| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_031072 |
Definition |
Gordonia phage CaptainKirk2, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
47898 |
Host Name |
Gordonia terrae |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
79 |
%GC |
67.36 |
Number of singletons |
5 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009287270.1 | NC_031072_p53 | hypothetical protein | phrog_9981 | unknown function | unknown function | 1 | 35562 | 35735 |
| YP_009287268.1 | NC_031072_p51 | HTH DNA binding protein | phrog_664 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 34868 | 35230 |
| YP_009287241.1 | NC_031072_p24 | holin | phrog_10261 | membrane protein | moron, auxiliary metabolic gene and host takeover | 1 | 20721 | 21179 |
| YP_009287278.1 | NC_031072_p61 | hypothetical protein | phrog_12075 | membrane protein | moron, auxiliary metabolic gene and host takeover | 1 | 39565 | 39777 |
| YP_009287237.1 | NC_031072_p20 | lysin A, L-Ala-D-Glu peptidase domain | phrog_1512 | endolysin | lysis | 1 | 18337 | 19041 |
| YP_009287221.1 | NC_031072_p4 | capsid maturation protease | phrog_3894 | head maturation protease | head and packaging | 1 | 3316 | 4728 |
| YP_009287224.1 | NC_031072_p7 | head-to-tail connector protein | phrog_2322 | head-tail connector protein | connector | 1 | 6142 | 6570 |
| YP_009287290.1 | NC_031072_p73 | hypothetical protein | phrog_20666 | unknown function | unknown function | 1 | 43724 | 44179 |
| YP_009287231.1 | NC_031072_p14 | major tail protein | phrog_117 | major tail protein | tail | 1 | 8682 | 9320 |
| YP_009287235.1 | NC_031072_p18 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 15817 | 16677 |
| YP_009287266.1 | NC_031072_p49 | hypothetical protein | phrog_28200 | unknown function | unknown function | 1 | 34201 | 34647 |
| YP_009287257.1 | NC_031072_p40 | integrase | phrog_1 | integrase | integration and excision | -1 | 30687 | 31496 |
| YP_009287271.1 | NC_031072_p54 | hypothetical protein | phrog_1622 | unknown function | unknown function | 1 | 35741 | 35971 |
| YP_009287287.1 | NC_031072_p70 | hypothetical protein | phrog_10260 | unknown function | unknown function | 1 | 42213 | 42356 |
| YP_009287233.1 | NC_031072_p16 | tail assembly chaperone | phrog_5010 | tail assembly chaperone | tail | 1 | 9423 | 9833 |
| YP_009287218.1 | NC_031072_p1 | terminase small subunit | phrog_1496 | terminase small subunit | head and packaging | 1 | 56 | 397 |
| YP_009287288.1 | NC_031072_p71 | hypothetical protein | phrog_3171 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 42346 | 43434 |
| YP_009287265.1 | NC_031072_p48 | hypothetical protein | phrog_9909 | unknown function | unknown function | 1 | 33902 | 34204 |
| YP_009287292.1 | NC_031072_p75 | resolvase | phrog_159 | RuvC-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 45228 | 45818 |
| YP_009287239.1 | NC_031072_p22 | holin | phrog_443 | holin | lysis | 1 | 19955 | 20416 |
| YP_009287269.1 | NC_031072_p52 | hypothetical protein | phrog_5984 | unknown function | unknown function | 1 | 35227 | 35565 |
| YP_009287247.1 | NC_031072_p30 | minor tail protein | phrog_25867 | tail protein | tail | 1 | 25252 | 27144 |
| YP_009287286.1 | NC_031072_p69 | HNH endonuclease | phrog_464 | unknown function | unknown function | 1 | 41893 | 42204 |
| YP_009287260.1 | NC_031072_p43 | hypothetical protein | singleton | unknown function | unknown function | -1 | 32402 | 32659 |
| YP_009287272.1 | NC_031072_p55 | hypothetical protein | phrog_6877 | unknown function | unknown function | 1 | 35968 | 36312 |
| YP_009287254.1 | NC_031072_p37 | hypothetical protein | phrog_5392 | unknown function | unknown function | -1 | 29527 | 29823 |
| YP_009287261.1 | NC_031072_p44 | hypothetical protein | phrog_8218 | unknown function | unknown function | 1 | 32739 | 32903 |
| YP_009287274.1 | NC_031072_p57 | exonuclease | phrog_192 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 36662 | 37249 |
| YP_009287284.1 | NC_031072_p67 | hypothetical protein | phrog_12575 | unknown function | unknown function | 1 | 41136 | 41528 |
| YP_009287282.1 | NC_031072_p65 | hypothetical protein | phrog_15149 | unknown function | unknown function | 1 | 40626 | 40928 |
| YP_009287234.1 | NC_031072_p17 | tape measure protein | phrog_4197 | tail length tape measure protein | tail | 1 | 10277 | 15820 |
| YP_009287294.1 | NC_031072_p77 | hypothetical protein | phrog_908 | unknown function | unknown function | 1 | 46000 | 46776 |
| YP_009287222.1 | NC_031072_p5 | scaffolding protein | phrog_673 | head scaffolding protein | head and packaging | 1 | 4730 | 5182 |
| YP_009287262.1 | NC_031072_p45 | hypothetical protein | singleton | unknown function | unknown function | 1 | 32900 | 33415 |
| YP_009287246.1 | NC_031072_p29 | hypothetical protein | phrog_8055 | unknown function | unknown function | 1 | 24924 | 25259 |
| YP_009287295.1 | NC_031072_p78 | hypothetical protein | phrog_33634 | unknown function | unknown function | 1 | 46773 | 47240 |
| YP_009287219.1 | NC_031072_p2 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 360 | 1928 |
| YP_009287289.1 | NC_031072_p72 | hypothetical protein | phrog_2857 | tail fiber protein | tail | 1 | 43431 | 43727 |
| YP_009287267.1 | NC_031072_p50 | hypothetical protein | phrog_11014 | unknown function | unknown function | 1 | 34644 | 34871 |
| YP_009287251.1 | NC_031072_p34 | hypothetical protein | phrog_6153 | unknown function | unknown function | -1 | 28392 | 28619 |
| YP_009287293.1 | NC_031072_p76 | hypothetical protein | phrog_12987 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 45815 | 46003 |
| YP_009287253.1 | NC_031072_p36 | toxin | phrog_1213 | RelE-like toxin | moron, auxiliary metabolic gene and host takeover | -1 | 28985 | 29245 |
| YP_009287245.1 | NC_031072_p28 | minor tail protein | phrog_737 | minor tail protein | tail | 1 | 23407 | 24924 |
| YP_009287250.1 | NC_031072_p33 | hypothetical protein | singleton | unknown function | unknown function | -1 | 28145 | 28336 |
| YP_009287242.1 | NC_031072_p25 | lysin B | phrog_102 | endolysin | lysis | 1 | 21173 | 21976 |
| YP_009287275.1 | NC_031072_p58 | exonuclease | phrog_434 | RecE-like recombination exonuclease | DNA, RNA and nucleotide metabolism | 1 | 37249 | 38178 |
| YP_009287256.1 | NC_031072_p39 | hypothetical protein | phrog_22923 | unknown function | unknown function | 1 | 30259 | 30690 |
| YP_009287252.1 | NC_031072_p35 | antitoxin | phrog_2268 | antitoxin from a toxin-antitoxin system | moron, auxiliary metabolic gene and host takeover | -1 | 28743 | 28988 |
| YP_009287230.1 | NC_031072_p13 | head-to-tail connector protein | phrog_123 | tail terminator | connector | 1 | 8157 | 8576 |
| YP_009287249.1 | NC_031072_p32 | hypothetical protein | singleton | unknown function | unknown function | -1 | 27832 | 28104 |
| YP_009287226.1 | NC_031072_p9 | head-to-tail connector protein | phrog_501 | head closure Hc1 | connector | 1 | 6959 | 7321 |
| YP_009287291.1 | NC_031072_p74 | hypothetical protein | phrog_11256 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 44176 | 45231 |
| YP_009287244.1 | NC_031072_p27 | minor tail protein | phrog_4120 | minor tail protein | tail | 1 | 22340 | 23407 |
| YP_009287220.1 | NC_031072_p3 | portal protein | phrog_113 | portal protein | head and packaging | 1 | 1940 | 3316 |
| YP_009287264.1 | NC_031072_p47 | hypothetical protein | phrog_9588 | unknown function | unknown function | 1 | 33591 | 33905 |
| YP_009287243.1 | NC_031072_p26 | hypothetical protein | phrog_9406 | unknown function | unknown function | 1 | 21973 | 22347 |
| YP_009287273.1 | NC_031072_p56 | hypothetical protein | phrog_572 | unknown function | unknown function | 1 | 36312 | 36665 |
| YP_009287227.1 | NC_031072_p10 | hypothetical protein | phrog_16006 | unknown function | unknown function | 1 | 7330 | 7590 |
| YP_009287236.1 | NC_031072_p19 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 16674 | 18320 |
| YP_009287238.1 | NC_031072_p21 | lysin A, glycosyl hydrolase domain | phrog_3084 | endolysin | lysis | 1 | 19041 | 19952 |
| YP_009287280.1 | NC_031072_p63 | hypothetical protein | phrog_10784 | membrane protein | moron, auxiliary metabolic gene and host takeover | 1 | 40262 | 40444 |
| YP_009287279.1 | NC_031072_p62 | hypothetical protein | phrog_8336 | unknown function | unknown function | 1 | 39761 | 40258 |
| YP_009287283.1 | NC_031072_p66 | hypothetical protein | phrog_11360 | unknown function | unknown function | 1 | 40921 | 41139 |
| YP_009287225.1 | NC_031072_p8 | head-to-tail connector protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 6567 | 6959 |
| YP_009287276.1 | NC_031072_p59 | ssDNA binding protein | phrog_2780 | RecT-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 38175 | 39266 |
| YP_009287258.1 | NC_031072_p41 | hypothetical protein | phrog_34171 | unknown function | unknown function | -1 | 31677 | 31937 |
| YP_009287296.1 | NC_031072_p79 | HNH endonuclease | phrog_1808 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 47468 | 47830 |
| YP_009287285.1 | NC_031072_p68 | hypothetical protein | phrog_13233 | unknown function | unknown function | 1 | 41525 | 41836 |
| YP_009287248.1 | NC_031072_p31 | hypothetical protein | singleton | unknown function | unknown function | 1 | 27141 | 27830 |
| YP_009287259.1 | NC_031072_p42 | immunity repressor | phrog_2328 | transcriptional repressor | transcription regulation | -1 | 31934 | 32356 |
| YP_009287263.1 | NC_031072_p46 | hypothetical protein | phrog_6554 | unknown function | unknown function | 1 | 33412 | 33594 |
| YP_009287240.1 | NC_031072_p23 | holin | phrog_11800 | membrane protein | moron, auxiliary metabolic gene and host takeover | 1 | 20480 | 20734 |
| YP_009287255.1 | NC_031072_p38 | hypothetical protein | phrog_3 | transcriptional repressor | transcription regulation | 1 | 29946 | 30212 |
| YP_009287223.1 | NC_031072_p6 | major capsid protein | phrog_1650 | major head protein | head and packaging | 1 | 5209 | 6138 |
| YP_009287229.1 | NC_031072_p12 | head-to-tail connector protein | phrog_5837 | head closure Hc1 | connector | 1 | 7873 | 8160 |
| YP_009287281.1 | NC_031072_p64 | hypothetical protein | phrog_10682 | unknown function | unknown function | 1 | 40441 | 40629 |
| YP_009287277.1 | NC_031072_p60 | hypothetical protein | phrog_8105 | unknown function | unknown function | 1 | 39263 | 39568 |
| YP_009287228.1 | NC_031072_p11 | head-to-tail connector protein | phrog_9658 | head-tail connector protein | connector | 1 | 7587 | 7880 |
| YP_009287232.1 | NC_031072_p15 | tail assembly chaperone | phrog_8183 | tail assembly chaperone | tail | 1 | 9423 | 10207 |