| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_031076 |
Definition |
Propionibacterium phage PFR1, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Pulverervirus. |
DB of origin |
REFSEQ |
Length |
38071 |
Host Name |
Propionibacterium freudenreichii |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
56 |
%GC |
64.84 |
Number of singletons |
0 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009287679.1 | NC_031076_p3 | hypothetical protein | phrog_2662 | portal protein | head and packaging | 1 | 2000 | 4156 |
| YP_009287732.1 | NC_031076_p56 | hypothetical protein | phrog_338 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 37336 | 37851 |
| YP_009287687.1 | NC_031076_p11 | hypothetical protein | phrog_393 | tail assembly chaperone | tail | 1 | 8805 | 9451 |
| YP_009287720.1 | NC_031076_p44 | hypothetical protein | phrog_16347 | unknown function | unknown function | 1 | 31221 | 31652 |
| YP_009287684.1 | NC_031076_p8 | hypothetical protein | phrog_32076 | unknown function | unknown function | 1 | 7277 | 7696 |
| YP_009287682.1 | NC_031076_p6 | hypothetical protein | phrog_442 | head-tail adaptor | connector | 1 | 6360 | 6935 |
| YP_009287691.1 | NC_031076_p15 | hypothetical protein | phrog_1887 | tail protein | tail | 1 | 13778 | 14950 |
| YP_009287699.1 | NC_031076_p23 | hypothetical protein | phrog_15934 | unknown function | unknown function | -1 | 19025 | 19912 |
| YP_009287707.1 | NC_031076_p31 | hypothetical protein | phrog_5931 | unknown function | unknown function | 1 | 24480 | 25334 |
| YP_009287717.1 | NC_031076_p41 | hypothetical protein | phrog_22295 | unknown function | unknown function | 1 | 30224 | 30463 |
| YP_009287683.1 | NC_031076_p7 | hypothetical protein | phrog_501 | head closure Hc1 | connector | 1 | 6932 | 7273 |
| YP_009287697.1 | NC_031076_p21 | hypothetical protein | phrog_291 | endolysin | lysis | 1 | 17734 | 18570 |
| YP_009287715.1 | NC_031076_p39 | DNA methylase | phrog_67 | DNA methyltransferase | other | 1 | 29215 | 30003 |
| YP_009287702.1 | NC_031076_p26 | hypothetical protein | phrog_1 | integrase | integration and excision | -1 | 21039 | 22175 |
| YP_009287705.1 | NC_031076_p29 | hypothetical protein | phrog_4583 | transcriptional repressor | transcription regulation | 1 | 23492 | 23764 |
| YP_009287714.1 | NC_031076_p38 | hypothetical protein | phrog_11615 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 28805 | 29218 |
| YP_009287725.1 | NC_031076_p49 | hypothetical protein | phrog_22143 | unknown function | unknown function | 1 | 34243 | 34713 |
| YP_009287727.1 | NC_031076_p51 | hypothetical protein | phrog_33506 | unknown function | unknown function | 1 | 35323 | 35763 |
| YP_009287713.1 | NC_031076_p37 | hypothetical protein | phrog_472 | WhiB transcriptional factor | transcription regulation | 1 | 28506 | 28805 |
| YP_009287685.1 | NC_031076_p9 | hypothetical protein | phrog_123 | tail terminator | connector | 1 | 7693 | 8106 |
| YP_009287731.1 | NC_031076_p55 | hypothetical protein | phrog_8013 | unknown function | unknown function | 1 | 36479 | 37183 |
| YP_009287712.1 | NC_031076_p36 | hypothetical protein | phrog_148 | RecT-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 27536 | 28372 |
| YP_009287716.1 | NC_031076_p40 | hypothetical protein | phrog_14680 | unknown function | unknown function | 1 | 30000 | 30227 |
| YP_009287695.1 | NC_031076_p19 | hypothetical protein | phrog_10606 | membrane protein | moron, auxiliary metabolic gene and host takeover | 1 | 16983 | 17417 |
| YP_009287722.1 | NC_031076_p46 | hypothetical protein | phrog_23424 | unknown function | unknown function | 1 | 32758 | 33003 |
| YP_009287726.1 | NC_031076_p50 | single-stranded DNA binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 34850 | 35323 |
| YP_009287721.1 | NC_031076_p45 | hypothetical protein | phrog_116 | DNA methyltransferase | other | 1 | 31715 | 32761 |
| YP_009287681.1 | NC_031076_p5 | hypothetical protein | phrog_10 | major head protein | head and packaging | 1 | 4989 | 6275 |
| YP_009287728.1 | NC_031076_p52 | hypothetical protein | phrog_9864 | unknown function | unknown function | 1 | 35760 | 35990 |
| YP_009287694.1 | NC_031076_p18 | hypothetical protein | phrog_21056 | minor tail protein | tail | 1 | 15811 | 16983 |
| YP_009287708.1 | NC_031076_p32 | hypothetical protein | phrog_6401 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 25407 | 25640 |
| YP_009287704.1 | NC_031076_p28 | transcriptional regulator | phrog_4583 | transcriptional repressor | transcription regulation | -1 | 23166 | 23426 |
| YP_009287718.1 | NC_031076_p42 | hypothetical protein | phrog_33063 | unknown function | unknown function | 1 | 30702 | 30911 |
| YP_009287680.1 | NC_031076_p4 | hypothetical protein | phrog_80 | head maturation protease | head and packaging | 1 | 4171 | 4992 |
| YP_009287686.1 | NC_031076_p10 | hypothetical protein | phrog_117 | major tail protein | tail | 1 | 8107 | 8706 |
| YP_009287700.1 | NC_031076_p24 | hypothetical protein | phrog_26193 | unknown function | unknown function | -1 | 19953 | 20384 |
| YP_009287730.1 | NC_031076_p54 | hypothetical protein | phrog_18006 | unknown function | unknown function | 1 | 36190 | 36492 |
| YP_009287706.1 | NC_031076_p30 | hypothetical protein | phrog_29861 | unknown function | unknown function | 1 | 23761 | 24480 |
| YP_009287723.1 | NC_031076_p47 | hypothetical protein | phrog_34 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 32984 | 33379 |
| YP_009287689.1 | NC_031076_p13 | hypothetical protein | phrog_971 | endolysin | lysis | 1 | 9476 | 12970 |
| YP_009287724.1 | NC_031076_p48 | hypothetical protein | phrog_2149 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 33401 | 34246 |
| YP_009287701.1 | NC_031076_p25 | hypothetical protein | phrog_27679 | unknown function | unknown function | -1 | 20446 | 20895 |
| YP_009287711.1 | NC_031076_p35 | hypothetical protein | phrog_434 | RecE-like recombination exonuclease | DNA, RNA and nucleotide metabolism | 1 | 26634 | 27539 |
| YP_009287677.1 | NC_031076_p1 | hypothetical protein | phrog_10639 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 1 | 396 |
| YP_009287710.1 | NC_031076_p34 | hypothetical protein | phrog_8332 | unknown function | unknown function | 1 | 25864 | 26598 |
| YP_009287703.1 | NC_031076_p27 | hypothetical protein | phrog_4980 | superinfection exclusion | moron, auxiliary metabolic gene and host takeover | -1 | 22514 | 22984 |
| YP_009287688.1 | NC_031076_p12 | hypothetical protein | phrog_22068 | unknown function | unknown function | 1 | 8805 | 9089 |
| YP_009287693.1 | NC_031076_p17 | hypothetical protein | phrog_14767 | unknown function | unknown function | 1 | 15200 | 15811 |
| YP_009287719.1 | NC_031076_p43 | hypothetical protein | phrog_19369 | unknown function | unknown function | 1 | 30913 | 31224 |
| YP_009287692.1 | NC_031076_p16 | hypothetical protein | phrog_15543 | unknown function | unknown function | 1 | 14947 | 15186 |
| YP_009287698.1 | NC_031076_p22 | hypothetical protein | phrog_443 | holin | lysis | 1 | 18567 | 18905 |
| YP_009287690.1 | NC_031076_p14 | hypothetical protein | phrog_11649 | tail protein | tail | 1 | 12972 | 13781 |
| YP_009287729.1 | NC_031076_p53 | hypothetical protein | phrog_25716 | unknown function | unknown function | 1 | 35987 | 36193 |
| YP_009287678.1 | NC_031076_p2 | hypothetical protein | phrog_9 | terminase large subunit | head and packaging | 1 | 407 | 1978 |
| YP_009287696.1 | NC_031076_p20 | hypothetical protein | phrog_12141 | unknown function | unknown function | 1 | 17414 | 17689 |
| YP_009287709.1 | NC_031076_p33 | hypothetical protein | phrog_36710 | unknown function | unknown function | 1 | 25637 | 25867 |