Genomic map of Lactococcus phage D4410 (NC_031071)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_031071
Definition
Lactococcus phage D4410, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Ceduovirus.
DB of origin
REFSEQ
Length
22825
Host Name
Lactococcus lactis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
40
%GC
35.7
Number of singletons
0
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009287188.1 NC_031071_p11 hypothetical protein phrog_1632 unknown function unknown function -1 3771 4016
YP_009287179.1 NC_031071_p2 hypothetical protein phrog_10769 unknown function unknown function -1 655 1029
YP_009287204.1 NC_031071_p27 capsid and scaffold protein phrog_3270 head maturation protease head and packaging 1 10550 11992
YP_009287209.1 NC_031071_p32 hypothetical protein phrog_10523 unknown function unknown function 1 13866 14270
YP_009287197.1 NC_031071_p20 hypothetical protein phrog_1284 unknown function unknown function -1 6345 7244
YP_009287187.1 NC_031071_p10 hypothetical protein phrog_11155 unknown function unknown function -1 3553 3771
YP_009287215.1 NC_031071_p38 capsid and scaffold protein phrog_10067 virion structural protein head and packaging 1 20156 21160
YP_009287178.1 NC_031071_p1 hypothetical protein phrog_21914 unknown function unknown function -1 454 651
YP_009287207.1 NC_031071_p30 hypothetical protein phrog_10561 unknown function unknown function 1 13424 13678
YP_009287181.1 NC_031071_p4 hypothetical protein phrog_10525 unknown function unknown function -1 1398 1721
YP_009287183.1 NC_031071_p6 hypothetical protein phrog_1295 unknown function unknown function -1 2221 2385
YP_009287208.1 NC_031071_p31 hypothetical protein phrog_12461 unknown function unknown function 1 13720 13890
YP_009287211.1 NC_031071_p34 hypothetical protein phrog_119 HNH endonuclease DNA, RNA and nucleotide metabolism 1 16122 16409
YP_009287202.1 NC_031071_p25 N-acetylmuramoyl-L-alanine amidase phrog_7 endolysin lysis 1 9096 9749
YP_009287182.1 NC_031071_p5 hypothetical protein phrog_1317 unknown function unknown function -1 1724 2224
YP_009287185.1 NC_031071_p8 essential recombination function protein phrog_155 Erf-like ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 2808 3347
YP_009287212.1 NC_031071_p35 terminase large subunit phrog_9 terminase large subunit head and packaging 1 16421 17977
YP_009287214.1 NC_031071_p37 hypothetical protein phrog_10648 unknown function unknown function 1 18269 20155
YP_009287200.1 NC_031071_p23 hypothetical protein phrog_10074 unknown function unknown function 1 8377 8526
YP_009287198.1 NC_031071_p21 hypothetical protein phrog_10138 unknown function unknown function -1 7246 7446
YP_009287217.1 NC_031071_p40 holin phrog_9407 holin lysis 1 22368 22658
YP_009287206.1 NC_031071_p29 tail fibers protein phrog_2634 major tail protein tail 1 12734 13351
YP_009287190.1 NC_031071_p13 hypothetical protein phrog_3530 unknown function unknown function -1 4187 4627
YP_009287194.1 NC_031071_p17 hypothetical protein phrog_10596 unknown function unknown function -1 5321 5710
YP_009287180.1 NC_031071_p3 hypothetical protein phrog_10148 unknown function unknown function -1 1103 1405
YP_009287216.1 NC_031071_p39 capsid and scaffold protein phrog_10326 virion structural protein head and packaging 1 21153 22346
YP_009287195.1 NC_031071_p18 DNA polymerase phrog_10577 DNA polymerase DNA, RNA and nucleotide metabolism -1 5710 6090
YP_009287192.1 NC_031071_p15 hypothetical protein phrog_33239 unknown function unknown function -1 4974 5096
YP_009287203.1 NC_031071_p26 capsid and scaffold protein phrog_10159 virion structural protein head and packaging 1 9760 10599
YP_009287210.1 NC_031071_p33 tail length tape-measure protein phrog_9145 tail length tape measure protein tail 1 14263 16125
YP_009287186.1 NC_031071_p9 hypothetical protein phrog_10559 unknown function unknown function -1 3347 3499
YP_009287191.1 NC_031071_p14 hypothetical protein phrog_1225 unknown function unknown function -1 4662 4973
YP_009287201.1 NC_031071_p24 hypothetical protein phrog_827 Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 8537 9022
YP_009287184.1 NC_031071_p7 hypothetical protein phrog_1278 single strand DNA binding protein DNA, RNA and nucleotide metabolism -1 2398 2742
YP_009287213.1 NC_031071_p36 hypothetical protein phrog_10033 unknown function unknown function 1 17977 18276
YP_009287196.1 NC_031071_p19 DNA polymerase phrog_21006 DNA polymerase DNA, RNA and nucleotide metabolism -1 6087 6275
YP_009287199.1 NC_031071_p22 hypothetical protein phrog_11709 unknown function unknown function -1 7547 7693
YP_009287193.1 NC_031071_p16 hypothetical protein phrog_9988 unknown function unknown function -1 5083 5265
YP_009287189.1 NC_031071_p12 transcriptional regulator phrog_10808 transcriptional regulator transcription regulation -1 3988 4173
YP_009287205.1 NC_031071_p28 hypothetical protein phrog_10227 unknown function unknown function 1 12012 12716