Genomic map of Citrobacter phage SH1 (NC_031066)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_031066
Definition
Citrobacter phage SH1, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Studiervirinae; Teetrevirus; Citrobacter virus SH1.
DB of origin
REFSEQ
Length
39434
Host Name
Citrobacter freundii
Host domain
Bacteria
Is prophage?
undef
Number of proteins
53
%GC
50.95
Number of singletons
1
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009286630.1 NC_031066_p5 protein kinase phrog_2828 serine-threonine kinase other 1 2345 3454
YP_009286632.1 NC_031066_p7 fusion protein phrog_6440 unknown function unknown function 1 6280 6774
YP_009286674.1 NC_031066_p49 hypothetical protein phrog_4306 Rz-like spanin lysis 1 36479 36733
YP_009286655.1 NC_031066_p30 hypothetical protein phrog_4790 host RecBCD nuclease inhibitor moron, auxiliary metabolic gene and host takeover 1 17206 17442
YP_009286662.1 NC_031066_p37 capsid assembly protein phrog_1052 head assembly head and packaging 1 21107 22039
YP_009286669.1 NC_031066_p44 internal virion protein D phrog_342 internal virion protein with endolysin domain head and packaging 1 29781 33743
YP_009286645.1 NC_031066_p20 hypothetical protein phrog_17413 unknown function unknown function 1 12074 12181
YP_009286653.1 NC_031066_p28 fusion protein phrog_1452 Gp5.5-like host HNS inhibition moron, auxiliary metabolic gene and host takeover 1 16752 17057
YP_009286671.1 NC_031066_p46 lysis protein phrog_920 holin lysis 1 35802 36005
YP_009286667.1 NC_031066_p42 internal virion protein B phrog_805 internal virion protein head and packaging 1 26923 27516
YP_009286670.1 NC_031066_p45 hypothetical protein phrog_6256 tail fiber protein tail 1 33815 35791
YP_009286640.1 NC_031066_p15 bacterial RNA polymerase inhibitor phrog_1307 RNA polymerase inhibitor DNA, RNA and nucleotide metabolism 1 9736 9975
YP_009286633.1 NC_031066_p8 hypothetical protein phrog_2490 unknown function unknown function 1 6865 7005
YP_009286661.1 NC_031066_p36 head-to-tail joining protein phrog_449 head-tail adaptor connector 1 19398 21005
YP_009286638.1 NC_031066_p13 hypothetical protein singleton unknown function unknown function 1 9500 9649
YP_009286666.1 NC_031066_p41 internal virion protein A phrog_308 internal virion protein head and packaging 1 26510 26920
YP_009286651.1 NC_031066_p26 hypothetical protein phrog_2254 unknown function unknown function 1 14269 14553
YP_009286664.1 NC_031066_p39 tail tubular protein A phrog_446 tail protein tail 1 23426 24016
YP_009286642.1 NC_031066_p17 homing endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism 1 10730 11200
YP_009286657.1 NC_031066_p32 hypothetical protein phrog_5008 unknown function unknown function 1 18332 18445
YP_009286648.1 NC_031066_p23 primase/helicase phrog_239 DNA primase/helicase DNA, RNA and nucleotide metabolism 1 12434 13948
YP_009286665.1 NC_031066_p40 tail tubular protein B phrog_457 tail protein tail 1 24032 26437
YP_009286660.1 NC_031066_p35 host specificity protein B phrog_1320 host range and adsorption protein moron, auxiliary metabolic gene and host takeover 1 19067 19387
YP_009286663.1 NC_031066_p38 minor capsid protein phrog_267 major head protein head and packaging 1 22196 23236
YP_009286678.1 NC_031066_p53 hypothetical protein phrog_2193 unknown function unknown function 1 38798 38947
YP_009286634.1 NC_031066_p9 deoxyguanosine triphospho-hydrolase inhibitor phrog_2949 dGTPase inhibitor; target for F exclusion other 1 7008 7223
YP_009286641.1 NC_031066_p16 single stranded dna-binding protein phrog_112 Gp2.5-like ssDNA binding protein and ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 10028 10726
YP_009286676.1 NC_031066_p51 hypothetical protein phrog_8982 unknown function unknown function 1 37503 37673
YP_009286675.1 NC_031066_p50 DNA packaging protein B phrog_38 terminase large subunit head and packaging 1 36791 38554
YP_009286650.1 NC_031066_p25 hypothetical protein phrog_1950 unknown function unknown function 1 14044 14256
YP_009286652.1 NC_031066_p27 DNA polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 14621 16735
YP_009286647.1 NC_031066_p22 hypothetical protein phrog_23725 unknown function unknown function 1 12282 12437
YP_009286677.1 NC_031066_p52 hypothetical protein phrog_8173 unknown function unknown function 1 37977 38105
YP_009286637.1 NC_031066_p12 hypothetical protein phrog_4943 unknown function unknown function 1 8822 9295
YP_009286646.1 NC_031066_p21 DNA primase/helicase phrog_239 DNA primase/helicase DNA, RNA and nucleotide metabolism 1 12248 13948
YP_009286629.1 NC_031066_p4 hypothetical protein phrog_2385 unknown function unknown function 1 1976 2173
YP_009286672.1 NC_031066_p47 DNA packaging protein A phrog_1351 terminase small subunit head and packaging 1 36009 36275
YP_009286626.1 NC_031066_p1 s-adenosyl-l-methionine hydrolase phrog_2226 SAM-dependent methyltransferase other 1 921 1379
YP_009286649.1 NC_031066_p24 hypothetical protein phrog_5140 unknown function unknown function 1 13668 13997
YP_009286631.1 NC_031066_p6 RNA polymerase phrog_414 RNA polymerase DNA, RNA and nucleotide metabolism 1 3525 6179
YP_009286639.1 NC_031066_p14 hypothetical protein phrog_1312 unknown function unknown function 1 9678 9824
YP_009286654.1 NC_031066_p29 fusion protein phrog_1334 unknown function unknown function 1 17054 17263
YP_009286643.1 NC_031066_p18 hypothetical protein phrog_945 endonuclease DNA, RNA and nucleotide metabolism 1 11164 11613
YP_009286659.1 NC_031066_p34 hypothetical protein phrog_1391 unknown function unknown function 1 18713 19039
YP_009286668.1 NC_031066_p43 internal virion protein C phrog_1339 internal virion protein head and packaging 1 27519 29762
YP_009286628.1 NC_031066_p3 hypothetical protein phrog_25811 unknown function unknown function 1 1794 1979
YP_009286656.1 NC_031066_p31 exonuclease phrog_107 exonuclease DNA, RNA and nucleotide metabolism 1 17439 18350
YP_009286644.1 NC_031066_p19 N-acetylmuramoyl-l-alanine amidase phrog_822 amidase lysis 1 11614 12069
YP_009286627.1 NC_031066_p2 hypothetical protein phrog_6500 unknown function unknown function 1 1574 1801
YP_009286635.1 NC_031066_p10 DNA ligase phrog_114 ATP-dependent DNA ligase DNA, RNA and nucleotide metabolism 1 7364 8395
YP_009286658.1 NC_031066_p33 hypothetical protein phrog_1447 unknown function unknown function 1 18538 18783
YP_009286636.1 NC_031066_p11 hypothetical protein phrog_1777 unknown function unknown function 1 8565 8822
YP_009286673.1 NC_031066_p48 endopeptidase phrog_1327 Rz-like spanin lysis 1 36352 36816