| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_031096 |
Definition |
Pectobacterium phage PP90, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Corkvirinae; Phimunavirus; Pectobacterium virus PP90. |
DB of origin |
REFSEQ |
Length |
44570 |
Host Name |
Pectobacterium atrosepticum |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
56 |
%GC |
48.88 |
Number of singletons |
4 |
Number of paralogs |
4 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009289626.1 | NC_031096_p22 | HNH homing endonuclease | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 13047 | 13535 |
| YP_009289640.1 | NC_031096_p36 | HNH homing exonuclease | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 21758 | 22186 |
| YP_009289645.1 | NC_031096_p41 | capsid scaffold protein | phrog_1018 | head scaffolding protein | head and packaging | 1 | 24764 | 25633 |
| YP_009289659.1 | NC_031096_p55 | hypothetical protein | phrog_7 | endolysin | lysis | 1 | 41781 | 42386 |
| YP_009289623.1 | NC_031096_p19 | hypothetical protein | phrog_15093 | unknown function | unknown function | 1 | 10034 | 10216 |
| YP_009289642.1 | NC_031096_p38 | head to tail connecting protein | phrog_449 | head-tail adaptor | connector | 1 | 22527 | 23630 |
| YP_009289648.1 | NC_031096_p44 | tubular protein A | phrog_446 | tail protein | tail | 1 | 27173 | 27730 |
| YP_009289612.1 | NC_031096_p8 | hypothetical protein | phrog_13313 | unknown function | unknown function | 1 | 3408 | 5192 |
| YP_009289615.1 | NC_031096_p11 | hypothetical protein | singleton | unknown function | unknown function | 1 | 6570 | 6857 |
| YP_009289636.1 | NC_031096_p32 | DNA-dependent RNA polymerase | phrog_414 | RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 18536 | 20980 |
| YP_009289658.1 | NC_031096_p54 | holin | phrog_20 | holin | lysis | 1 | 41528 | 41797 |
| YP_009289654.1 | NC_031096_p50 | DNA maturase A | phrog_891 | terminase small subunit | head and packaging | 1 | 38829 | 39116 |
| YP_009289611.1 | NC_031096_p7 | hypothetical protein | phrog_6167 | unknown function | unknown function | 1 | 3094 | 3438 |
| YP_009289639.1 | NC_031096_p35 | hypothetical protein | singleton | unknown function | unknown function | 1 | 21646 | 21765 |
| YP_009289646.1 | NC_031096_p42 | HNH homing exonuclease | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 25630 | 26112 |
| YP_009289621.1 | NC_031096_p17 | hypothetical protein | phrog_22533 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 9630 | 9857 |
| YP_009289618.1 | NC_031096_p14 | hypothetical protein | singleton | unknown function | unknown function | 1 | 7766 | 7951 |
| YP_009289638.1 | NC_031096_p34 | hypothetical protein | phrog_5167 | unknown function | unknown function | 1 | 21245 | 21649 |
| YP_009289616.1 | NC_031096_p12 | DNA primase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 6854 | 7666 |
| YP_009289627.1 | NC_031096_p23 | hypothetical protein | phrog_862 | unknown function | unknown function | 1 | 13552 | 14388 |
| YP_009289619.1 | NC_031096_p15 | DNA helicase | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 7951 | 9210 |
| YP_009289651.1 | NC_031096_p47 | internal virion protein B | phrog_2083 | internal virion lysozyme motif | head and packaging | 1 | 30691 | 33405 |
| YP_009289653.1 | NC_031096_p49 | tail fiber protein | phrog_11393 | tail fiber protein | tail | 1 | 37216 | 38820 |
| YP_009289652.1 | NC_031096_p48 | internal virion protein C | phrog_342 | internal virion protein with endolysin domain | head and packaging | 1 | 33415 | 37206 |
| YP_009289635.1 | NC_031096_p31 | hypothetical protein | phrog_16324 | unknown function | unknown function | 1 | 18347 | 18529 |
| YP_009289609.1 | NC_031096_p5 | hypothetical protein | phrog_5136 | unknown function | unknown function | 1 | 2468 | 2644 |
| YP_009289657.1 | NC_031096_p53 | Rz1A protein | phrog_1804 | Rz-like spanin | lysis | 1 | 41149 | 41538 |
| YP_009289631.1 | NC_031096_p27 | DNA endonuclease VII | phrog_423 | endonuclease VII | DNA, RNA and nucleotide metabolism | 1 | 15807 | 16232 |
| YP_009289605.1 | NC_031096_p1 | hypothetical protein | phrog_16905 | unknown function | unknown function | 1 | 1154 | 1351 |
| YP_009289617.1 | NC_031096_p13 | hypothetical protein | phrog_20064 | unknown function | unknown function | 1 | 7636 | 7773 |
| YP_009289656.1 | NC_031096_p52 | hypothetical protein | phrog_17528 | unknown function | unknown function | 1 | 40951 | 41139 |
| YP_009289633.1 | NC_031096_p29 | polynucleotide 5' kinase/3' phosphatase | phrog_415 | polynucleotide kinase | other | 1 | 17451 | 17933 |
| YP_009289629.1 | NC_031096_p25 | hypothetical protein | phrog_38674 | unknown function | unknown function | 1 | 15450 | 15572 |
| YP_009289634.1 | NC_031096_p30 | hypothetical protein | phrog_801 | dATP / dGTP pyrophosphohydrolase | DNA, RNA and nucleotide metabolism | 1 | 17930 | 18232 |
| YP_009289655.1 | NC_031096_p51 | DNA maturase B | phrog_38 | terminase large subunit | head and packaging | 1 | 39125 | 40942 |
| YP_009289608.1 | NC_031096_p4 | hypothetical protein | singleton | unknown function | unknown function | 1 | 2320 | 2490 |
| YP_009289624.1 | NC_031096_p20 | HNH homing endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 10257 | 10715 |
| YP_009289643.1 | NC_031096_p39 | HNH homing exonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 23684 | 24169 |
| YP_009289622.1 | NC_031096_p18 | hypothetical protein | phrog_10677 | unknown function | unknown function | 1 | 9832 | 10041 |
| YP_009289650.1 | NC_031096_p46 | internal virion protein A | phrog_4295 | internal virion protein | head and packaging | 1 | 30067 | 30681 |
| YP_009289632.1 | NC_031096_p28 | metallophosphoesterase | phrog_221 | metallo-phosphoesterase | other | 1 | 16412 | 17401 |
| YP_009289613.1 | NC_031096_p9 | aminopeptidase | phrog_4191 | peptidase | other | 1 | 5065 | 6165 |
| YP_009289607.1 | NC_031096_p3 | hypothetical protein | phrog_5277 | unknown function | unknown function | 1 | 1674 | 2243 |
| YP_009289628.1 | NC_031096_p24 | 5' exonuclease | phrog_107 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 14393 | 15448 |
| YP_009289606.1 | NC_031096_p2 | hypothetical protein | phrog_6352 | unknown function | unknown function | 1 | 1348 | 1539 |
| YP_009289637.1 | NC_031096_p33 | hypothetical protein | phrog_5394 | unknown function | unknown function | 1 | 21073 | 21270 |
| YP_009289660.1 | NC_031096_p56 | tail spike protein | phrog_1819 | tail spike protein | tail | 1 | 42401 | 44155 |
| YP_009289620.1 | NC_031096_p16 | hypothetical protein | phrog_10011 | unknown function | unknown function | 1 | 9210 | 9584 |
| YP_009289647.1 | NC_031096_p43 | capsid protein | phrog_267 | major head protein | head and packaging | 1 | 26130 | 27113 |
| YP_009289630.1 | NC_031096_p26 | hypothetical protein | phrog_28780 | unknown function | unknown function | 1 | 15569 | 15814 |
| YP_009289649.1 | NC_031096_p45 | tubular protein B | phrog_457 | tail protein | tail | 1 | 27740 | 30070 |
| YP_009289625.1 | NC_031096_p21 | DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 10703 | 13090 |
| YP_009289614.1 | NC_031096_p10 | hypothetical protein | phrog_4317 | unknown function | unknown function | 1 | 6152 | 6577 |
| YP_009289644.1 | NC_031096_p40 | head to tail connecting protein | phrog_22998 | head-tail connector protein | connector | 1 | 24381 | 24764 |
| YP_009289610.1 | NC_031096_p6 | HNH homing endonuclease | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 2628 | 3113 |
| YP_009289641.1 | NC_031096_p37 | hypothetical protein | phrog_3112 | virion structural protein | head and packaging | 1 | 22234 | 22524 |