Genomic map of Pectobacterium phage PP90 (NC_031096)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_031096
Definition
Pectobacterium phage PP90, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Corkvirinae; Phimunavirus; Pectobacterium virus PP90.
DB of origin
REFSEQ
Length
44570
Host Name
Pectobacterium atrosepticum
Host domain
Bacteria
Is prophage?
undef
Number of proteins
56
%GC
48.88
Number of singletons
4
Number of paralogs
4

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009289626.1 NC_031096_p22 HNH homing endonuclease phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism 1 13047 13535
YP_009289640.1 NC_031096_p36 HNH homing exonuclease phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism 1 21758 22186
YP_009289645.1 NC_031096_p41 capsid scaffold protein phrog_1018 head scaffolding protein head and packaging 1 24764 25633
YP_009289659.1 NC_031096_p55 hypothetical protein phrog_7 endolysin lysis 1 41781 42386
YP_009289623.1 NC_031096_p19 hypothetical protein phrog_15093 unknown function unknown function 1 10034 10216
YP_009289642.1 NC_031096_p38 head to tail connecting protein phrog_449 head-tail adaptor connector 1 22527 23630
YP_009289648.1 NC_031096_p44 tubular protein A phrog_446 tail protein tail 1 27173 27730
YP_009289612.1 NC_031096_p8 hypothetical protein phrog_13313 unknown function unknown function 1 3408 5192
YP_009289615.1 NC_031096_p11 hypothetical protein singleton unknown function unknown function 1 6570 6857
YP_009289636.1 NC_031096_p32 DNA-dependent RNA polymerase phrog_414 RNA polymerase DNA, RNA and nucleotide metabolism 1 18536 20980
YP_009289658.1 NC_031096_p54 holin phrog_20 holin lysis 1 41528 41797
YP_009289654.1 NC_031096_p50 DNA maturase A phrog_891 terminase small subunit head and packaging 1 38829 39116
YP_009289611.1 NC_031096_p7 hypothetical protein phrog_6167 unknown function unknown function 1 3094 3438
YP_009289639.1 NC_031096_p35 hypothetical protein singleton unknown function unknown function 1 21646 21765
YP_009289646.1 NC_031096_p42 HNH homing exonuclease phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism 1 25630 26112
YP_009289621.1 NC_031096_p17 hypothetical protein phrog_22533 endonuclease DNA, RNA and nucleotide metabolism 1 9630 9857
YP_009289618.1 NC_031096_p14 hypothetical protein singleton unknown function unknown function 1 7766 7951
YP_009289638.1 NC_031096_p34 hypothetical protein phrog_5167 unknown function unknown function 1 21245 21649
YP_009289616.1 NC_031096_p12 DNA primase phrog_47 DNA primase DNA, RNA and nucleotide metabolism 1 6854 7666
YP_009289627.1 NC_031096_p23 hypothetical protein phrog_862 unknown function unknown function 1 13552 14388
YP_009289619.1 NC_031096_p15 DNA helicase phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism 1 7951 9210
YP_009289651.1 NC_031096_p47 internal virion protein B phrog_2083 internal virion lysozyme motif head and packaging 1 30691 33405
YP_009289653.1 NC_031096_p49 tail fiber protein phrog_11393 tail fiber protein tail 1 37216 38820
YP_009289652.1 NC_031096_p48 internal virion protein C phrog_342 internal virion protein with endolysin domain head and packaging 1 33415 37206
YP_009289635.1 NC_031096_p31 hypothetical protein phrog_16324 unknown function unknown function 1 18347 18529
YP_009289609.1 NC_031096_p5 hypothetical protein phrog_5136 unknown function unknown function 1 2468 2644
YP_009289657.1 NC_031096_p53 Rz1A protein phrog_1804 Rz-like spanin lysis 1 41149 41538
YP_009289631.1 NC_031096_p27 DNA endonuclease VII phrog_423 endonuclease VII DNA, RNA and nucleotide metabolism 1 15807 16232
YP_009289605.1 NC_031096_p1 hypothetical protein phrog_16905 unknown function unknown function 1 1154 1351
YP_009289617.1 NC_031096_p13 hypothetical protein phrog_20064 unknown function unknown function 1 7636 7773
YP_009289656.1 NC_031096_p52 hypothetical protein phrog_17528 unknown function unknown function 1 40951 41139
YP_009289633.1 NC_031096_p29 polynucleotide 5' kinase/3' phosphatase phrog_415 polynucleotide kinase other 1 17451 17933
YP_009289629.1 NC_031096_p25 hypothetical protein phrog_38674 unknown function unknown function 1 15450 15572
YP_009289634.1 NC_031096_p30 hypothetical protein phrog_801 dATP / dGTP pyrophosphohydrolase DNA, RNA and nucleotide metabolism 1 17930 18232
YP_009289655.1 NC_031096_p51 DNA maturase B phrog_38 terminase large subunit head and packaging 1 39125 40942
YP_009289608.1 NC_031096_p4 hypothetical protein singleton unknown function unknown function 1 2320 2490
YP_009289624.1 NC_031096_p20 HNH homing endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism 1 10257 10715
YP_009289643.1 NC_031096_p39 HNH homing exonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism 1 23684 24169
YP_009289622.1 NC_031096_p18 hypothetical protein phrog_10677 unknown function unknown function 1 9832 10041
YP_009289650.1 NC_031096_p46 internal virion protein A phrog_4295 internal virion protein head and packaging 1 30067 30681
YP_009289632.1 NC_031096_p28 metallophosphoesterase phrog_221 metallo-phosphoesterase other 1 16412 17401
YP_009289613.1 NC_031096_p9 aminopeptidase phrog_4191 peptidase other 1 5065 6165
YP_009289607.1 NC_031096_p3 hypothetical protein phrog_5277 unknown function unknown function 1 1674 2243
YP_009289628.1 NC_031096_p24 5' exonuclease phrog_107 exonuclease DNA, RNA and nucleotide metabolism 1 14393 15448
YP_009289606.1 NC_031096_p2 hypothetical protein phrog_6352 unknown function unknown function 1 1348 1539
YP_009289637.1 NC_031096_p33 hypothetical protein phrog_5394 unknown function unknown function 1 21073 21270
YP_009289660.1 NC_031096_p56 tail spike protein phrog_1819 tail spike protein tail 1 42401 44155
YP_009289620.1 NC_031096_p16 hypothetical protein phrog_10011 unknown function unknown function 1 9210 9584
YP_009289647.1 NC_031096_p43 capsid protein phrog_267 major head protein head and packaging 1 26130 27113
YP_009289630.1 NC_031096_p26 hypothetical protein phrog_28780 unknown function unknown function 1 15569 15814
YP_009289649.1 NC_031096_p45 tubular protein B phrog_457 tail protein tail 1 27740 30070
YP_009289625.1 NC_031096_p21 DNA polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 10703 13090
YP_009289614.1 NC_031096_p10 hypothetical protein phrog_4317 unknown function unknown function 1 6152 6577
YP_009289644.1 NC_031096_p40 head to tail connecting protein phrog_22998 head-tail connector protein connector 1 24381 24764
YP_009289610.1 NC_031096_p6 HNH homing endonuclease phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism 1 2628 3113
YP_009289641.1 NC_031096_p37 hypothetical protein phrog_3112 virion structural protein head and packaging 1 22234 22524