Genomic map of Citrobacter phage SH2 (NC_031092)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_031092
Definition
Citrobacter phage SH2, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Studiervirinae; Teetrevirus; Citrobacter virus SH2.
DB of origin
REFSEQ
Length
39158
Host Name
Citrobacter freundii
Host domain
Bacteria
Is prophage?
undef
Number of proteins
53
%GC
50.72
Number of singletons
0
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009289322.1 NC_031092_p28 hypothetical protein phrog_1334 unknown function unknown function 1 16553 16762
YP_009289346.1 NC_031092_p52 hypothetical protein phrog_8173 unknown function unknown function 1 37687 37815
YP_009289328.1 NC_031092_p34 host specificity protein B phrog_1320 host range and adsorption protein moron, auxiliary metabolic gene and host takeover 1 18568 18888
YP_009289316.1 NC_031092_p22 hypothetical protein phrog_5140 unknown function unknown function 1 12748 13077
YP_009289326.1 NC_031092_p32 hypothetical protein phrog_1447 unknown function unknown function 1 18039 18284
YP_009289297.1 NC_031092_p3 hypothetical protein phrog_25811 unknown function unknown function 1 1699 1857
YP_009289337.1 NC_031092_p43 internal virion protein C phrog_1339 internal virion protein head and packaging 1 27218 29461
YP_009289321.1 NC_031092_p27 HNS binding protein phrog_1452 Gp5.5-like host HNS inhibition moron, auxiliary metabolic gene and host takeover 1 16135 16437
YP_009289318.1 NC_031092_p24 hypothetical protein phrog_2254 unknown function unknown function 1 13349 13633
YP_009289311.1 NC_031092_p17 N-acetylmuramoyl-l-alanine amidase phrog_822 amidase lysis 1 10694 11149
YP_009289303.1 NC_031092_p9 deoxyguanosine triphospho-hydrolase inhibitor phrog_2949 dGTPase inhibitor; target for F exclusion other 1 6736 7008
YP_009289323.1 NC_031092_p29 hypothetical protein phrog_4790 host RecBCD nuclease inhibitor moron, auxiliary metabolic gene and host takeover 1 16705 16941
YP_009289332.1 NC_031092_p38 minor capsid protein phrog_215 structural protein with Ig domain head and packaging 1 22779 23012
YP_009289312.1 NC_031092_p18 hypothetical protein phrog_17413 unknown function unknown function 1 11154 11261
YP_009289299.1 NC_031092_p5 protein kinase phrog_2828 serine-threonine kinase other 1 2073 3182
YP_009289315.1 NC_031092_p21 primase/helicase phrog_239 DNA primase/helicase DNA, RNA and nucleotide metabolism 1 11514 13028
YP_009289301.1 NC_031092_p7 hypothetical protein phrog_6440 unknown function unknown function 1 6008 6502
YP_009289343.1 NC_031092_p49 hypothetical protein phrog_4306 Rz-like spanin lysis 1 36189 36443
YP_009289327.1 NC_031092_p33 head protein phrog_1391 unknown function unknown function 1 18289 18540
YP_009289338.1 NC_031092_p44 internal virion protein D phrog_342 internal virion protein with endolysin domain head and packaging 1 29484 33452
YP_009289344.1 NC_031092_p50 DNA packaging protein B phrog_38 terminase large subunit head and packaging 1 36501 38264
YP_009289340.1 NC_031092_p46 lysis protein phrog_920 holin lysis 1 35511 35714
YP_009289300.1 NC_031092_p6 RNA polymerase phrog_414 RNA polymerase DNA, RNA and nucleotide metabolism 1 3253 5907
YP_009289334.1 NC_031092_p40 tail tubular protein B phrog_457 tail protein tail 1 23731 26136
YP_009289339.1 NC_031092_p45 tail fiber protein phrog_6256 tail fiber protein tail 1 33524 35500
YP_009289329.1 NC_031092_p35 head-to-tail joining protein phrog_449 head-tail adaptor connector 1 18899 20506
YP_009289314.1 NC_031092_p20 hypothetical protein phrog_23725 unknown function unknown function 1 11362 11517
YP_009289341.1 NC_031092_p47 DNA packaging protein A phrog_1351 terminase small subunit head and packaging 1 35718 35984
YP_009289345.1 NC_031092_p51 hypothetical protein phrog_8982 unknown function unknown function 1 37213 37383
YP_009289310.1 NC_031092_p16 endonuclease phrog_945 endonuclease DNA, RNA and nucleotide metabolism 1 10240 10701
YP_009289296.1 NC_031092_p2 hypothetical protein phrog_6500 unknown function unknown function 1 1479 1679
YP_009289336.1 NC_031092_p42 internal virion protein B phrog_805 internal virion protein head and packaging 1 26622 27215
YP_009289308.1 NC_031092_p14 bacterial RNA polymerase inhibitor phrog_1307 RNA polymerase inhibitor DNA, RNA and nucleotide metabolism 1 9253 9489
YP_009289307.1 NC_031092_p13 hypothetical protein phrog_1312 unknown function unknown function 1 9119 9256
YP_009289342.1 NC_031092_p48 endopeptidase Rz phrog_1327 Rz-like spanin lysis 1 36062 36526
YP_009289320.1 NC_031092_p26 homing endonuclease phrog_1872 endonuclease DNA, RNA and nucleotide metabolism 1 15825 16157
YP_009289298.1 NC_031092_p4 hypothetical protein phrog_2385 unknown function unknown function 1 1854 2051
YP_009289347.1 NC_031092_p53 hypothetical protein phrog_2193 unknown function unknown function 1 38509 38658
YP_009289302.1 NC_031092_p8 hypothetical protein phrog_2490 unknown function unknown function 1 6593 6733
YP_009289305.1 NC_031092_p11 LysR family transcriptional regulator phrog_1777 unknown function unknown function 1 8291 8548
YP_009289317.1 NC_031092_p23 hypothetical protein phrog_1950 unknown function unknown function 1 13124 13336
YP_009289325.1 NC_031092_p31 hypothetical protein phrog_5008 unknown function unknown function 1 17831 17944
YP_009289330.1 NC_031092_p36 capsid assembly protein phrog_1052 head assembly head and packaging 1 20608 21540
YP_009289295.1 NC_031092_p1 S-adenosyl-l-methionine hydrolase phrog_2226 SAM-dependent methyltransferase other 1 948 1406
YP_009289309.1 NC_031092_p15 single stranded dna-binding protein phrog_112 Gp2.5-like ssDNA binding protein and ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 9542 10240
YP_009289331.1 NC_031092_p37 capsid protein phrog_267 major head protein head and packaging 1 21697 22740
YP_009289319.1 NC_031092_p25 DNA polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 13701 15815
YP_009289324.1 NC_031092_p30 exonuclease phrog_107 exonuclease DNA, RNA and nucleotide metabolism 1 16938 17849
YP_009289313.1 NC_031092_p19 primase/helicase phrog_239 DNA primase/helicase DNA, RNA and nucleotide metabolism 1 11328 13028
YP_009289304.1 NC_031092_p10 DNA ligase phrog_114 ATP-dependent DNA ligase DNA, RNA and nucleotide metabolism 1 7103 8119
YP_009289306.1 NC_031092_p12 nucleotide kinase phrog_4943 unknown function unknown function 1 8548 9132
YP_009289333.1 NC_031092_p39 tail tubular protein A phrog_446 tail protein tail 1 23125 23715
YP_009289335.1 NC_031092_p41 internal virion protein A phrog_308 internal virion protein head and packaging 1 26209 26619