Genomic map of Gordonia phage CaptainKirk2 (NC_031072)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_031072
Definition
Gordonia phage CaptainKirk2, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
DB of origin
REFSEQ
Length
47898
Host Name
Gordonia terrae
Host domain
Bacteria
Is prophage?
undef
Number of proteins
79
%GC
67.36
Number of singletons
5
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009287270.1 NC_031072_p53 hypothetical protein phrog_9981 unknown function unknown function 1 35562 35735
YP_009287268.1 NC_031072_p51 HTH DNA binding protein phrog_664 DNA binding protein DNA, RNA and nucleotide metabolism 1 34868 35230
YP_009287241.1 NC_031072_p24 holin phrog_10261 membrane protein moron, auxiliary metabolic gene and host takeover 1 20721 21179
YP_009287278.1 NC_031072_p61 hypothetical protein phrog_12075 membrane protein moron, auxiliary metabolic gene and host takeover 1 39565 39777
YP_009287237.1 NC_031072_p20 lysin A, L-Ala-D-Glu peptidase domain phrog_1512 endolysin lysis 1 18337 19041
YP_009287221.1 NC_031072_p4 capsid maturation protease phrog_3894 head maturation protease head and packaging 1 3316 4728
YP_009287224.1 NC_031072_p7 head-to-tail connector protein phrog_2322 head-tail connector protein connector 1 6142 6570
YP_009287290.1 NC_031072_p73 hypothetical protein phrog_20666 unknown function unknown function 1 43724 44179
YP_009287231.1 NC_031072_p14 major tail protein phrog_117 major tail protein tail 1 8682 9320
YP_009287235.1 NC_031072_p18 minor tail protein phrog_106 minor tail protein tail 1 15817 16677
YP_009287266.1 NC_031072_p49 hypothetical protein phrog_28200 unknown function unknown function 1 34201 34647
YP_009287257.1 NC_031072_p40 integrase phrog_1 integrase integration and excision -1 30687 31496
YP_009287271.1 NC_031072_p54 hypothetical protein phrog_1622 unknown function unknown function 1 35741 35971
YP_009287287.1 NC_031072_p70 hypothetical protein phrog_10260 unknown function unknown function 1 42213 42356
YP_009287233.1 NC_031072_p16 tail assembly chaperone phrog_5010 tail assembly chaperone tail 1 9423 9833
YP_009287218.1 NC_031072_p1 terminase small subunit phrog_1496 terminase small subunit head and packaging 1 56 397
YP_009287288.1 NC_031072_p71 hypothetical protein phrog_3171 replication initiation protein DNA, RNA and nucleotide metabolism 1 42346 43434
YP_009287265.1 NC_031072_p48 hypothetical protein phrog_9909 unknown function unknown function 1 33902 34204
YP_009287292.1 NC_031072_p75 resolvase phrog_159 RuvC-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 45228 45818
YP_009287239.1 NC_031072_p22 holin phrog_443 holin lysis 1 19955 20416
YP_009287269.1 NC_031072_p52 hypothetical protein phrog_5984 unknown function unknown function 1 35227 35565
YP_009287247.1 NC_031072_p30 minor tail protein phrog_25867 tail protein tail 1 25252 27144
YP_009287286.1 NC_031072_p69 HNH endonuclease phrog_464 unknown function unknown function 1 41893 42204
YP_009287260.1 NC_031072_p43 hypothetical protein singleton unknown function unknown function -1 32402 32659
YP_009287272.1 NC_031072_p55 hypothetical protein phrog_6877 unknown function unknown function 1 35968 36312
YP_009287254.1 NC_031072_p37 hypothetical protein phrog_5392 unknown function unknown function -1 29527 29823
YP_009287261.1 NC_031072_p44 hypothetical protein phrog_8218 unknown function unknown function 1 32739 32903
YP_009287274.1 NC_031072_p57 exonuclease phrog_192 DNA polymerase exonuclease subunit DNA, RNA and nucleotide metabolism 1 36662 37249
YP_009287284.1 NC_031072_p67 hypothetical protein phrog_12575 unknown function unknown function 1 41136 41528
YP_009287282.1 NC_031072_p65 hypothetical protein phrog_15149 unknown function unknown function 1 40626 40928
YP_009287234.1 NC_031072_p17 tape measure protein phrog_4197 tail length tape measure protein tail 1 10277 15820
YP_009287294.1 NC_031072_p77 hypothetical protein phrog_908 unknown function unknown function 1 46000 46776
YP_009287222.1 NC_031072_p5 scaffolding protein phrog_673 head scaffolding protein head and packaging 1 4730 5182
YP_009287262.1 NC_031072_p45 hypothetical protein singleton unknown function unknown function 1 32900 33415
YP_009287246.1 NC_031072_p29 hypothetical protein phrog_8055 unknown function unknown function 1 24924 25259
YP_009287295.1 NC_031072_p78 hypothetical protein phrog_33634 unknown function unknown function 1 46773 47240
YP_009287219.1 NC_031072_p2 terminase large subunit phrog_9 terminase large subunit head and packaging 1 360 1928
YP_009287289.1 NC_031072_p72 hypothetical protein phrog_2857 tail fiber protein tail 1 43431 43727
YP_009287267.1 NC_031072_p50 hypothetical protein phrog_11014 unknown function unknown function 1 34644 34871
YP_009287251.1 NC_031072_p34 hypothetical protein phrog_6153 unknown function unknown function -1 28392 28619
YP_009287293.1 NC_031072_p76 hypothetical protein phrog_12987 DNA binding protein DNA, RNA and nucleotide metabolism 1 45815 46003
YP_009287253.1 NC_031072_p36 toxin phrog_1213 RelE-like toxin moron, auxiliary metabolic gene and host takeover -1 28985 29245
YP_009287245.1 NC_031072_p28 minor tail protein phrog_737 minor tail protein tail 1 23407 24924
YP_009287250.1 NC_031072_p33 hypothetical protein singleton unknown function unknown function -1 28145 28336
YP_009287242.1 NC_031072_p25 lysin B phrog_102 endolysin lysis 1 21173 21976
YP_009287275.1 NC_031072_p58 exonuclease phrog_434 RecE-like recombination exonuclease DNA, RNA and nucleotide metabolism 1 37249 38178
YP_009287256.1 NC_031072_p39 hypothetical protein phrog_22923 unknown function unknown function 1 30259 30690
YP_009287252.1 NC_031072_p35 antitoxin phrog_2268 antitoxin from a toxin-antitoxin system moron, auxiliary metabolic gene and host takeover -1 28743 28988
YP_009287230.1 NC_031072_p13 head-to-tail connector protein phrog_123 tail terminator connector 1 8157 8576
YP_009287249.1 NC_031072_p32 hypothetical protein singleton unknown function unknown function -1 27832 28104
YP_009287226.1 NC_031072_p9 head-to-tail connector protein phrog_501 head closure Hc1 connector 1 6959 7321
YP_009287291.1 NC_031072_p74 hypothetical protein phrog_11256 DNA binding protein DNA, RNA and nucleotide metabolism 1 44176 45231
YP_009287244.1 NC_031072_p27 minor tail protein phrog_4120 minor tail protein tail 1 22340 23407
YP_009287220.1 NC_031072_p3 portal protein phrog_113 portal protein head and packaging 1 1940 3316
YP_009287264.1 NC_031072_p47 hypothetical protein phrog_9588 unknown function unknown function 1 33591 33905
YP_009287243.1 NC_031072_p26 hypothetical protein phrog_9406 unknown function unknown function 1 21973 22347
YP_009287273.1 NC_031072_p56 hypothetical protein phrog_572 unknown function unknown function 1 36312 36665
YP_009287227.1 NC_031072_p10 hypothetical protein phrog_16006 unknown function unknown function 1 7330 7590
YP_009287236.1 NC_031072_p19 minor tail protein phrog_110 minor tail protein tail 1 16674 18320
YP_009287238.1 NC_031072_p21 lysin A, glycosyl hydrolase domain phrog_3084 endolysin lysis 1 19041 19952
YP_009287280.1 NC_031072_p63 hypothetical protein phrog_10784 membrane protein moron, auxiliary metabolic gene and host takeover 1 40262 40444
YP_009287279.1 NC_031072_p62 hypothetical protein phrog_8336 unknown function unknown function 1 39761 40258
YP_009287283.1 NC_031072_p66 hypothetical protein phrog_11360 unknown function unknown function 1 40921 41139
YP_009287225.1 NC_031072_p8 head-to-tail connector protein phrog_137 head-tail adaptor Ad1 connector 1 6567 6959
YP_009287276.1 NC_031072_p59 ssDNA binding protein phrog_2780 RecT-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 38175 39266
YP_009287258.1 NC_031072_p41 hypothetical protein phrog_34171 unknown function unknown function -1 31677 31937
YP_009287296.1 NC_031072_p79 HNH endonuclease phrog_1808 HNH endonuclease DNA, RNA and nucleotide metabolism 1 47468 47830
YP_009287285.1 NC_031072_p68 hypothetical protein phrog_13233 unknown function unknown function 1 41525 41836
YP_009287248.1 NC_031072_p31 hypothetical protein singleton unknown function unknown function 1 27141 27830
YP_009287259.1 NC_031072_p42 immunity repressor phrog_2328 transcriptional repressor transcription regulation -1 31934 32356
YP_009287263.1 NC_031072_p46 hypothetical protein phrog_6554 unknown function unknown function 1 33412 33594
YP_009287240.1 NC_031072_p23 holin phrog_11800 membrane protein moron, auxiliary metabolic gene and host takeover 1 20480 20734
YP_009287255.1 NC_031072_p38 hypothetical protein phrog_3 transcriptional repressor transcription regulation 1 29946 30212
YP_009287223.1 NC_031072_p6 major capsid protein phrog_1650 major head protein head and packaging 1 5209 6138
YP_009287229.1 NC_031072_p12 head-to-tail connector protein phrog_5837 head closure Hc1 connector 1 7873 8160
YP_009287281.1 NC_031072_p64 hypothetical protein phrog_10682 unknown function unknown function 1 40441 40629
YP_009287277.1 NC_031072_p60 hypothetical protein phrog_8105 unknown function unknown function 1 39263 39568
YP_009287228.1 NC_031072_p11 head-to-tail connector protein phrog_9658 head-tail connector protein connector 1 7587 7880
YP_009287232.1 NC_031072_p15 tail assembly chaperone phrog_8183 tail assembly chaperone tail 1 9423 10207