| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_031097 |
Definition |
Gordonia phage Zirinka, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Nymbaxtervirinae; Nymphadoravirus. |
DB of origin |
REFSEQ |
Length |
52077 |
Host Name |
Gordonia terrae |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
79 |
%GC |
66.66 |
Number of singletons |
5 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009289670.1 | NC_031097_p10 | hypothetical protein | phrog_556 | minor head protein | head and packaging | 1 | 7709 | 8038 |
| YP_009289723.1 | NC_031097_p63 | hypothetical protein | phrog_16050 | unknown function | unknown function | 1 | 45085 | 45252 |
| YP_009289661.1 | NC_031097_p1 | terminase small subunit | phrog_83 | terminase small subunit | head and packaging | 1 | 56 | 520 |
| YP_009289677.1 | NC_031097_p17 | tape measure protein | phrog_7025 | tail length tape measure protein | tail | 1 | 10512 | 16952 |
| YP_009289665.1 | NC_031097_p5 | capsid maturation protease | phrog_80 | head maturation protease | head and packaging | 1 | 3785 | 4696 |
| YP_009289683.1 | NC_031097_p23 | membrane protein | phrog_1298 | minor tail protein | tail | 1 | 21439 | 21921 |
| YP_009289711.1 | NC_031097_p51 | hypothetical protein | phrog_6877 | unknown function | unknown function | 1 | 38796 | 39158 |
| YP_009289704.1 | NC_031097_p44 | hypothetical protein | phrog_17511 | unknown function | unknown function | 1 | 35493 | 35921 |
| YP_009289732.1 | NC_031097_p72 | hypothetical protein | singleton | unknown function | unknown function | 1 | 49392 | 49634 |
| YP_009289664.1 | NC_031097_p4 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 2377 | 3795 |
| YP_009289727.1 | NC_031097_p67 | hypothetical protein | phrog_6055 | unknown function | unknown function | 1 | 47483 | 47977 |
| YP_009289738.1 | NC_031097_p78 | hypothetical protein | phrog_10381 | unknown function | unknown function | 1 | 51386 | 51694 |
| YP_009289728.1 | NC_031097_p68 | hypothetical protein | phrog_14741 | unknown function | unknown function | 1 | 47974 | 48228 |
| YP_009289668.1 | NC_031097_p8 | head-to-tail connector protein | phrog_442 | head-tail adaptor | connector | 1 | 6774 | 7319 |
| YP_009289701.1 | NC_031097_p41 | immunity repressor | phrog_6288 | unknown function | unknown function | -1 | 33950 | 34855 |
| YP_009289672.1 | NC_031097_p12 | major tail protein | phrog_3884 | major tail protein | tail | 1 | 8478 | 8990 |
| YP_009289730.1 | NC_031097_p70 | hypothetical protein | phrog_14446 | unknown function | unknown function | 1 | 48587 | 49099 |
| YP_009289710.1 | NC_031097_p50 | hypothetical protein | phrog_210 | unknown function | unknown function | 1 | 37948 | 38799 |
| YP_009289680.1 | NC_031097_p20 | lysin A, L-Ala-D-Glu peptidase domain | phrog_1512 | endolysin | lysis | 1 | 19469 | 20173 |
| YP_009289703.1 | NC_031097_p43 | hypothetical protein | phrog_16839 | unknown function | unknown function | 1 | 35338 | 35496 |
| YP_009289720.1 | NC_031097_p60 | DNA methylase | phrog_116 | DNA methyltransferase | other | 1 | 42783 | 44363 |
| YP_009289667.1 | NC_031097_p7 | head-to-tail connector protein | phrog_9538 | head-tail connector protein | connector | 1 | 6430 | 6777 |
| YP_009289722.1 | NC_031097_p62 | hypothetical protein | singleton | unknown function | unknown function | -1 | 44790 | 45077 |
| YP_009289673.1 | NC_031097_p13 | hypothetical protein | phrog_17334 | unknown function | unknown function | 1 | 9049 | 9222 |
| YP_009289713.1 | NC_031097_p53 | exonuclease | phrog_412 | exonuclease VIII | DNA, RNA and nucleotide metabolism | 1 | 39460 | 40335 |
| YP_009289700.1 | NC_031097_p40 | hypothetical protein | phrog_87 | metallo-protease | other | -1 | 33471 | 33887 |
| YP_009289719.1 | NC_031097_p59 | hypothetical protein | phrog_7793 | unknown function | unknown function | 1 | 42646 | 42786 |
| YP_009289714.1 | NC_031097_p54 | ssDNA binding protein | phrog_4171 | RecT-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 40332 | 41480 |
| YP_009289734.1 | NC_031097_p74 | HTH DNA binding domain protein | phrog_2474 | MerR-like transcriptional regulator | transcription regulation | 1 | 50293 | 50619 |
| YP_009289691.1 | NC_031097_p31 | hypothetical protein | singleton | unknown function | unknown function | -1 | 27955 | 28206 |
| YP_009289671.1 | NC_031097_p11 | head-to-tail connector protein | phrog_2595 | head-tail connector protein | connector | 1 | 8035 | 8475 |
| YP_009289729.1 | NC_031097_p69 | resolvase | phrog_34 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 48225 | 48590 |
| YP_009289698.1 | NC_031097_p38 | hypothetical protein | phrog_19414 | antitoxin from a toxin-antitoxin system | moron, auxiliary metabolic gene and host takeover | 1 | 32858 | 33172 |
| YP_009289678.1 | NC_031097_p18 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 16952 | 17779 |
| YP_009289690.1 | NC_031097_p30 | hypothetical protein | singleton | unknown function | unknown function | -1 | 27699 | 27833 |
| YP_009289707.1 | NC_031097_p47 | hypothetical protein | phrog_1840 | excisionase | integration and excision | 1 | 37027 | 37317 |
| YP_009289724.1 | NC_031097_p64 | hypothetical protein | phrog_2045 | unknown function | unknown function | 1 | 45252 | 46211 |
| YP_009289679.1 | NC_031097_p19 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 17776 | 19374 |
| YP_009289705.1 | NC_031097_p45 | antirepressor | phrog_130 | anti-repressor Ant | transcription regulation | 1 | 35970 | 36806 |
| YP_009289669.1 | NC_031097_p9 | head-to-tail connector protein | phrog_3881 | head-tail connector protein | connector | 1 | 7329 | 7697 |
| YP_009289715.1 | NC_031097_p55 | hypothetical protein | phrog_15664 | unknown function | unknown function | 1 | 41477 | 41926 |
| YP_009289689.1 | NC_031097_p29 | hypothetical protein | phrog_7114 | minor tail protein | tail | 1 | 27062 | 27658 |
| YP_009289699.1 | NC_031097_p39 | hypothetical protein | phrog_5316 | unknown function | unknown function | -1 | 33250 | 33471 |
| YP_009289693.1 | NC_031097_p33 | hypothetical protein | phrog_18428 | unknown function | unknown function | -1 | 29858 | 30211 |
| YP_009289666.1 | NC_031097_p6 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 4693 | 6342 |
| YP_009289676.1 | NC_031097_p16 | hypothetical protein | phrog_2320 | unknown function | unknown function | -1 | 10161 | 10478 |
| YP_009289706.1 | NC_031097_p46 | hypothetical protein | phrog_7723 | unknown function | unknown function | 1 | 36803 | 37030 |
| YP_009289686.1 | NC_031097_p26 | minor tail protein | phrog_2689 | minor tail protein | tail | 1 | 22938 | 24443 |
| YP_009289726.1 | NC_031097_p66 | hypothetical protein | phrog_2149 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 46410 | 47486 |
| YP_009289702.1 | NC_031097_p42 | HTH DNA binding domain protein | phrog_6463 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 35090 | 35341 |
| YP_009289739.1 | NC_031097_p79 | HNH endonuclease | phrog_589 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 51694 | 52026 |
| YP_009289718.1 | NC_031097_p58 | ASC-1 superfamily protein | phrog_986 | RNA-binding protein | DNA, RNA and nucleotide metabolism | 1 | 42299 | 42649 |
| YP_009289736.1 | NC_031097_p76 | hypothetical protein | phrog_17450 | unknown function | unknown function | 1 | 50929 | 51261 |
| YP_009289663.1 | NC_031097_p3 | hypothetical protein | phrog_4810 | unknown function | unknown function | 1 | 2219 | 2380 |
| YP_009289685.1 | NC_031097_p25 | lysin B | phrog_102 | endolysin | lysis | 1 | 22321 | 22938 |
| YP_009289716.1 | NC_031097_p56 | hypothetical protein | phrog_10709 | unknown function | unknown function | 1 | 41935 | 42105 |
| YP_009289674.1 | NC_031097_p15 | tail assembly chaperone | phrog_3860 | tail assembly chaperone | tail | 1 | 9285 | 9932 |
| YP_009289737.1 | NC_031097_p77 | hypothetical protein | phrog_15735 | unknown function | unknown function | 1 | 51261 | 51386 |
| YP_009289697.1 | NC_031097_p37 | hypothetical protein | phrog_21927 | unknown function | unknown function | -1 | 32400 | 32714 |
| YP_009289675.2 | NC_031097_p14 | tail assembly chaperone | phrog_3860 | tail assembly chaperone | tail | 1 | 9285 | 10189 |
| YP_009289709.1 | NC_031097_p49 | hypothetical protein | phrog_204 | unknown function | unknown function | 1 | 37603 | 37944 |
| YP_009289725.1 | NC_031097_p65 | hypothetical protein | phrog_10621 | unknown function | unknown function | 1 | 46211 | 46420 |
| YP_009289733.1 | NC_031097_p73 | hypothetical protein | phrog_1467 | unknown function | unknown function | 1 | 49631 | 50296 |
| YP_009289731.1 | NC_031097_p71 | hypothetical protein | phrog_25240 | unknown function | unknown function | 1 | 49096 | 49392 |
| YP_009289681.1 | NC_031097_p21 | lysin A, peptidase domain | phrog_3084 | endolysin | lysis | 1 | 20173 | 21084 |
| YP_009289695.1 | NC_031097_p35 | hypothetical protein | phrog_31563 | unknown function | unknown function | -1 | 30498 | 31004 |
| YP_009289662.1 | NC_031097_p2 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 498 | 2222 |
| YP_009289717.1 | NC_031097_p57 | hypothetical protein | phrog_20668 | unknown function | unknown function | 1 | 42102 | 42302 |
| YP_009289687.1 | NC_031097_p27 | hypothetical protein | phrog_13955 | unknown function | unknown function | 1 | 24440 | 24823 |
| YP_009289712.1 | NC_031097_p52 | hypothetical protein | phrog_2857 | tail fiber protein | tail | 1 | 39155 | 39463 |
| YP_009289688.1 | NC_031097_p28 | minor tail protein | phrog_8780 | minor tail protein | tail | 1 | 24801 | 27062 |
| YP_009289721.1 | NC_031097_p61 | hypothetical protein | phrog_32254 | unknown function | unknown function | -1 | 44369 | 44713 |
| YP_009289694.1 | NC_031097_p34 | toxin | phrog_17063 | toxin | moron, auxiliary metabolic gene and host takeover | -1 | 30208 | 30444 |
| YP_009289696.1 | NC_031097_p36 | integrase | phrog_1 | integrase | integration and excision | 1 | 31303 | 32385 |
| YP_009289684.1 | NC_031097_p24 | membrane protein | phrog_726 | unknown function | unknown function | 1 | 21911 | 22324 |
| YP_009289682.1 | NC_031097_p22 | membrane protein | phrog_565 | holin | lysis | 1 | 21086 | 21442 |
| YP_009289735.1 | NC_031097_p75 | hypothetical protein | phrog_9543 | unknown function | unknown function | 1 | 50616 | 50942 |
| YP_009289708.1 | NC_031097_p48 | hypothetical protein | phrog_9213 | unknown function | unknown function | 1 | 37314 | 37517 |
| YP_009289692.1 | NC_031097_p32 | hypothetical protein | singleton | unknown function | unknown function | 1 | 29288 | 29614 |