| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_031075 |
Definition |
Lactococcus phage M5938, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Ceduovirus. |
DB of origin |
REFSEQ |
Length |
22240 |
Host Name |
Lactococcus lactis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
38 |
%GC |
35.86 |
Number of singletons |
0 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009287663.1 | NC_031075_p25 | capsid and scaffold protein | phrog_3270 | head maturation protease | head and packaging | 1 | 9898 | 11340 |
| YP_009287669.1 | NC_031075_p31 | tail length tape-measure protein | phrog_9145 | tail length tape measure protein | tail | 1 | 13610 | 15472 |
| YP_009287665.1 | NC_031075_p27 | tail fibers protein | phrog_2634 | major tail protein | tail | 1 | 12081 | 12698 |
| YP_009287666.1 | NC_031075_p28 | hypothetical protein | phrog_10561 | unknown function | unknown function | 1 | 12771 | 13025 |
| YP_009287658.1 | NC_031075_p20 | hypothetical protein | phrog_11709 | unknown function | unknown function | -1 | 6896 | 7042 |
| YP_009287676.1 | NC_031075_p38 | holin | phrog_9407 | holin | lysis | 1 | 21787 | 22077 |
| YP_009287649.1 | NC_031075_p11 | hypothetical protein | phrog_1632 | unknown function | unknown function | -1 | 3526 | 3771 |
| YP_009287643.1 | NC_031075_p5 | hypothetical protein | phrog_1317 | unknown function | unknown function | -1 | 1452 | 1952 |
| YP_009287659.1 | NC_031075_p21 | hypothetical protein | phrog_10074 | unknown function | unknown function | 1 | 7726 | 7875 |
| YP_009287672.1 | NC_031075_p34 | hypothetical protein | phrog_10033 | unknown function | unknown function | 1 | 17324 | 17623 |
| YP_009287644.1 | NC_031075_p6 | hypothetical protein | phrog_1295 | unknown function | unknown function | -1 | 1949 | 2113 |
| YP_009287674.1 | NC_031075_p36 | capsid and scaffold protein | phrog_10067 | virion structural protein | head and packaging | 1 | 19538 | 20521 |
| YP_009287642.1 | NC_031075_p4 | hypothetical protein | phrog_10525 | unknown function | unknown function | -1 | 1127 | 1450 |
| YP_009287664.1 | NC_031075_p26 | hypothetical protein | phrog_10227 | unknown function | unknown function | 1 | 11359 | 12063 |
| YP_009287640.1 | NC_031075_p2 | hypothetical protein | phrog_10769 | unknown function | unknown function | -1 | 436 | 810 |
| YP_009287661.1 | NC_031075_p23 | N-acetylmuramoyl-L-alanine amidase | phrog_7 | endolysin | lysis | 1 | 8402 | 9097 |
| YP_009287662.1 | NC_031075_p24 | capsid and scaffold protein | phrog_10159 | virion structural protein | head and packaging | 1 | 9108 | 9947 |
| YP_009287671.1 | NC_031075_p33 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 15768 | 17324 |
| YP_009287646.1 | NC_031075_p8 | essential recombination function protein | phrog_155 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 2563 | 3102 |
| YP_009287639.1 | NC_031075_p1 | transcriptional regulator | phrog_12561 | transcriptional regulator | transcription regulation | -1 | 265 | 435 |
| YP_009287651.1 | NC_031075_p13 | hypothetical protein | phrog_3530 | unknown function | unknown function | -1 | 3942 | 4382 |
| YP_009287652.1 | NC_031075_p14 | hypothetical protein | phrog_1225 | unknown function | unknown function | -1 | 4379 | 4729 |
| YP_009287670.1 | NC_031075_p32 | hypothetical protein | phrog_119 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 15469 | 15756 |
| YP_009287657.1 | NC_031075_p19 | hypothetical protein | phrog_10138 | unknown function | unknown function | -1 | 6699 | 6899 |
| YP_009287673.1 | NC_031075_p35 | hypothetical protein | phrog_10648 | unknown function | unknown function | 1 | 17620 | 19536 |
| YP_009287660.1 | NC_031075_p22 | hypothetical protein | phrog_827 | Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 7886 | 8371 |
| YP_009287668.1 | NC_031075_p30 | hypothetical protein | phrog_10523 | unknown function | unknown function | 1 | 13213 | 13617 |
| YP_009287653.1 | NC_031075_p15 | hypothetical protein | phrog_9988 | unknown function | unknown function | -1 | 4729 | 4902 |
| YP_009287656.1 | NC_031075_p18 | hypothetical protein | phrog_1284 | unknown function | unknown function | -1 | 5798 | 6697 |
| YP_009287645.1 | NC_031075_p7 | hypothetical protein | phrog_1278 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 2126 | 2497 |
| YP_009287675.1 | NC_031075_p37 | capsid and scaffold protein | phrog_10326 | virion structural protein | head and packaging | 1 | 20514 | 21764 |
| YP_009287655.1 | NC_031075_p17 | DNA polymerase | phrog_10577 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 5347 | 5727 |
| YP_009287654.1 | NC_031075_p16 | hypothetical protein | phrog_10596 | unknown function | unknown function | -1 | 4958 | 5347 |
| YP_009287650.1 | NC_031075_p12 | transcriptional regulator | phrog_10808 | transcriptional regulator | transcription regulation | -1 | 3743 | 3928 |
| YP_009287641.1 | NC_031075_p3 | hypothetical protein | phrog_10148 | unknown function | unknown function | -1 | 832 | 1134 |
| YP_009287667.1 | NC_031075_p29 | hypothetical protein | phrog_12461 | unknown function | unknown function | 1 | 13067 | 13237 |
| YP_009287647.1 | NC_031075_p9 | hypothetical protein | phrog_10559 | unknown function | unknown function | -1 | 3102 | 3254 |
| YP_009287648.1 | NC_031075_p10 | hypothetical protein | phrog_11155 | unknown function | unknown function | -1 | 3323 | 3526 |