| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_031068 |
Definition |
Pectobacterium phage PP16, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Corkvirinae; Kotilavirus; Pectobacterium virus PP16. |
DB of origin |
REFSEQ |
Length |
43902 |
Host Name |
Pectobacterium carotovorum |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
56 |
%GC |
51.83 |
Number of singletons |
10 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009286778.1 | NC_031068_p7 | hypothetical protein | singleton | unknown function | unknown function | 1 | 2691 | 2945 |
| YP_009286809.1 | NC_031068_p38 | N-acetyltransferase | phrog_5167 | unknown function | unknown function | 1 | 22498 | 22917 |
| YP_009286791.1 | NC_031068_p20 | hypothetical protein | phrog_34077 | unknown function | unknown function | 1 | 11011 | 11340 |
| YP_009286811.1 | NC_031068_p40 | scaffold protein | phrog_1018 | head scaffolding protein | head and packaging | 1 | 24755 | 25627 |
| YP_009286785.1 | NC_031068_p14 | hypothetical protein | phrog_20064 | unknown function | unknown function | 1 | 8031 | 8174 |
| YP_009286793.1 | NC_031068_p22 | hypothetical protein | phrog_15093 | unknown function | unknown function | 1 | 11725 | 11949 |
| YP_009286822.1 | NC_031068_p51 | hypothetical protein | phrog_17528 | unknown function | unknown function | 1 | 39809 | 39997 |
| YP_009286803.1 | NC_031068_p32 | polynucleotide 5' kinase/3' phosphatase | phrog_415 | polynucleotide kinase | other | 1 | 18420 | 18902 |
| YP_009286825.1 | NC_031068_p54 | holin | phrog_20 | holin | lysis | 1 | 40808 | 41074 |
| YP_009286782.1 | NC_031068_p11 | hypothetical protein | phrog_4317 | unknown function | unknown function | 1 | 6364 | 6831 |
| YP_009286792.1 | NC_031068_p21 | hypothetical protein | phrog_22253 | unknown function | unknown function | 1 | 11321 | 11728 |
| YP_009286796.1 | NC_031068_p25 | 5'-3' exonuclease | phrog_107 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 15191 | 16249 |
| YP_009286773.1 | NC_031068_p2 | hypothetical protein | singleton | unknown function | unknown function | 1 | 1155 | 1343 |
| YP_009286780.1 | NC_031068_p9 | hypothetical protein | phrog_13313 | unknown function | unknown function | 1 | 3677 | 5419 |
| YP_009286777.1 | NC_031068_p6 | hypothetical protein | singleton | unknown function | unknown function | 1 | 2435 | 2680 |
| YP_009286813.1 | NC_031068_p42 | tubular protein A | phrog_446 | tail protein | tail | 1 | 26698 | 27255 |
| YP_009286786.1 | NC_031068_p15 | hypothetical protein | singleton | unknown function | unknown function | 1 | 8174 | 8413 |
| YP_009286826.1 | NC_031068_p55 | hypothetical protein | phrog_7 | endolysin | lysis | 1 | 41058 | 41663 |
| YP_009286814.1 | NC_031068_p43 | hypothetical protein | phrog_457 | tail protein | tail | 1 | 27267 | 29597 |
| YP_009286821.1 | NC_031068_p50 | DNA maturase B | phrog_38 | terminase large subunit | head and packaging | 1 | 37985 | 39799 |
| YP_009286802.1 | NC_031068_p31 | phosphodiestherase | phrog_221 | metallo-phosphoesterase | other | 1 | 17446 | 18420 |
| YP_009286807.1 | NC_031068_p36 | DNA-directed RNA-polymerase | phrog_414 | RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 19787 | 22228 |
| YP_009286790.1 | NC_031068_p19 | nucleotidyl transferase | phrog_1614 | nucleotidyltransferase | DNA, RNA and nucleotide metabolism | 1 | 10343 | 10966 |
| YP_009286799.1 | NC_031068_p28 | DNA endonuclease VII | phrog_423 | endonuclease VII | DNA, RNA and nucleotide metabolism | 1 | 16542 | 16967 |
| YP_009286784.1 | NC_031068_p13 | DNA primase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 7258 | 8061 |
| YP_009286774.1 | NC_031068_p3 | hypothetical protein | phrog_5277 | unknown function | unknown function | 1 | 1396 | 1959 |
| YP_009286805.1 | NC_031068_p34 | hypothetical protein | singleton | unknown function | unknown function | 1 | 19416 | 19616 |
| YP_009286783.1 | NC_031068_p12 | NHN family homing nuclease | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 6824 | 7261 |
| YP_009286798.1 | NC_031068_p27 | hypothetical protein | singleton | unknown function | unknown function | 1 | 16370 | 16561 |
| YP_009286781.1 | NC_031068_p10 | aminopeptidase | phrog_4191 | peptidase | other | 1 | 5403 | 6377 |
| YP_009286772.1 | NC_031068_p1 | hypothetical protein | phrog_6352 | unknown function | unknown function | 1 | 967 | 1161 |
| YP_009286824.1 | NC_031068_p53 | Rz1A protein | phrog_1804 | Rz-like spanin | lysis | 1 | 40429 | 40815 |
| YP_009286823.1 | NC_031068_p52 | hypothetical protein | phrog_9732 | unknown function | unknown function | 1 | 40156 | 40419 |
| YP_009286816.1 | NC_031068_p45 | internal virion protein B | phrog_2083 | internal virion lysozyme motif | head and packaging | 1 | 30216 | 32915 |
| YP_009286800.1 | NC_031068_p29 | hypothetical protein | singleton | unknown function | unknown function | 1 | 16867 | 17160 |
| YP_009286812.1 | NC_031068_p41 | capsid protein | phrog_267 | major head protein | head and packaging | 1 | 25641 | 26627 |
| YP_009286808.1 | NC_031068_p37 | hypothetical protein | phrog_5394 | unknown function | unknown function | 1 | 22323 | 22523 |
| YP_009286795.1 | NC_031068_p24 | hypothetical protein | phrog_862 | unknown function | unknown function | 1 | 14363 | 15178 |
| YP_009286819.1 | NC_031068_p48 | tail spike attachment protein | phrog_2710 | tail fiber protein | tail | 1 | 36915 | 37682 |
| YP_009286818.1 | NC_031068_p47 | internal virion protein C | phrog_342 | internal virion protein with endolysin domain | head and packaging | 1 | 33213 | 36905 |
| YP_009286801.1 | NC_031068_p30 | hypothetical protein | phrog_1452 | Gp5.5-like host HNS inhibition | moron, auxiliary metabolic gene and host takeover | 1 | 17138 | 17446 |
| YP_009286820.1 | NC_031068_p49 | DNA maturase A | phrog_891 | terminase small subunit | head and packaging | 1 | 37692 | 37976 |
| YP_009286817.1 | NC_031068_p46 | hypothetical protein | phrog_322 | unknown function | unknown function | 1 | 32924 | 33202 |
| YP_009286810.1 | NC_031068_p39 | head-tail connector protein | phrog_449 | head-tail adaptor | connector | 1 | 23245 | 24753 |
| YP_009286779.1 | NC_031068_p8 | hypothetical protein | singleton | unknown function | unknown function | 1 | 2964 | 3278 |
| YP_009286775.1 | NC_031068_p4 | hypothetical protein | singleton | unknown function | unknown function | 1 | 1956 | 2177 |
| YP_009286794.1 | NC_031068_p23 | DNA-directed DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 12005 | 14347 |
| YP_009286797.1 | NC_031068_p26 | hypothetical protein | phrog_36979 | unknown function | unknown function | 1 | 16110 | 16373 |
| YP_009286789.1 | NC_031068_p18 | hypothetical protein | singleton | unknown function | unknown function | 1 | 10114 | 10413 |
| YP_009286776.1 | NC_031068_p5 | hypothetical protein | phrog_27236 | unknown function | unknown function | 1 | 2218 | 2421 |
| YP_009286815.1 | NC_031068_p44 | internal virion protein A | phrog_4295 | internal virion protein | head and packaging | 1 | 29594 | 30205 |
| YP_009286787.1 | NC_031068_p16 | DNA helicase | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 8413 | 9675 |
| YP_009286804.1 | NC_031068_p33 | hypothetical protein | phrog_19680 | unknown function | unknown function | 1 | 18902 | 19459 |
| YP_009286788.1 | NC_031068_p17 | HNH family homing endonuclease | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 9662 | 10117 |
| YP_009286827.1 | NC_031068_p56 | tail spike protein | phrog_8460 | tail fiber protein | tail | 1 | 41676 | 43676 |
| YP_009286806.1 | NC_031068_p35 | hypothetical protein | phrog_16324 | unknown function | unknown function | 1 | 19600 | 19779 |