown function | 1 | 36594 | 36767 |
| YP_009286116.1 | NC_031061_p71 | hypothetical protein | phrog_25163 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 47788 | 47904 |
| YP_009286090.1 | NC_031061_p45 | CRO protein | phrog_19814 | unknown function | unknown function | 1 | 36259 | 36597 |
| YP_009286120.1 | NC_031061_p75 | crossover junction endodeoxyribonuclease | phrog_34 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 49524 | 49889 |
| YP_009286083.1 | NC_031061_p38 | hypothetical protein | phrog_12156 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 30072 | 31502 |
| YP_009286071.1 | NC_031061_p26 | minor tail protein | phrog_2689 | minor tail protein | tail | 1 | 22926 | 24431 |
| YP_009286124.1 | NC_031061_p79 | hypothetical protein | phrog_2474 | MerR-like transcriptional regulator | transcription regulation | 1 | 51695 | 51910 |
| YP_009286108.1 | NC_031061_p63 | molecular chaperone DnaJ | phrog_9210 | unknown function | unknown function | 1 | 43838 | 44473 |
| YP_009286075.1 | NC_031061_p30 | hypothetical protein | singleton | unknown function | unknown function | -1 | 27667 | 28536 |
| YP_009286113.1 | NC_031061_p68 | hypothetical protein | phrog_19263 | unknown function | unknown function | 1 | 46773 | 47045 |
| YP_009286084.1 | NC_031061_p39 | integrase | phrog_1 | integrase | integration and excision | 1 | 32012 | 33094 |
| YP_009286105.1 | NC_031061_p60 | recombination protein | phrog_2780 | RecT-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 42216 | 43295 |
| YP_009286078.1 | NC_031061_p33 | hypothetical protein | singleton | unknown function | unknown function | 1 | 29140 | 29259 |
| YP_009286063.1 | NC_031061_p18 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 16940 | 17767 |
| YP_009286117.1 | NC_031061_p72 | hypothetical protein | phrog_2149 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 47904 | 48785 |
| YP_009286053.1 | NC_031061_p8 | head-to-tail connector protein | phrog_442 | head-tail adaptor | connector | 1 | 6774 | 7319 |
| YP_009286049.1 | NC_031061_p4 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 2377 | 3795 |
| YP_009286061.1 | NC_031061_p16 | hypothetical protein | phrog_2320 | unknown function | unknown function | -1 | 10161 | 10466 |
| YP_009286076.1 | NC_031061_p31 | hypothetical protein | phrog_6153 | unknown function | unknown function | -1 | 28608 | 28844 |
| YP_009286127.1 | NC_031061_p82 | hypothetical protein | phrog_15735 | unknown function | unknown function | 1 | 52612 | 52737 |
| YP_009286111.1 | NC_031061_p66 | site-specific DNA methylase | phrog_116 | DNA methyltransferase | other | 1 | 44723 | 46300 |
| YP_009286088.1 | NC_031061_p43 | hypothetical protein | phrog_25907 | unknown function | unknown function | -1 | 34276 | 35130 |
| YP_009286094.1 | NC_031061_p49 | hypothetical protein | phrog_130 | anti-repressor Ant | transcription regulation | 1 | 37586 | 38155 |
| YP_009286085.1 | NC_031061_p40 | hypothetical protein | phrog_5316 | unknown function | unknown function | -1 | 33091 | 33303 |
| YP_009286103.1 | NC_031061_p58 | exonuclease | phrog_2857 | tail fiber protein | tail | 1 | 40958 | 41293 |
| YP_009286068.1 | NC_031061_p23 | membrane protein | phrog_1298 | minor tail protein | tail | 1 | 21427 | 21909 |
| YP_009286093.1 | NC_031061_p48 | hypothetical protein | singleton | unknown function | unknown function | 1 | 37326 | 37592 |
| YP_009286096.1 | NC_031061_p51 | hypothetical protein | phrog_1840 | excisionase | integration and excision | 1 | 38376 | 38666 |
| YP_009286048.1 | NC_031061_p3 | hypothetical protein | phrog_4810 | unknown function | unknown function | 1 | 2219 | 2380 |
| YP_009286097.1 | NC_031061_p52 | hypothetical protein | phrog_9213 | unknown function | unknown function | 1 | 38663 | 38869 |
| YP_009286114.1 | NC_031061_p69 | hypothetical protein | phrog_16050 | unknown function | unknown function | 1 | 47042 | 47290 |
| YP_009286073.1 | NC_031061_p28 | minor tail protein | phrog_8780 | minor tail protein | tail | 1 | 24789 | 27047 |
| YP_009286081.1 | NC_031061_p36 | hypothetical protein | singleton | unknown function | unknown function | -1 | 29746 | 29835 |
| YP_009286089.1 | NC_031061_p44 | immunity repressor | phrog_20450 | transcriptional repressor | transcription regulation | -1 | 35130 | 36080 |
| YP_009286069.1 | NC_031061_p24 | membrane protein | phrog_726 | unknown function | unknown function | 1 | 21899 | 22312 |
| YP_009286109.1 | NC_031061_p64 | hypothetical protein | phrog_36079 | unknown function | unknown function | 1 | 44470 | 44580 |
| YP_009286050.1 | NC_031061_p5 | capsid maturation protease | phrog_80 | head maturation protease | head and packaging | 1 | 3776 | 4696 |
| YP_009286066.1 | NC_031061_p21 | lysin A | phrog_3084 | endolysin | lysis | 1 | 20161 | 21072 |
| YP_009286074.1 | NC_031061_p29 | hypothetical protein | phrog_7114 | minor tail protein | tail | 1 | 27051 | 27647 |
| YP_009286087.1 | NC_031061_p42 | HipA toxin | singleton | unknown function | unknown function | 1 | 33833 | 34285 |
| YP_009286098.1 | NC_031061_p53 | hypothetical protein | phrog_204 | unknown function | unknown function | 1 | 38895 | 39296 |
| YP_009286126.1 | NC_031061_p81 | hypothetical protein | phrog_17450 | unknown function | unknown function | 1 | 52220 | 52612 |
| YP_009286104.1 | NC_031061_p59 | exonuclease | phrog_434 | RecE-like recombination exonuclease | DNA, RNA and nucleotide metabolism | 1 | 41290 | 42219 |
| YP_009286086.1 | NC_031061_p41 | hypothetical protein | phrog_87 | metallo-protease | other | -1 | 33300 | 33716 |
| YP_009286080.1 | NC_031061_p35 | hypothetical protein | phrog_34830 | unknown function | unknown function | -1 | 29508 | 29678 |
| YP_009286060.1 | NC_031061_p15 | hypothetical protein | phrog_3860 | tail assembly chaperone | tail | 1 | 9285 | 9932 |
| YP_009286079.1 | NC_031061_p34 | hypothetical protein | phrog_597 | DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 29285 | 29521 |
| YP_009286125.1 | NC_031061_p80 | hypothetical protein | phrog_9543 | unknown function | unknown function | 1 | 51907 | 52233 |
| YP_009286082.1 | NC_031061_p37 | hypothetical protein | singleton | unknown function | unknown function | 1 | 29898 | 30080 |
| YP_009286077.1 | NC_031061_p32 | hypothetical protein | phrog_4347 | unknown function | unknown function | 1 | 28866 | 29126 |
| YP_009286107.1 | NC_031061_p62 | hypothetical protein | phrog_10709 | unknown function | unknown function | 1 | 43659 | 43841 |
| YP_009286112.1 | NC_031061_p67 | methyltransferase | phrog_954 | DNA methyltransferase | other | 1 | 46297 | 46773 |