Genomic map of Escherichia phage vB_EcoM_Alf5 (NC_031082)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_031082
Definition
Escherichia phage vB_EcoM_Alf5, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Ounavirinae; Felixounavirus; Escherichia virus Alf5.
DB of origin
REFSEQ
Length
87662
Host Name
Escherichia coli
Host domain
Bacteria
Is prophage?
undef
Number of proteins
133
%GC
39.01
Number of singletons
0
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009288297.1 NC_031082_p113 ribonucleoside triphosphate reductase beta subunit phrog_86 ribonucleoside diphosphate reductase small subunit DNA, RNA and nucleotide metabolism 1 76059 77132
YP_009288299.1 NC_031082_p115 hypothetical protein phrog_4532 unknown function unknown function 1 77367 77573
YP_009288304.1 NC_031082_p120 hypothetical protein phrog_11929 membrane protein moron, auxiliary metabolic gene and host takeover 1 80909 81109
YP_009288205.1 NC_031082_p21 hypothetical protein phrog_4318 unknown function unknown function 1 11327 11668
YP_009288196.1 NC_031082_p12 phosphatase phrog_335 phosphatase other 1 6926 7711
YP_009288239.1 NC_031082_p55 major capsid protein phrog_29 major head protein head and packaging 1 35601 36710
YP_009288254.1 NC_031082_p70 baseplate component phrog_6 baseplate wedge subunit tail 1 46534 48003
YP_009288197.1 NC_031082_p13 hypothetical protein phrog_5293 unknown function unknown function 1 8226 8432
YP_009288189.1 NC_031082_p5 hypothetical protein phrog_2267 unknown function unknown function 1 4889 5353
YP_009288214.1 NC_031082_p30 hypothetical protein phrog_4459 unknown function unknown function -1 16683 16901
YP_009288187.1 NC_031082_p3 hypothetical protein phrog_600 unknown function unknown function 1 3657 4205
YP_009288260.1 NC_031082_p76 hypothetical protein phrog_4038 unknown function unknown function 1 52971 53342
YP_009288274.1 NC_031082_p90 hypothetical protein phrog_4427 unknown function unknown function -1 60134 60340
YP_009288261.1 NC_031082_p77 thymidylate synthase phrog_160 thymidylate synthase DNA, RNA and nucleotide metabolism -1 53387 54286
YP_009288257.1 NC_031082_p73 tail fiber protein phrog_2097 tail fiber protein tail 1 49168 50316
YP_009288217.1 NC_031082_p33 hypothetical protein phrog_4385 unknown function unknown function -1 17903 18115
YP_009288282.1 NC_031082_p98 hypothetical protein phrog_4251 minor tail protein tail 1 65121 65921
YP_009288230.1 NC_031082_p46 hypothetical protein phrog_2143 unknown function unknown function 1 27542 28099
YP_009288242.1 NC_031082_p58 hypothetical protein phrog_2874 unknown function unknown function 1 37660 38061
YP_009288295.1 NC_031082_p111 ribonucleoside triphosphate reductase alpha subunit phrog_84 ribonucleoside-diphosphate reductase large subunit DNA, RNA and nucleotide metabolism 1 73515 75749
YP_009288306.1 NC_031082_p122 hypothetical protein phrog_1774 unknown function unknown function 1 81498 81797
YP_009288225.1 NC_031082_p41 hypothetical protein phrog_8138 unknown function unknown function -1 21765 21947
YP_009288207.1 NC_031082_p23 hypothetical protein phrog_4559 unknown function unknown function 1 12490 12738
YP_009288220.1 NC_031082_p36 lysin phrog_7 endolysin lysis -1 18953 19417
YP_009288246.1 NC_031082_p62 hypothetical protein phrog_1613 tail assembly chaperone tail 1 40524 40922
YP_009288249.1 NC_031082_p65 hypothetical protein phrog_3721 unknown function unknown function 1 43377 44174
YP_009288226.1 NC_031082_p42 hypothetical protein phrog_4114 unknown function unknown function 1 22176 22547
YP_009288284.1 NC_031082_p100 hypothetical protein phrog_4469 unknown function unknown function 1 66741 66935
YP_009288235.1 NC_031082_p51 hypothetical protein phrog_3977 unknown function unknown function 1 32988 33488
YP_009288203.1 NC_031082_p19 hypothetical protein phrog_3303 unknown function unknown function 1 10394 10936
YP_009288253.1 NC_031082_p69 hypothetical protein phrog_120 baseplate wedge subunit tail 1 46115 46534
YP_009288202.1 NC_031082_p18 hypothetical protein phrog_3623 unknown function unknown function 1 10105 10308
YP_009288310.1 NC_031082_p126 hypothetical protein phrog_4462 unknown function unknown function 1 82859 83179
YP_009288275.1 NC_031082_p91 hypothetical protein phrog_902 unknown function unknown function -1 60351 60608
YP_009288245.1 NC_031082_p61 hypothetical protein phrog_280 virion structural protein head and packaging 1 40004 40450
YP_009288218.1 NC_031082_p34 hypothetical protein phrog_4348 unknown function unknown function -1 18115 18510
YP_009288268.1 NC_031082_p84 hypothetical protein phrog_4332 unknown function unknown function -1 56487 56870
YP_009288221.1 NC_031082_p37 tail protein phrog_3995 tail protein tail -1 19417 20550
YP_009288248.1 NC_031082_p64 tail length tape-measure protein phrog_4036 tail length tape measure protein tail 1 41164 43377
YP_009288240.1 NC_031082_p56 hypothetical protein phrog_1732 unknown function unknown function 1 36732 37181
YP_009288263.1 NC_031082_p79 hypothetical protein phrog_2993 unknown function unknown function -1 54830 55090
YP_009288259.1 NC_031082_p75 hypothetical protein phrog_402 unknown function unknown function 1 52776 52970
YP_009288237.1 NC_031082_p53 head maturation protease phrog_53 head maturation protease head and packaging 1 33832 35178
YP_009288270.1 NC_031082_p86 hypothetical protein phrog_4652 unknown function unknown function -1 57710 58297
YP_009288265.1 NC_031082_p81 hypothetical protein phrog_4116 unknown function unknown function -1 55620 55979
YP_009288232.1 NC_031082_p48 hypothetical protein phrog_4397 unknown function unknown function 1 29682 29882
YP_009288241.1 NC_031082_p57 hypothetical protein phrog_222 tail completion or Neck1 protein connector 1 37181 37663
YP_009288266.1 NC_031082_p82 transcriptional regulatory protein phrog_1373 transcriptional regulator transcription regulation -1 55981 56280
YP_009288264.1 NC_031082_p80 hypothetical protein phrog_4422 unknown function unknown function -1 55091 55606
YP_009288208.1 NC_031082_p24 hypothetical protein phrog_4330 unknown function unknown function -1 14390 15013
YP_009288271.1 NC_031082_p87 hypothetical protein phrog_22006 unknown function unknown function -1 58694 58840
YP_009288213.1 NC_031082_p29 hypothetical protein phrog_4343 unknown function unknown function -1 16183 16686
YP_009288308.1 NC_031082_p124 hypothetical protein phrog_5082 unknown function unknown function 1 82255 82632
YP_009288193.1 NC_031082_p9 hypothetical protein phrog_4453 unknown function unknown function 1 6185 6508
YP_009288313.1 NC_031082_p129 ribose-phosphate pyrophosphokinase phrog_619 ribose-phosphate pyrophosphokinase other 1 84029 84910
YP_009288210.1 NC_031082_p26 hypothetical protein phrog_7193 unknown function unknown function -1 15406 15828
YP_009288277.1 NC_031082_p93 hypothetical protein phrog_4230 unknown function unknown function -1 60741 60959
YP_009288286.1 NC_031082_p102 hypothetical protein phrog_4982 unknown function unknown function 1 68888 69169
YP_009288233.1 NC_031082_p49 terminase large subunit phrog_979 terminase large subunit head and packaging 1 29904 31505
YP_009288287.1 NC_031082_p103 hypothetical protein phrog_4424 unknown function unknown function 1 69166 69315
YP_009288278.1 NC_031082_p94 hypothetical protein phrog_5180 unknown function unknown function -1 60956 61165
YP_009288262.1 NC_031082_p78 dihydrofolate reductase phrog_316 dihydrofolate reductase DNA, RNA and nucleotide metabolism -1 54288 54833
YP_009288303.1 NC_031082_p119 hypothetical protein phrog_8826 unknown function unknown function 1 80571 80906
YP_009288247.1 NC_031082_p63 hypothetical protein phrog_4963 tail assembly chaperone tail 1 40925 41164
YP_009288201.1 NC_031082_p17 hypothetical protein phrog_4327 unknown function unknown function 1 9593 9997
YP_009288267.1 NC_031082_p83 hypothetical protein phrog_4473 unknown function unknown function -1 56273 56485
YP_009288292.1 NC_031082_p108 hypothetical protein phrog_2144 MazG-like pyrophosphatase other 1 72081 72836
YP_009288316.1 NC_031082_p132 hypothetical protein phrog_4262 unknown function unknown function 1 87141 87476
YP_009288188.1 NC_031082_p4 PsET polynucleotide 5'-kinase/3'-phosphatase phrog_3970 polynucleotide kinase other 1 4183 4878
YP_009288206.1 NC_031082_p22 hypothetical protein phrog_4725 unknown function unknown function 1 11890 12420
YP_009288283.1 NC_031082_p99 deoxynucleotide monophosphate kinase phrog_139 deoxynucleoside monophosphate kinase other 1 65983 66726
YP_009288191.1 NC_031082_p7 hypothetical protein phrog_4180 unknown function unknown function 1 5647 5916
YP_009288291.1 NC_031082_p107 hypothetical protein phrog_4442 unknown function unknown function 1 71857 72105
YP_009288315.1 NC_031082_p131 hypothetical protein phrog_20372 unknown function unknown function 1 86791 87135
YP_009288312.1 NC_031082_p128 hypothetical protein phrog_4726 unknown function unknown function 1 83739 84017
YP_009288211.1 NC_031082_p27 hypothetical protein phrog_4457 unknown function unknown function -1 15882 16106
YP_009288231.1 NC_031082_p47 hypothetical protein phrog_2114 unknown function unknown function 1 28551 29285
YP_009288198.1 NC_031082_p14 hypothetical protein phrog_4401 unknown function unknown function 1 8520 8816
YP_009288298.1 NC_031082_p114 glutaredoxin phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism 1 77132 77374
YP_009288279.1 NC_031082_p95 HNH homing endonuclease phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism -1 61217 61768
YP_009288273.1 NC_031082_p89 hypothetical protein phrog_5768 unknown function unknown function -1 59946 60137
YP_009288258.1 NC_031082_p74 tail fiber protein phrog_4277 tail fiber protein tail 1 50363 52696
YP_009288272.1 NC_031082_p88 DNA ligase phrog_114 ATP-dependent DNA ligase DNA, RNA and nucleotide metabolism -1 58844 59944
YP_009288215.1 NC_031082_p31 hypothetical protein phrog_4109 unknown function unknown function -1 16985 17566
YP_009288269.1 NC_031082_p85 hypothetical protein phrog_5926 unknown function unknown function -1 57267 57707
YP_009288307.1 NC_031082_p123 anaerobic nucleoside-triphosphate reductase small subunit phrog_626 anaerobic ribonucleotide reductase small subunit DNA, RNA and nucleotide metabolism 1 81807 82292
YP_009288185.1 NC_031082_p1 rIIA phrog_612 RIIA lysis inhibitor lysis 1 1 2367
YP_009288314.1 NC_031082_p130 nicotinamide phosphoribosyltransferase phrog_448 nicotinamide phosphoribosyl transferase other 1 84956 86737
YP_009288216.1 NC_031082_p32 hypothetical protein phrog_4040 unknown function unknown function -1 17566 17910
YP_009288199.1 NC_031082_p15 hypothetical protein phrog_4375 unknown function unknown function 1 8810 9142
YP_009288209.1 NC_031082_p25 hypothetical protein phrog_4713 unknown function unknown function -1 14952 15416
YP_009288190.1 NC_031082_p6 hypothetical protein phrog_1152 Rz-like spanin lysis 1 5406 5753
YP_009288302.1 NC_031082_p118 anaerobic ribonucleoside-triphosphate reductase phrog_4218 anaerobic ribonucleoside reductase large subunit DNA, RNA and nucleotide metabolism 1 79642 80508
YP_009288234.1 NC_031082_p50 structural protein phrog_113 portal protein head and packaging 1 31522 32988
YP_009288288.1 NC_031082_p104 hypothetical protein phrog_3877 unknown function unknown function 1 69388 70245
YP_009288244.1 NC_031082_p60 structural protein phrog_205 tail sheath tail 1 38636 39988
YP_009288293.1 NC_031082_p109 hypothetical protein phrog_4007 unknown function unknown function 1 72817 73140
YP_009288280.1 NC_031082_p96 DNA polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism -1 61740 64439
YP_009288228.1 NC_031082_p44 hypothetical protein phrog_14433 unknown function unknown function -1 24989 25312
YP_009288224.1 NC_031082_p40 hypothetical protein phrog_5064 unknown function unknown function -1 21550 21783
YP_009288195.1 NC_031082_p11 hypothetical protein phrog_2210 unknown function unknown function 1 6725 6925
YP_009288223.1 NC_031082_p39 hypothetical protein phrog_4034 unknown function unknown function -1 20966 21556
YP_009288256.1 NC_031082_p72 hypothetical protein phrog_4141 unknown function unknown function 1 48863 49165
YP_009288204.1 NC_031082_p20 hypothetical protein phrog_4640 unknown function unknown function 1 11002 11235
YP_009288251.1 NC_031082_p67 hypothetical protein phrog_196 baseplate hub tail 1 44515 45492
YP_009288186.1 NC_031082_p2 rIIB phrog_609 RIIB lysis inhibitor lysis 1 2447 3556
YP_009288192.1 NC_031082_p8 hypothetical protein phrog_4391 unknown function unknown function 1 5913 6182
YP_009288300.1 NC_031082_p116 anaerobic ribonucleoside-triphosphate reductase phrog_487 NrdD-like anaerobic ribonucleotide reductase large subunit moron, auxiliary metabolic gene and host takeover 1 77622 78821
YP_009288194.1 NC_031082_p10 hypothetical protein phrog_13034 unknown function unknown function 1 6486 6713
YP_009288296.1 NC_031082_p112 hypothetical protein phrog_2652 unknown function unknown function 1 75805 76062
YP_009288317.1 NC_031082_p133 hypothetical protein phrog_3931 unknown function unknown function 1 87458 87634
YP_009288250.1 NC_031082_p66 hypothetical protein phrog_349 virion structural protein head and packaging 1 44174 44515
YP_009288219.1 NC_031082_p35 hypothetical protein phrog_4266 unknown function unknown function -1 18503 18901
YP_009288212.1 NC_031082_p28 hypothetical protein phrog_6279 unknown function unknown function -1 16106 16201
YP_009288311.1 NC_031082_p127 hypothetical protein phrog_3500 unknown function unknown function 1 83231 83746
YP_009288252.1 NC_031082_p68 baseplate assembly protein phrog_11 baseplate spike tail 1 45492 46115
YP_009288243.1 NC_031082_p59 hypothetical protein phrog_4082 unknown function unknown function 1 38036 38635
YP_009288289.1 NC_031082_p105 exodeoxyribonuclease phrog_107 exonuclease DNA, RNA and nucleotide metabolism 1 70308 71348
YP_009288238.1 NC_031082_p54 structural protein phrog_4146 tail protease other 1 35190 35567
YP_009288290.1 NC_031082_p106 NAD synthetase phrog_447 NAD synthetase other 1 71338 71835
YP_009288236.1 NC_031082_p52 hypothetical protein phrog_240 head protein head and packaging 1 33488 33820
YP_009288227.1 NC_031082_p43 hypothetical protein phrog_850 RNA-binding protein DNA, RNA and nucleotide metabolism 1 22627 24042
YP_009288305.1 NC_031082_p121 hypothetical protein phrog_4382 unknown function unknown function 1 81106 81501
YP_009288309.1 NC_031082_p125 hypothetical protein phrog_4425 unknown function unknown function 1 82599 82856
YP_009288301.1 NC_031082_p117 HNH homing endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism 1 78934 79398
YP_009288294.1 NC_031082_p110 hypothetical protein phrog_3358 unknown function unknown function 1 73133 73468
YP_009288281.1 NC_031082_p97 hypothetical protein phrog_4039 unknown function unknown function 1 64697 65119
YP_009288285.1 NC_031082_p101 DNA primase/helicase phrog_239 DNA primase/helicase DNA, RNA and nucleotide metabolism 1 66928 68913
YP_009288276.1 NC_031082_p92 hypothetical protein phrog_2381 unknown function unknown function -1 60598 60744
YP_009288229.1 NC_031082_p45 HNH homing endonuclease phrog_2255 HNH endonuclease DNA, RNA and nucleotide metabolism 1 25943 26290
YP_009288222.1 NC_031082_p38 hypothetical protein phrog_4463 unknown function unknown function -1 20547 20918
YP_009288255.1 NC_031082_p71 hypothetical protein phrog_4017 baseplate protein tail 1 48006 48863
YP_009288200.1 NC_031082_p16 hypothetical protein phrog_3436 unknown function unknown function 1 9233 9505