Genomic map of Pectobacterium phage PP16 (NC_031068)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_031068
Definition
Pectobacterium phage PP16, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Corkvirinae; Kotilavirus; Pectobacterium virus PP16.
DB of origin
REFSEQ
Length
43902
Host Name
Pectobacterium carotovorum
Host domain
Bacteria
Is prophage?
undef
Number of proteins
56
%GC
51.83
Number of singletons
10
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009286778.1 NC_031068_p7 hypothetical protein singleton unknown function unknown function 1 2691 2945
YP_009286809.1 NC_031068_p38 N-acetyltransferase phrog_5167 unknown function unknown function 1 22498 22917
YP_009286791.1 NC_031068_p20 hypothetical protein phrog_34077 unknown function unknown function 1 11011 11340
YP_009286811.1 NC_031068_p40 scaffold protein phrog_1018 head scaffolding protein head and packaging 1 24755 25627
YP_009286785.1 NC_031068_p14 hypothetical protein phrog_20064 unknown function unknown function 1 8031 8174
YP_009286793.1 NC_031068_p22 hypothetical protein phrog_15093 unknown function unknown function 1 11725 11949
YP_009286822.1 NC_031068_p51 hypothetical protein phrog_17528 unknown function unknown function 1 39809 39997
YP_009286803.1 NC_031068_p32 polynucleotide 5' kinase/3' phosphatase phrog_415 polynucleotide kinase other 1 18420 18902
YP_009286825.1 NC_031068_p54 holin phrog_20 holin lysis 1 40808 41074
YP_009286782.1 NC_031068_p11 hypothetical protein phrog_4317 unknown function unknown function 1 6364 6831
YP_009286792.1 NC_031068_p21 hypothetical protein phrog_22253 unknown function unknown function 1 11321 11728
YP_009286796.1 NC_031068_p25 5'-3' exonuclease phrog_107 exonuclease DNA, RNA and nucleotide metabolism 1 15191 16249
YP_009286773.1 NC_031068_p2 hypothetical protein singleton unknown function unknown function 1 1155 1343
YP_009286780.1 NC_031068_p9 hypothetical protein phrog_13313 unknown function unknown function 1 3677 5419
YP_009286777.1 NC_031068_p6 hypothetical protein singleton unknown function unknown function 1 2435 2680
YP_009286813.1 NC_031068_p42 tubular protein A phrog_446 tail protein tail 1 26698 27255
YP_009286786.1 NC_031068_p15 hypothetical protein singleton unknown function unknown function 1 8174 8413
YP_009286826.1 NC_031068_p55 hypothetical protein phrog_7 endolysin lysis 1 41058 41663
YP_009286814.1 NC_031068_p43 hypothetical protein phrog_457 tail protein tail 1 27267 29597
YP_009286821.1 NC_031068_p50 DNA maturase B phrog_38 terminase large subunit head and packaging 1 37985 39799
YP_009286802.1 NC_031068_p31 phosphodiestherase phrog_221 metallo-phosphoesterase other 1 17446 18420
YP_009286807.1 NC_031068_p36 DNA-directed RNA-polymerase phrog_414 RNA polymerase DNA, RNA and nucleotide metabolism 1 19787 22228
YP_009286790.1 NC_031068_p19 nucleotidyl transferase phrog_1614 nucleotidyltransferase DNA, RNA and nucleotide metabolism 1 10343 10966
YP_009286799.1 NC_031068_p28 DNA endonuclease VII phrog_423 endonuclease VII DNA, RNA and nucleotide metabolism 1 16542 16967
YP_009286784.1 NC_031068_p13 DNA primase phrog_47 DNA primase DNA, RNA and nucleotide metabolism 1 7258 8061
YP_009286774.1 NC_031068_p3 hypothetical protein phrog_5277 unknown function unknown function 1 1396 1959
YP_009286805.1 NC_031068_p34 hypothetical protein singleton unknown function unknown function 1 19416 19616
YP_009286783.1 NC_031068_p12 NHN family homing nuclease phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism 1 6824 7261
YP_009286798.1 NC_031068_p27 hypothetical protein singleton unknown function unknown function 1 16370 16561
YP_009286781.1 NC_031068_p10 aminopeptidase phrog_4191 peptidase other 1 5403 6377
YP_009286772.1 NC_031068_p1 hypothetical protein phrog_6352 unknown function unknown function 1 967 1161
YP_009286824.1 NC_031068_p53 Rz1A protein phrog_1804 Rz-like spanin lysis 1 40429 40815
YP_009286823.1 NC_031068_p52 hypothetical protein phrog_9732 unknown function unknown function 1 40156 40419
YP_009286816.1 NC_031068_p45 internal virion protein B phrog_2083 internal virion lysozyme motif head and packaging 1 30216 32915
YP_009286800.1 NC_031068_p29 hypothetical protein singleton unknown function unknown function 1 16867 17160
YP_009286812.1 NC_031068_p41 capsid protein phrog_267 major head protein head and packaging 1 25641 26627
YP_009286808.1 NC_031068_p37 hypothetical protein phrog_5394 unknown function unknown function 1 22323 22523
YP_009286795.1 NC_031068_p24 hypothetical protein phrog_862 unknown function unknown function 1 14363 15178
YP_009286819.1 NC_031068_p48 tail spike attachment protein phrog_2710 tail fiber protein tail 1 36915 37682
YP_009286818.1 NC_031068_p47 internal virion protein C phrog_342 internal virion protein with endolysin domain head and packaging 1 33213 36905
YP_009286801.1 NC_031068_p30 hypothetical protein phrog_1452 Gp5.5-like host HNS inhibition moron, auxiliary metabolic gene and host takeover 1 17138 17446
YP_009286820.1 NC_031068_p49 DNA maturase A phrog_891 terminase small subunit head and packaging 1 37692 37976
YP_009286817.1 NC_031068_p46 hypothetical protein phrog_322 unknown function unknown function 1 32924 33202
YP_009286810.1 NC_031068_p39 head-tail connector protein phrog_449 head-tail adaptor connector 1 23245 24753
YP_009286779.1 NC_031068_p8 hypothetical protein singleton unknown function unknown function 1 2964 3278
YP_009286775.1 NC_031068_p4 hypothetical protein singleton unknown function unknown function 1 1956 2177
YP_009286794.1 NC_031068_p23 DNA-directed DNA polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 12005 14347
YP_009286797.1 NC_031068_p26 hypothetical protein phrog_36979 unknown function unknown function 1 16110 16373
YP_009286789.1 NC_031068_p18 hypothetical protein singleton unknown function unknown function 1 10114 10413
YP_009286776.1 NC_031068_p5 hypothetical protein phrog_27236 unknown function unknown function 1 2218 2421
YP_009286815.1 NC_031068_p44 internal virion protein A phrog_4295 internal virion protein head and packaging 1 29594 30205
YP_009286787.1 NC_031068_p16 DNA helicase phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism 1 8413 9675
YP_009286804.1 NC_031068_p33 hypothetical protein phrog_19680 unknown function unknown function 1 18902 19459
YP_009286788.1 NC_031068_p17 HNH family homing endonuclease phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism 1 9662 10117
YP_009286827.1 NC_031068_p56 tail spike protein phrog_8460 tail fiber protein tail 1 41676 43676
YP_009286806.1 NC_031068_p35 hypothetical protein phrog_16324 unknown function unknown function 1 19600 19779