| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_031092 |
Definition |
Citrobacter phage SH2, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Studiervirinae; Teetrevirus; Citrobacter virus SH2. |
DB of origin |
REFSEQ |
Length |
39158 |
Host Name |
Citrobacter freundii |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
53 |
%GC |
50.72 |
Number of singletons |
0 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009289322.1 | NC_031092_p28 | hypothetical protein | phrog_1334 | unknown function | unknown function | 1 | 16553 | 16762 |
| YP_009289346.1 | NC_031092_p52 | hypothetical protein | phrog_8173 | unknown function | unknown function | 1 | 37687 | 37815 |
| YP_009289328.1 | NC_031092_p34 | host specificity protein B | phrog_1320 | host range and adsorption protein | moron, auxiliary metabolic gene and host takeover | 1 | 18568 | 18888 |
| YP_009289316.1 | NC_031092_p22 | hypothetical protein | phrog_5140 | unknown function | unknown function | 1 | 12748 | 13077 |
| YP_009289326.1 | NC_031092_p32 | hypothetical protein | phrog_1447 | unknown function | unknown function | 1 | 18039 | 18284 |
| YP_009289297.1 | NC_031092_p3 | hypothetical protein | phrog_25811 | unknown function | unknown function | 1 | 1699 | 1857 |
| YP_009289337.1 | NC_031092_p43 | internal virion protein C | phrog_1339 | internal virion protein | head and packaging | 1 | 27218 | 29461 |
| YP_009289321.1 | NC_031092_p27 | HNS binding protein | phrog_1452 | Gp5.5-like host HNS inhibition | moron, auxiliary metabolic gene and host takeover | 1 | 16135 | 16437 |
| YP_009289318.1 | NC_031092_p24 | hypothetical protein | phrog_2254 | unknown function | unknown function | 1 | 13349 | 13633 |
| YP_009289311.1 | NC_031092_p17 | N-acetylmuramoyl-l-alanine amidase | phrog_822 | amidase | lysis | 1 | 10694 | 11149 |
| YP_009289303.1 | NC_031092_p9 | deoxyguanosine triphospho-hydrolase inhibitor | phrog_2949 | dGTPase inhibitor; target for F exclusion | other | 1 | 6736 | 7008 |
| YP_009289323.1 | NC_031092_p29 | hypothetical protein | phrog_4790 | host RecBCD nuclease inhibitor | moron, auxiliary metabolic gene and host takeover | 1 | 16705 | 16941 |
| YP_009289332.1 | NC_031092_p38 | minor capsid protein | phrog_215 | structural protein with Ig domain | head and packaging | 1 | 22779 | 23012 |
| YP_009289312.1 | NC_031092_p18 | hypothetical protein | phrog_17413 | unknown function | unknown function | 1 | 11154 | 11261 |
| YP_009289299.1 | NC_031092_p5 | protein kinase | phrog_2828 | serine-threonine kinase | other | 1 | 2073 | 3182 |
| YP_009289315.1 | NC_031092_p21 | primase/helicase | phrog_239 | DNA primase/helicase | DNA, RNA and nucleotide metabolism | 1 | 11514 | 13028 |
| YP_009289301.1 | NC_031092_p7 | hypothetical protein | phrog_6440 | unknown function | unknown function | 1 | 6008 | 6502 |
| YP_009289343.1 | NC_031092_p49 | hypothetical protein | phrog_4306 | Rz-like spanin | lysis | 1 | 36189 | 36443 |
| YP_009289327.1 | NC_031092_p33 | head protein | phrog_1391 | unknown function | unknown function | 1 | 18289 | 18540 |
| YP_009289338.1 | NC_031092_p44 | internal virion protein D | phrog_342 | internal virion protein with endolysin domain | head and packaging | 1 | 29484 | 33452 |
| YP_009289344.1 | NC_031092_p50 | DNA packaging protein B | phrog_38 | terminase large subunit | head and packaging | 1 | 36501 | 38264 |
| YP_009289340.1 | NC_031092_p46 | lysis protein | phrog_920 | holin | lysis | 1 | 35511 | 35714 |
| YP_009289300.1 | NC_031092_p6 | RNA polymerase | phrog_414 | RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 3253 | 5907 |
| YP_009289334.1 | NC_031092_p40 | tail tubular protein B | phrog_457 | tail protein | tail | 1 | 23731 | 26136 |
| YP_009289339.1 | NC_031092_p45 | tail fiber protein | phrog_6256 | tail fiber protein | tail | 1 | 33524 | 35500 |
| YP_009289329.1 | NC_031092_p35 | head-to-tail joining protein | phrog_449 | head-tail adaptor | connector | 1 | 18899 | 20506 |
| YP_009289314.1 | NC_031092_p20 | hypothetical protein | phrog_23725 | unknown function | unknown function | 1 | 11362 | 11517 |
| YP_009289341.1 | NC_031092_p47 | DNA packaging protein A | phrog_1351 | terminase small subunit | head and packaging | 1 | 35718 | 35984 |
| YP_009289345.1 | NC_031092_p51 | hypothetical protein | phrog_8982 | unknown function | unknown function | 1 | 37213 | 37383 |
| YP_009289310.1 | NC_031092_p16 | endonuclease | phrog_945 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 10240 | 10701 |
| YP_009289296.1 | NC_031092_p2 | hypothetical protein | phrog_6500 | unknown function | unknown function | 1 | 1479 | 1679 |
| YP_009289336.1 | NC_031092_p42 | internal virion protein B | phrog_805 | internal virion protein | head and packaging | 1 | 26622 | 27215 |
| YP_009289308.1 | NC_031092_p14 | bacterial RNA polymerase inhibitor | phrog_1307 | RNA polymerase inhibitor | DNA, RNA and nucleotide metabolism | 1 | 9253 | 9489 |
| YP_009289307.1 | NC_031092_p13 | hypothetical protein | phrog_1312 | unknown function | unknown function | 1 | 9119 | 9256 |
| YP_009289342.1 | NC_031092_p48 | endopeptidase Rz | phrog_1327 | Rz-like spanin | lysis | 1 | 36062 | 36526 |
| YP_009289320.1 | NC_031092_p26 | homing endonuclease | phrog_1872 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 15825 | 16157 |
| YP_009289298.1 | NC_031092_p4 | hypothetical protein | phrog_2385 | unknown function | unknown function | 1 | 1854 | 2051 |
| YP_009289347.1 | NC_031092_p53 | hypothetical protein | phrog_2193 | unknown function | unknown function | 1 | 38509 | 38658 |
| YP_009289302.1 | NC_031092_p8 | hypothetical protein | phrog_2490 | unknown function | unknown function | 1 | 6593 | 6733 |
| YP_009289305.1 | NC_031092_p11 | LysR family transcriptional regulator | phrog_1777 | unknown function | unknown function | 1 | 8291 | 8548 |
| YP_009289317.1 | NC_031092_p23 | hypothetical protein | phrog_1950 | unknown function | unknown function | 1 | 13124 | 13336 |
| YP_009289325.1 | NC_031092_p31 | hypothetical protein | phrog_5008 | unknown function | unknown function | 1 | 17831 | 17944 |
| YP_009289330.1 | NC_031092_p36 | capsid assembly protein | phrog_1052 | head assembly | head and packaging | 1 | 20608 | 21540 |
| YP_009289295.1 | NC_031092_p1 | S-adenosyl-l-methionine hydrolase | phrog_2226 | SAM-dependent methyltransferase | other | 1 | 948 | 1406 |
| YP_009289309.1 | NC_031092_p15 | single stranded dna-binding protein | phrog_112 | Gp2.5-like ssDNA binding protein and ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 9542 | 10240 |
| YP_009289331.1 | NC_031092_p37 | capsid protein | phrog_267 | major head protein | head and packaging | 1 | 21697 | 22740 |
| YP_009289319.1 | NC_031092_p25 | DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 13701 | 15815 |
| YP_009289324.1 | NC_031092_p30 | exonuclease | phrog_107 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 16938 | 17849 |
| YP_009289313.1 | NC_031092_p19 | primase/helicase | phrog_239 | DNA primase/helicase | DNA, RNA and nucleotide metabolism | 1 | 11328 | 13028 |
| YP_009289304.1 | NC_031092_p10 | DNA ligase | phrog_114 | ATP-dependent DNA ligase | DNA, RNA and nucleotide metabolism | 1 | 7103 | 8119 |
| YP_009289306.1 | NC_031092_p12 | nucleotide kinase | phrog_4943 | unknown function | unknown function | 1 | 8548 | 9132 |
| YP_009289333.1 | NC_031092_p39 | tail tubular protein A | phrog_446 | tail protein | tail | 1 | 23125 | 23715 |
| YP_009289335.1 | NC_031092_p41 | internal virion protein A | phrog_308 | internal virion protein | head and packaging | 1 | 26209 | 26619 |