Genomic map of Lactococcus phage M5938 (NC_031075)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_031075
Definition
Lactococcus phage M5938, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Ceduovirus.
DB of origin
REFSEQ
Length
22240
Host Name
Lactococcus lactis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
38
%GC
35.86
Number of singletons
0
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009287663.1 NC_031075_p25 capsid and scaffold protein phrog_3270 head maturation protease head and packaging 1 9898 11340
YP_009287669.1 NC_031075_p31 tail length tape-measure protein phrog_9145 tail length tape measure protein tail 1 13610 15472
YP_009287665.1 NC_031075_p27 tail fibers protein phrog_2634 major tail protein tail 1 12081 12698
YP_009287666.1 NC_031075_p28 hypothetical protein phrog_10561 unknown function unknown function 1 12771 13025
YP_009287658.1 NC_031075_p20 hypothetical protein phrog_11709 unknown function unknown function -1 6896 7042
YP_009287676.1 NC_031075_p38 holin phrog_9407 holin lysis 1 21787 22077
YP_009287649.1 NC_031075_p11 hypothetical protein phrog_1632 unknown function unknown function -1 3526 3771
YP_009287643.1 NC_031075_p5 hypothetical protein phrog_1317 unknown function unknown function -1 1452 1952
YP_009287659.1 NC_031075_p21 hypothetical protein phrog_10074 unknown function unknown function 1 7726 7875
YP_009287672.1 NC_031075_p34 hypothetical protein phrog_10033 unknown function unknown function 1 17324 17623
YP_009287644.1 NC_031075_p6 hypothetical protein phrog_1295 unknown function unknown function -1 1949 2113
YP_009287674.1 NC_031075_p36 capsid and scaffold protein phrog_10067 virion structural protein head and packaging 1 19538 20521
YP_009287642.1 NC_031075_p4 hypothetical protein phrog_10525 unknown function unknown function -1 1127 1450
YP_009287664.1 NC_031075_p26 hypothetical protein phrog_10227 unknown function unknown function 1 11359 12063
YP_009287640.1 NC_031075_p2 hypothetical protein phrog_10769 unknown function unknown function -1 436 810
YP_009287661.1 NC_031075_p23 N-acetylmuramoyl-L-alanine amidase phrog_7 endolysin lysis 1 8402 9097
YP_009287662.1 NC_031075_p24 capsid and scaffold protein phrog_10159 virion structural protein head and packaging 1 9108 9947
YP_009287671.1 NC_031075_p33 terminase large subunit phrog_9 terminase large subunit head and packaging 1 15768 17324
YP_009287646.1 NC_031075_p8 essential recombination function protein phrog_155 Erf-like ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 2563 3102
YP_009287639.1 NC_031075_p1 transcriptional regulator phrog_12561 transcriptional regulator transcription regulation -1 265 435
YP_009287651.1 NC_031075_p13 hypothetical protein phrog_3530 unknown function unknown function -1 3942 4382
YP_009287652.1 NC_031075_p14 hypothetical protein phrog_1225 unknown function unknown function -1 4379 4729
YP_009287670.1 NC_031075_p32 hypothetical protein phrog_119 HNH endonuclease DNA, RNA and nucleotide metabolism 1 15469 15756
YP_009287657.1 NC_031075_p19 hypothetical protein phrog_10138 unknown function unknown function -1 6699 6899
YP_009287673.1 NC_031075_p35 hypothetical protein phrog_10648 unknown function unknown function 1 17620 19536
YP_009287660.1 NC_031075_p22 hypothetical protein phrog_827 Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 7886 8371
YP_009287668.1 NC_031075_p30 hypothetical protein phrog_10523 unknown function unknown function 1 13213 13617
YP_009287653.1 NC_031075_p15 hypothetical protein phrog_9988 unknown function unknown function -1 4729 4902
YP_009287656.1 NC_031075_p18 hypothetical protein phrog_1284 unknown function unknown function -1 5798 6697
YP_009287645.1 NC_031075_p7 hypothetical protein phrog_1278 single strand DNA binding protein DNA, RNA and nucleotide metabolism -1 2126 2497
YP_009287675.1 NC_031075_p37 capsid and scaffold protein phrog_10326 virion structural protein head and packaging 1 20514 21764
YP_009287655.1 NC_031075_p17 DNA polymerase phrog_10577 DNA polymerase DNA, RNA and nucleotide metabolism -1 5347 5727
YP_009287654.1 NC_031075_p16 hypothetical protein phrog_10596 unknown function unknown function -1 4958 5347
YP_009287650.1 NC_031075_p12 transcriptional regulator phrog_10808 transcriptional regulator transcription regulation -1 3743 3928
YP_009287641.1 NC_031075_p3 hypothetical protein phrog_10148 unknown function unknown function -1 832 1134
YP_009287667.1 NC_031075_p29 hypothetical protein phrog_12461 unknown function unknown function 1 13067 13237
YP_009287647.1 NC_031075_p9 hypothetical protein phrog_10559 unknown function unknown function -1 3102 3254
YP_009287648.1 NC_031075_p10 hypothetical protein phrog_11155 unknown function unknown function -1 3323 3526