| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_031082 |
Definition |
Escherichia phage vB_EcoM_Alf5, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Ounavirinae; Felixounavirus; Escherichia virus Alf5. |
DB of origin |
REFSEQ |
Length |
87662 |
Host Name |
Escherichia coli |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
133 |
%GC |
39.01 |
Number of singletons |
0 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009288297.1 | NC_031082_p113 | ribonucleoside triphosphate reductase beta subunit | phrog_86 | ribonucleoside diphosphate reductase small subunit | DNA, RNA and nucleotide metabolism | 1 | 76059 | 77132 |
| YP_009288299.1 | NC_031082_p115 | hypothetical protein | phrog_4532 | unknown function | unknown function | 1 | 77367 | 77573 |
| YP_009288304.1 | NC_031082_p120 | hypothetical protein | phrog_11929 | membrane protein | moron, auxiliary metabolic gene and host takeover | 1 | 80909 | 81109 |
| YP_009288205.1 | NC_031082_p21 | hypothetical protein | phrog_4318 | unknown function | unknown function | 1 | 11327 | 11668 |
| YP_009288196.1 | NC_031082_p12 | phosphatase | phrog_335 | phosphatase | other | 1 | 6926 | 7711 |
| YP_009288239.1 | NC_031082_p55 | major capsid protein | phrog_29 | major head protein | head and packaging | 1 | 35601 | 36710 |
| YP_009288254.1 | NC_031082_p70 | baseplate component | phrog_6 | baseplate wedge subunit | tail | 1 | 46534 | 48003 |
| YP_009288197.1 | NC_031082_p13 | hypothetical protein | phrog_5293 | unknown function | unknown function | 1 | 8226 | 8432 |
| YP_009288189.1 | NC_031082_p5 | hypothetical protein | phrog_2267 | unknown function | unknown function | 1 | 4889 | 5353 |
| YP_009288214.1 | NC_031082_p30 | hypothetical protein | phrog_4459 | unknown function | unknown function | -1 | 16683 | 16901 |
| YP_009288187.1 | NC_031082_p3 | hypothetical protein | phrog_600 | unknown function | unknown function | 1 | 3657 | 4205 |
| YP_009288260.1 | NC_031082_p76 | hypothetical protein | phrog_4038 | unknown function | unknown function | 1 | 52971 | 53342 |
| YP_009288274.1 | NC_031082_p90 | hypothetical protein | phrog_4427 | unknown function | unknown function | -1 | 60134 | 60340 |
| YP_009288261.1 | NC_031082_p77 | thymidylate synthase | phrog_160 | thymidylate synthase | DNA, RNA and nucleotide metabolism | -1 | 53387 | 54286 |
| YP_009288257.1 | NC_031082_p73 | tail fiber protein | phrog_2097 | tail fiber protein | tail | 1 | 49168 | 50316 |
| YP_009288217.1 | NC_031082_p33 | hypothetical protein | phrog_4385 | unknown function | unknown function | -1 | 17903 | 18115 |
| YP_009288282.1 | NC_031082_p98 | hypothetical protein | phrog_4251 | minor tail protein | tail | 1 | 65121 | 65921 |
| YP_009288230.1 | NC_031082_p46 | hypothetical protein | phrog_2143 | unknown function | unknown function | 1 | 27542 | 28099 |
| YP_009288242.1 | NC_031082_p58 | hypothetical protein | phrog_2874 | unknown function | unknown function | 1 | 37660 | 38061 |
| YP_009288295.1 | NC_031082_p111 | ribonucleoside triphosphate reductase alpha subunit | phrog_84 | ribonucleoside-diphosphate reductase large subunit | DNA, RNA and nucleotide metabolism | 1 | 73515 | 75749 |
| YP_009288306.1 | NC_031082_p122 | hypothetical protein | phrog_1774 | unknown function | unknown function | 1 | 81498 | 81797 |
| YP_009288225.1 | NC_031082_p41 | hypothetical protein | phrog_8138 | unknown function | unknown function | -1 | 21765 | 21947 |
| YP_009288207.1 | NC_031082_p23 | hypothetical protein | phrog_4559 | unknown function | unknown function | 1 | 12490 | 12738 |
| YP_009288220.1 | NC_031082_p36 | lysin | phrog_7 | endolysin | lysis | -1 | 18953 | 19417 |
| YP_009288246.1 | NC_031082_p62 | hypothetical protein | phrog_1613 | tail assembly chaperone | tail | 1 | 40524 | 40922 |
| YP_009288249.1 | NC_031082_p65 | hypothetical protein | phrog_3721 | unknown function | unknown function | 1 | 43377 | 44174 |
| YP_009288226.1 | NC_031082_p42 | hypothetical protein | phrog_4114 | unknown function | unknown function | 1 | 22176 | 22547 |
| YP_009288284.1 | NC_031082_p100 | hypothetical protein | phrog_4469 | unknown function | unknown function | 1 | 66741 | 66935 |
| YP_009288235.1 | NC_031082_p51 | hypothetical protein | phrog_3977 | unknown function | unknown function | 1 | 32988 | 33488 |
| YP_009288203.1 | NC_031082_p19 | hypothetical protein | phrog_3303 | unknown function | unknown function | 1 | 10394 | 10936 |
| YP_009288253.1 | NC_031082_p69 | hypothetical protein | phrog_120 | baseplate wedge subunit | tail | 1 | 46115 | 46534 |
| YP_009288202.1 | NC_031082_p18 | hypothetical protein | phrog_3623 | unknown function | unknown function | 1 | 10105 | 10308 |
| YP_009288310.1 | NC_031082_p126 | hypothetical protein | phrog_4462 | unknown function | unknown function | 1 | 82859 | 83179 |
| YP_009288275.1 | NC_031082_p91 | hypothetical protein | phrog_902 | unknown function | unknown function | -1 | 60351 | 60608 |
| YP_009288245.1 | NC_031082_p61 | hypothetical protein | phrog_280 | virion structural protein | head and packaging | 1 | 40004 | 40450 |
| YP_009288218.1 | NC_031082_p34 | hypothetical protein | phrog_4348 | unknown function | unknown function | -1 | 18115 | 18510 |
| YP_009288268.1 | NC_031082_p84 | hypothetical protein | phrog_4332 | unknown function | unknown function | -1 | 56487 | 56870 |
| YP_009288221.1 | NC_031082_p37 | tail protein | phrog_3995 | tail protein | tail | -1 | 19417 | 20550 |
| YP_009288248.1 | NC_031082_p64 | tail length tape-measure protein | phrog_4036 | tail length tape measure protein | tail | 1 | 41164 | 43377 |
| YP_009288240.1 | NC_031082_p56 | hypothetical protein | phrog_1732 | unknown function | unknown function | 1 | 36732 | 37181 |
| YP_009288263.1 | NC_031082_p79 | hypothetical protein | phrog_2993 | unknown function | unknown function | -1 | 54830 | 55090 |
| YP_009288259.1 | NC_031082_p75 | hypothetical protein | phrog_402 | unknown function | unknown function | 1 | 52776 | 52970 |
| YP_009288237.1 | NC_031082_p53 | head maturation protease | phrog_53 | head maturation protease | head and packaging | 1 | 33832 | 35178 |
| YP_009288270.1 | NC_031082_p86 | hypothetical protein | phrog_4652 | unknown function | unknown function | -1 | 57710 | 58297 |
| YP_009288265.1 | NC_031082_p81 | hypothetical protein | phrog_4116 | unknown function | unknown function | -1 | 55620 | 55979 |
| YP_009288232.1 | NC_031082_p48 | hypothetical protein | phrog_4397 | unknown function | unknown function | 1 | 29682 | 29882 |
| YP_009288241.1 | NC_031082_p57 | hypothetical protein | phrog_222 | tail completion or Neck1 protein | connector | 1 | 37181 | 37663 |
| YP_009288266.1 | NC_031082_p82 | transcriptional regulatory protein | phrog_1373 | transcriptional regulator | transcription regulation | -1 | 55981 | 56280 |
| YP_009288264.1 | NC_031082_p80 | hypothetical protein | phrog_4422 | unknown function | unknown function | -1 | 55091 | 55606 |
| YP_009288208.1 | NC_031082_p24 | hypothetical protein | phrog_4330 | unknown function | unknown function | -1 | 14390 | 15013 |
| YP_009288271.1 | NC_031082_p87 | hypothetical protein | phrog_22006 | unknown function | unknown function | -1 | 58694 | 58840 |
| YP_009288213.1 | NC_031082_p29 | hypothetical protein | phrog_4343 | unknown function | unknown function | -1 | 16183 | 16686 |
| YP_009288308.1 | NC_031082_p124 | hypothetical protein | phrog_5082 | unknown function | unknown function | 1 | 82255 | 82632 |
| YP_009288193.1 | NC_031082_p9 | hypothetical protein | phrog_4453 | unknown function | unknown function | 1 | 6185 | 6508 |
| YP_009288313.1 | NC_031082_p129 | ribose-phosphate pyrophosphokinase | phrog_619 | ribose-phosphate pyrophosphokinase | other | 1 | 84029 | 84910 |
| YP_009288210.1 | NC_031082_p26 | hypothetical protein | phrog_7193 | unknown function | unknown function | -1 | 15406 | 15828 |
| YP_009288277.1 | NC_031082_p93 | hypothetical protein | phrog_4230 | unknown function | unknown function | -1 | 60741 | 60959 |
| YP_009288286.1 | NC_031082_p102 | hypothetical protein | phrog_4982 | unknown function | unknown function | 1 | 68888 | 69169 |
| YP_009288233.1 | NC_031082_p49 | terminase large subunit | phrog_979 | terminase large subunit | head and packaging | 1 | 29904 | 31505 |
| YP_009288287.1 | NC_031082_p103 | hypothetical protein | phrog_4424 | unknown function | unknown function | 1 | 69166 | 69315 |
| YP_009288278.1 | NC_031082_p94 | hypothetical protein | phrog_5180 | unknown function | unknown function | -1 | 60956 | 61165 |
| YP_009288262.1 | NC_031082_p78 | dihydrofolate reductase | phrog_316 | dihydrofolate reductase | DNA, RNA and nucleotide metabolism | -1 | 54288 | 54833 |
| YP_009288303.1 | NC_031082_p119 | hypothetical protein | phrog_8826 | unknown function | unknown function | 1 | 80571 | 80906 |
| YP_009288247.1 | NC_031082_p63 | hypothetical protein | phrog_4963 | tail assembly chaperone | tail | 1 | 40925 | 41164 |
| YP_009288201.1 | NC_031082_p17 | hypothetical protein | phrog_4327 | unknown function | unknown function | 1 | 9593 | 9997 |
| YP_009288267.1 | NC_031082_p83 | hypothetical protein | phrog_4473 | unknown function | unknown function | -1 | 56273 | 56485 |
| YP_009288292.1 | NC_031082_p108 | hypothetical protein | phrog_2144 | MazG-like pyrophosphatase | other | 1 | 72081 | 72836 |
| YP_009288316.1 | NC_031082_p132 | hypothetical protein | phrog_4262 | unknown function | unknown function | 1 | 87141 | 87476 |
| YP_009288188.1 | NC_031082_p4 | PsET polynucleotide 5'-kinase/3'-phosphatase | phrog_3970 | polynucleotide kinase | other | 1 | 4183 | 4878 |
| YP_009288206.1 | NC_031082_p22 | hypothetical protein | phrog_4725 | unknown function | unknown function | 1 | 11890 | 12420 |
| YP_009288283.1 | NC_031082_p99 | deoxynucleotide monophosphate kinase | phrog_139 | deoxynucleoside monophosphate kinase | other | 1 | 65983 | 66726 |
| YP_009288191.1 | NC_031082_p7 | hypothetical protein | phrog_4180 | unknown function | unknown function | 1 | 5647 | 5916 |
| YP_009288291.1 | NC_031082_p107 | hypothetical protein | phrog_4442 | unknown function | unknown function | 1 | 71857 | 72105 |
| YP_009288315.1 | NC_031082_p131 | hypothetical protein | phrog_20372 | unknown function | unknown function | 1 | 86791 | 87135 |
| YP_009288312.1 | NC_031082_p128 | hypothetical protein | phrog_4726 | unknown function | unknown function | 1 | 83739 | 84017 |
| YP_009288211.1 | NC_031082_p27 | hypothetical protein | phrog_4457 | unknown function | unknown function | -1 | 15882 | 16106 |
| YP_009288231.1 | NC_031082_p47 | hypothetical protein | phrog_2114 | unknown function | unknown function | 1 | 28551 | 29285 |
| YP_009288198.1 | NC_031082_p14 | hypothetical protein | phrog_4401 | unknown function | unknown function | 1 | 8520 | 8816 |
| YP_009288298.1 | NC_031082_p114 | glutaredoxin | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | 1 | 77132 | 77374 |
| YP_009288279.1 | NC_031082_p95 | HNH homing endonuclease | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 61217 | 61768 |
| YP_009288273.1 | NC_031082_p89 | hypothetical protein | phrog_5768 | unknown function | unknown function | -1 | 59946 | 60137 |
| YP_009288258.1 | NC_031082_p74 | tail fiber protein | phrog_4277 | tail fiber protein | tail | 1 | 50363 | 52696 |
| YP_009288272.1 | NC_031082_p88 | DNA ligase | phrog_114 | ATP-dependent DNA ligase | DNA, RNA and nucleotide metabolism | -1 | 58844 | 59944 |
| YP_009288215.1 | NC_031082_p31 | hypothetical protein | phrog_4109 | unknown function | unknown function | -1 | 16985 | 17566 |
| YP_009288269.1 | NC_031082_p85 | hypothetical protein | phrog_5926 | unknown function | unknown function | -1 | 57267 | 57707 |
| YP_009288307.1 | NC_031082_p123 | anaerobic nucleoside-triphosphate reductase small subunit | phrog_626 | anaerobic ribonucleotide reductase small subunit | DNA, RNA and nucleotide metabolism | 1 | 81807 | 82292 |
| YP_009288185.1 | NC_031082_p1 | rIIA | phrog_612 | RIIA lysis inhibitor | lysis | 1 | 1 | 2367 |
| YP_009288314.1 | NC_031082_p130 | nicotinamide phosphoribosyltransferase | phrog_448 | nicotinamide phosphoribosyl transferase | other | 1 | 84956 | 86737 |
| YP_009288216.1 | NC_031082_p32 | hypothetical protein | phrog_4040 | unknown function | unknown function | -1 | 17566 | 17910 |
| YP_009288199.1 | NC_031082_p15 | hypothetical protein | phrog_4375 | unknown function | unknown function | 1 | 8810 | 9142 |
| YP_009288209.1 | NC_031082_p25 | hypothetical protein | phrog_4713 | unknown function | unknown function | -1 | 14952 | 15416 |
| YP_009288190.1 | NC_031082_p6 | hypothetical protein | phrog_1152 | Rz-like spanin | lysis | 1 | 5406 | 5753 |
| YP_009288302.1 | NC_031082_p118 | anaerobic ribonucleoside-triphosphate reductase | phrog_4218 | anaerobic ribonucleoside reductase large subunit | DNA, RNA and nucleotide metabolism | 1 | 79642 | 80508 |
| YP_009288234.1 | NC_031082_p50 | structural protein | phrog_113 | portal protein | head and packaging | 1 | 31522 | 32988 |
| YP_009288288.1 | NC_031082_p104 | hypothetical protein | phrog_3877 | unknown function | unknown function | 1 | 69388 | 70245 |
| YP_009288244.1 | NC_031082_p60 | structural protein | phrog_205 | tail sheath | tail | 1 | 38636 | 39988 |
| YP_009288293.1 | NC_031082_p109 | hypothetical protein | phrog_4007 | unknown function | unknown function | 1 | 72817 | 73140 |
| YP_009288280.1 | NC_031082_p96 | DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 61740 | 64439 |
| YP_009288228.1 | NC_031082_p44 | hypothetical protein | phrog_14433 | unknown function | unknown function | -1 | 24989 | 25312 |
| YP_009288224.1 | NC_031082_p40 | hypothetical protein | phrog_5064 | unknown function | unknown function | -1 | 21550 | 21783 |
| YP_009288195.1 | NC_031082_p11 | hypothetical protein | phrog_2210 | unknown function | unknown function | 1 | 6725 | 6925 |
| YP_009288223.1 | NC_031082_p39 | hypothetical protein | phrog_4034 | unknown function | unknown function | -1 | 20966 | 21556 |
| YP_009288256.1 | NC_031082_p72 | hypothetical protein | phrog_4141 | unknown function | unknown function | 1 | 48863 | 49165 |
| YP_009288204.1 | NC_031082_p20 | hypothetical protein | phrog_4640 | unknown function | unknown function | 1 | 11002 | 11235 |
| YP_009288251.1 | NC_031082_p67 | hypothetical protein | phrog_196 | baseplate hub | tail | 1 | 44515 | 45492 |
| YP_009288186.1 | NC_031082_p2 | rIIB | phrog_609 | RIIB lysis inhibitor | lysis | 1 | 2447 | 3556 |
| YP_009288192.1 | NC_031082_p8 | hypothetical protein | phrog_4391 | unknown function | unknown function | 1 | 5913 | 6182 |
| YP_009288300.1 | NC_031082_p116 | anaerobic ribonucleoside-triphosphate reductase | phrog_487 | NrdD-like anaerobic ribonucleotide reductase large subunit | moron, auxiliary metabolic gene and host takeover | 1 | 77622 | 78821 |
| YP_009288194.1 | NC_031082_p10 | hypothetical protein | phrog_13034 | unknown function | unknown function | 1 | 6486 | 6713 |
| YP_009288296.1 | NC_031082_p112 | hypothetical protein | phrog_2652 | unknown function | unknown function | 1 | 75805 | 76062 |
| YP_009288317.1 | NC_031082_p133 | hypothetical protein | phrog_3931 | unknown function | unknown function | 1 | 87458 | 87634 |
| YP_009288250.1 | NC_031082_p66 | hypothetical protein | phrog_349 | virion structural protein | head and packaging | 1 | 44174 | 44515 |
| YP_009288219.1 | NC_031082_p35 | hypothetical protein | phrog_4266 | unknown function | unknown function | -1 | 18503 | 18901 |
| YP_009288212.1 | NC_031082_p28 | hypothetical protein | phrog_6279 | unknown function | unknown function | -1 | 16106 | 16201 |
| YP_009288311.1 | NC_031082_p127 | hypothetical protein | phrog_3500 | unknown function | unknown function | 1 | 83231 | 83746 |
| YP_009288252.1 | NC_031082_p68 | baseplate assembly protein | phrog_11 | baseplate spike | tail | 1 | 45492 | 46115 |
| YP_009288243.1 | NC_031082_p59 | hypothetical protein | phrog_4082 | unknown function | unknown function | 1 | 38036 | 38635 |
| YP_009288289.1 | NC_031082_p105 | exodeoxyribonuclease | phrog_107 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 70308 | 71348 |
| YP_009288238.1 | NC_031082_p54 | structural protein | phrog_4146 | tail protease | other | 1 | 35190 | 35567 |
| YP_009288290.1 | NC_031082_p106 | NAD synthetase | phrog_447 | NAD synthetase | other | 1 | 71338 | 71835 |
| YP_009288236.1 | NC_031082_p52 | hypothetical protein | phrog_240 | head protein | head and packaging | 1 | 33488 | 33820 |
| YP_009288227.1 | NC_031082_p43 | hypothetical protein | phrog_850 | RNA-binding protein | DNA, RNA and nucleotide metabolism | 1 | 22627 | 24042 |
| YP_009288305.1 | NC_031082_p121 | hypothetical protein | phrog_4382 | unknown function | unknown function | 1 | 81106 | 81501 |
| YP_009288309.1 | NC_031082_p125 | hypothetical protein | phrog_4425 | unknown function | unknown function | 1 | 82599 | 82856 |
| YP_009288301.1 | NC_031082_p117 | HNH homing endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 78934 | 79398 |
| YP_009288294.1 | NC_031082_p110 | hypothetical protein | phrog_3358 | unknown function | unknown function | 1 | 73133 | 73468 |
| YP_009288281.1 | NC_031082_p97 | hypothetical protein | phrog_4039 | unknown function | unknown function | 1 | 64697 | 65119 |
| YP_009288285.1 | NC_031082_p101 | DNA primase/helicase | phrog_239 | DNA primase/helicase | DNA, RNA and nucleotide metabolism | 1 | 66928 | 68913 |
| YP_009288276.1 | NC_031082_p92 | hypothetical protein | phrog_2381 | unknown function | unknown function | -1 | 60598 | 60744 |
| YP_009288229.1 | NC_031082_p45 | HNH homing endonuclease | phrog_2255 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 25943 | 26290 |
| YP_009288222.1 | NC_031082_p38 | hypothetical protein | phrog_4463 | unknown function | unknown function | -1 | 20547 | 20918 |
| YP_009288255.1 | NC_031082_p71 | hypothetical protein | phrog_4017 | baseplate protein | tail | 1 | 48006 | 48863 |
| YP_009288200.1 | NC_031082_p16 | hypothetical protein | phrog_3436 | unknown function | unknown function | 1 | 9233 | 9505 |