| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_031066 |
Definition |
Citrobacter phage SH1, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Studiervirinae; Teetrevirus; Citrobacter virus SH1. |
DB of origin |
REFSEQ |
Length |
39434 |
Host Name |
Citrobacter freundii |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
53 |
%GC |
50.95 |
Number of singletons |
1 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009286630.1 | NC_031066_p5 | protein kinase | phrog_2828 | serine-threonine kinase | other | 1 | 2345 | 3454 |
| YP_009286632.1 | NC_031066_p7 | fusion protein | phrog_6440 | unknown function | unknown function | 1 | 6280 | 6774 |
| YP_009286674.1 | NC_031066_p49 | hypothetical protein | phrog_4306 | Rz-like spanin | lysis | 1 | 36479 | 36733 |
| YP_009286655.1 | NC_031066_p30 | hypothetical protein | phrog_4790 | host RecBCD nuclease inhibitor | moron, auxiliary metabolic gene and host takeover | 1 | 17206 | 17442 |
| YP_009286662.1 | NC_031066_p37 | capsid assembly protein | phrog_1052 | head assembly | head and packaging | 1 | 21107 | 22039 |
| YP_009286669.1 | NC_031066_p44 | internal virion protein D | phrog_342 | internal virion protein with endolysin domain | head and packaging | 1 | 29781 | 33743 |
| YP_009286645.1 | NC_031066_p20 | hypothetical protein | phrog_17413 | unknown function | unknown function | 1 | 12074 | 12181 |
| YP_009286653.1 | NC_031066_p28 | fusion protein | phrog_1452 | Gp5.5-like host HNS inhibition | moron, auxiliary metabolic gene and host takeover | 1 | 16752 | 17057 |
| YP_009286671.1 | NC_031066_p46 | lysis protein | phrog_920 | holin | lysis | 1 | 35802 | 36005 |
| YP_009286667.1 | NC_031066_p42 | internal virion protein B | phrog_805 | internal virion protein | head and packaging | 1 | 26923 | 27516 |
| YP_009286670.1 | NC_031066_p45 | hypothetical protein | phrog_6256 | tail fiber protein | tail | 1 | 33815 | 35791 |
| YP_009286640.1 | NC_031066_p15 | bacterial RNA polymerase inhibitor | phrog_1307 | RNA polymerase inhibitor | DNA, RNA and nucleotide metabolism | 1 | 9736 | 9975 |
| YP_009286633.1 | NC_031066_p8 | hypothetical protein | phrog_2490 | unknown function | unknown function | 1 | 6865 | 7005 |
| YP_009286661.1 | NC_031066_p36 | head-to-tail joining protein | phrog_449 | head-tail adaptor | connector | 1 | 19398 | 21005 |
| YP_009286638.1 | NC_031066_p13 | hypothetical protein | singleton | unknown function | unknown function | 1 | 9500 | 9649 |
| YP_009286666.1 | NC_031066_p41 | internal virion protein A | phrog_308 | internal virion protein | head and packaging | 1 | 26510 | 26920 |
| YP_009286651.1 | NC_031066_p26 | hypothetical protein | phrog_2254 | unknown function | unknown function | 1 | 14269 | 14553 |
| YP_009286664.1 | NC_031066_p39 | tail tubular protein A | phrog_446 | tail protein | tail | 1 | 23426 | 24016 |
| YP_009286642.1 | NC_031066_p17 | homing endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 10730 | 11200 |
| YP_009286657.1 | NC_031066_p32 | hypothetical protein | phrog_5008 | unknown function | unknown function | 1 | 18332 | 18445 |
| YP_009286648.1 | NC_031066_p23 | primase/helicase | phrog_239 | DNA primase/helicase | DNA, RNA and nucleotide metabolism | 1 | 12434 | 13948 |
| YP_009286665.1 | NC_031066_p40 | tail tubular protein B | phrog_457 | tail protein | tail | 1 | 24032 | 26437 |
| YP_009286660.1 | NC_031066_p35 | host specificity protein B | phrog_1320 | host range and adsorption protein | moron, auxiliary metabolic gene and host takeover | 1 | 19067 | 19387 |
| YP_009286663.1 | NC_031066_p38 | minor capsid protein | phrog_267 | major head protein | head and packaging | 1 | 22196 | 23236 |
| YP_009286678.1 | NC_031066_p53 | hypothetical protein | phrog_2193 | unknown function | unknown function | 1 | 38798 | 38947 |
| YP_009286634.1 | NC_031066_p9 | deoxyguanosine triphospho-hydrolase inhibitor | phrog_2949 | dGTPase inhibitor; target for F exclusion | other | 1 | 7008 | 7223 |
| YP_009286641.1 | NC_031066_p16 | single stranded dna-binding protein | phrog_112 | Gp2.5-like ssDNA binding protein and ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 10028 | 10726 |
| YP_009286676.1 | NC_031066_p51 | hypothetical protein | phrog_8982 | unknown function | unknown function | 1 | 37503 | 37673 |
| YP_009286675.1 | NC_031066_p50 | DNA packaging protein B | phrog_38 | terminase large subunit | head and packaging | 1 | 36791 | 38554 |
| YP_009286650.1 | NC_031066_p25 | hypothetical protein | phrog_1950 | unknown function | unknown function | 1 | 14044 | 14256 |
| YP_009286652.1 | NC_031066_p27 | DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 14621 | 16735 |
| YP_009286647.1 | NC_031066_p22 | hypothetical protein | phrog_23725 | unknown function | unknown function | 1 | 12282 | 12437 |
| YP_009286677.1 | NC_031066_p52 | hypothetical protein | phrog_8173 | unknown function | unknown function | 1 | 37977 | 38105 |
| YP_009286637.1 | NC_031066_p12 | hypothetical protein | phrog_4943 | unknown function | unknown function | 1 | 8822 | 9295 |
| YP_009286646.1 | NC_031066_p21 | DNA primase/helicase | phrog_239 | DNA primase/helicase | DNA, RNA and nucleotide metabolism | 1 | 12248 | 13948 |
| YP_009286629.1 | NC_031066_p4 | hypothetical protein | phrog_2385 | unknown function | unknown function | 1 | 1976 | 2173 |
| YP_009286672.1 | NC_031066_p47 | DNA packaging protein A | phrog_1351 | terminase small subunit | head and packaging | 1 | 36009 | 36275 |
| YP_009286626.1 | NC_031066_p1 | s-adenosyl-l-methionine hydrolase | phrog_2226 | SAM-dependent methyltransferase | other | 1 | 921 | 1379 |
| YP_009286649.1 | NC_031066_p24 | hypothetical protein | phrog_5140 | unknown function | unknown function | 1 | 13668 | 13997 |
| YP_009286631.1 | NC_031066_p6 | RNA polymerase | phrog_414 | RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 3525 | 6179 |
| YP_009286639.1 | NC_031066_p14 | hypothetical protein | phrog_1312 | unknown function | unknown function | 1 | 9678 | 9824 |
| YP_009286654.1 | NC_031066_p29 | fusion protein | phrog_1334 | unknown function | unknown function | 1 | 17054 | 17263 |
| YP_009286643.1 | NC_031066_p18 | hypothetical protein | phrog_945 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 11164 | 11613 |
| YP_009286659.1 | NC_031066_p34 | hypothetical protein | phrog_1391 | unknown function | unknown function | 1 | 18713 | 19039 |
| YP_009286668.1 | NC_031066_p43 | internal virion protein C | phrog_1339 | internal virion protein | head and packaging | 1 | 27519 | 29762 |
| YP_009286628.1 | NC_031066_p3 | hypothetical protein | phrog_25811 | unknown function | unknown function | 1 | 1794 | 1979 |
| YP_009286656.1 | NC_031066_p31 | exonuclease | phrog_107 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 17439 | 18350 |
| YP_009286644.1 | NC_031066_p19 | N-acetylmuramoyl-l-alanine amidase | phrog_822 | amidase | lysis | 1 | 11614 | 12069 |
| YP_009286627.1 | NC_031066_p2 | hypothetical protein | phrog_6500 | unknown function | unknown function | 1 | 1574 | 1801 |
| YP_009286635.1 | NC_031066_p10 | DNA ligase | phrog_114 | ATP-dependent DNA ligase | DNA, RNA and nucleotide metabolism | 1 | 7364 | 8395 |
| YP_009286658.1 | NC_031066_p33 | hypothetical protein | phrog_1447 | unknown function | unknown function | 1 | 18538 | 18783 |
| YP_009286636.1 | NC_031066_p11 | hypothetical protein | phrog_1777 | unknown function | unknown function | 1 | 8565 | 8822 |
| YP_009286673.1 | NC_031066_p48 | endopeptidase | phrog_1327 | Rz-like spanin | lysis | 1 | 36352 | 36816 |