| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_031104 |
Definition |
Pseudomonas phage vB_PaeP_MAG4, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; Litunavirus; unclassified Litunavirus. |
DB of origin |
REFSEQ |
Length |
72979 |
Host Name |
Pseudomonas aeruginosa |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
94 |
%GC |
54.81 |
Number of singletons |
4 |
Number of paralogs |
2 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009290564.1 | NC_031104_p30 | hypothetical protein | phrog_26633 | unknown function | unknown function | -1 | 11742 | 12038 |
| YP_009290554.1 | NC_031104_p20 | hypothetical protein | phrog_8597 | unknown function | unknown function | 1 | 6894 | 7154 |
| YP_009290605.1 | NC_031104_p71 | hypothetical protein | phrog_7891 | unknown function | unknown function | 1 | 44314 | 44631 |
| YP_009290560.1 | NC_031104_p26 | hypothetical protein | phrog_7111 | unknown function | unknown function | 1 | 9544 | 10170 |
| YP_009290624.1 | NC_031104_p90 | hypothetical protein | phrog_8800 | unknown function | unknown function | 1 | 70405 | 70617 |
| YP_009290594.1 | NC_031104_p60 | hypothetical protein | phrog_2452 | unknown function | unknown function | 1 | 36282 | 36656 |
| YP_009290539.1 | NC_031104_p5 | hypothetical protein | phrog_7875 | unknown function | unknown function | 1 | 1547 | 1798 |
| YP_009290537.1 | NC_031104_p3 | hypothetical protein | phrog_3968 | unknown function | unknown function | 1 | 1066 | 1308 |
| YP_009290546.1 | NC_031104_p12 | hypothetical protein | phrog_8570 | unknown function | unknown function | 1 | 3369 | 3554 |
| YP_009290577.1 | NC_031104_p43 | hypothetical protein | phrog_8620 | unknown function | unknown function | 1 | 21898 | 22296 |
| YP_009290566.1 | NC_031104_p32 | hypothetical protein | phrog_8112 | unknown function | unknown function | 1 | 12516 | 12701 |
| YP_009290610.1 | NC_031104_p76 | hypothetical protein | phrog_2220 | unknown function | unknown function | -1 | 57070 | 59292 |
| YP_009290547.1 | NC_031104_p13 | hypothetical protein | phrog_6271 | toxin | moron, auxiliary metabolic gene and host takeover | 1 | 3648 | 3938 |
| YP_009290559.1 | NC_031104_p25 | hypothetical protein | phrog_6140 | unknown function | unknown function | 1 | 9316 | 9540 |
| YP_009290586.1 | NC_031104_p52 | hypothetical protein | phrog_3108 | unknown function | unknown function | -1 | 28830 | 29354 |
| YP_009290535.1 | NC_031104_p1 | hypothetical protein | phrog_6483 | unknown function | unknown function | 1 | 200 | 454 |
| YP_009290593.1 | NC_031104_p59 | hypothetical protein | phrog_3360 | unknown function | unknown function | 1 | 35857 | 36285 |
| YP_009290536.1 | NC_031104_p2 | hypothetical protein | phrog_7624 | unknown function | unknown function | 1 | 856 | 1047 |
| YP_009290557.1 | NC_031104_p23 | DNA-dependent RNA polymerase | phrog_2051 | RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 7752 | 8993 |
| YP_009290626.1 | NC_031104_p92 | hypothetical protein | phrog_9146 | unknown function | unknown function | 1 | 70865 | 71248 |
| YP_009290625.1 | NC_031104_p91 | hypothetical protein | phrog_10651 | unknown function | unknown function | 1 | 70614 | 70874 |
| YP_009290558.1 | NC_031104_p24 | hypothetical protein | phrog_8738 | unknown function | unknown function | 1 | 9091 | 9243 |
| YP_009290552.1 | NC_031104_p18 | hypothetical protein | phrog_8585 | unknown function | unknown function | 1 | 5590 | 5937 |
| YP_009290561.1 | NC_031104_p27 | hypothetical protein | phrog_8613 | unknown function | unknown function | 1 | 10167 | 10721 |
| YP_009290584.1 | NC_031104_p50 | hypothetical protein | phrog_8796 | unknown function | unknown function | 1 | 27701 | 28258 |
| YP_009290590.1 | NC_031104_p56 | hypothetical protein | phrog_3370 | unknown function | unknown function | -1 | 33211 | 33882 |
| YP_009290587.1 | NC_031104_p53 | hypothetical protein | phrog_2687 | unknown function | unknown function | -1 | 29351 | 29545 |
| YP_009290592.1 | NC_031104_p58 | hypothetical protein | phrog_496 | tail fiber protein | tail | -1 | 34175 | 35464 |
| YP_009290573.1 | NC_031104_p39 | hypothetical protein | phrog_7095 | unknown function | unknown function | 1 | 17930 | 18457 |
| YP_009290576.1 | NC_031104_p42 | cytidine and deoxycytidylate deaminase zinc-binding region | phrog_174 | dCMP deaminase | DNA, RNA and nucleotide metabolism | 1 | 21253 | 21723 |
| YP_009290579.1 | NC_031104_p45 | DNA topoisomerase VI subunit B | phrog_2979 | RIIA lysis inhibitor | lysis | 1 | 22488 | 25004 |
| YP_009290544.1 | NC_031104_p10 | hypothetical protein | phrog_8334 | unknown function | unknown function | 1 | 2845 | 3078 |
| YP_009290609.1 | NC_031104_p75 | hypothetical protein | phrog_2646 | unknown function | unknown function | -1 | 56622 | 57089 |
| YP_009290614.1 | NC_031104_p80 | hypothetical protein | phrog_2120 | tail length tape measure protein | tail | -1 | 62274 | 63095 |
| YP_009290620.1 | NC_031104_p86 | hypothetical protein | phrog_2125 | virion structural protein | head and packaging | -1 | 66799 | 67533 |
| YP_009290611.1 | NC_031104_p77 | hypothetical protein | phrog_2050 | virion structural protein | head and packaging | -1 | 59349 | 60314 |
| YP_009290615.1 | NC_031104_p81 | hypothetical protein | singleton | unknown function | unknown function | -1 | 63110 | 63421 |
| YP_009290607.1 | NC_031104_p73 | hypothetical protein | phrog_2206 | virion RNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 44860 | 55056 |
| YP_009290608.1 | NC_031104_p74 | hypothetical protein | phrog_6467 | unknown function | unknown function | -1 | 55057 | 56622 |
| YP_009290572.1 | NC_031104_p38 | ATP-dependent RecD-like DNA helicase | phrog_325 | Dda-like helicase | DNA, RNA and nucleotide metabolism | 1 | 16764 | 17930 |
| YP_009290553.1 | NC_031104_p19 | hypothetical protein | phrog_2166 | N4-like RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 5949 | 6881 |
| YP_009290543.1 | NC_031104_p9 | hypothetical protein | phrog_8885 | unknown function | unknown function | 1 | 2627 | 2848 |
| YP_009290623.1 | NC_031104_p89 | hypothetical protein | phrog_9047 | unknown function | unknown function | 1 | 69974 | 70405 |
| YP_009290591.1 | NC_031104_p57 | hypothetical protein | phrog_4047 | unknown function | unknown function | -1 | 33879 | 34178 |
| YP_009290555.1 | NC_031104_p21 | hypothetical protein | singleton | unknown function | unknown function | 1 | 7159 | 7440 |
| YP_009290612.1 | NC_031104_p78 | hypothetical protein | phrog_2130 | unknown function | unknown function | -1 | 60318 | 60983 |
| YP_009290613.1 | NC_031104_p79 | hypothetical protein | phrog_1357 | major head protein | head and packaging | -1 | 61040 | 62239 |
| YP_009290548.1 | NC_031104_p14 | hypothetical protein | phrog_8775 | unknown function | unknown function | 1 | 4123 | 4458 |
| YP_009290569.1 | NC_031104_p35 | hypothetical protein | phrog_1297 | ATPase | other | 1 | 13848 | 14918 |
| YP_009290581.1 | NC_031104_p47 | hypothetical protein | phrog_7722 | unknown function | unknown function | 1 | 26842 | 27066 |
| YP_009290617.1 | NC_031104_p83 | hypothetical protein | phrog_1216 | portal protein | head and packaging | -1 | 63829 | 66009 |
| YP_009290606.1 | NC_031104_p72 | hypothetical protein | phrog_8152 | unknown function | unknown function | 1 | 44641 | 44844 |
| YP_009290595.1 | NC_031104_p61 | hypothetical protein | phrog_2139 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 36658 | 37668 |
| YP_009290538.1 | NC_031104_p4 | hypothetical protein | phrog_3968 | unknown function | unknown function | 1 | 1326 | 1547 |
| YP_009290582.1 | NC_031104_p48 | hypothetical protein | phrog_6854 | holin | lysis | 1 | 27150 | 27467 |
| YP_009290540.1 | NC_031104_p6 | hypothetical protein | phrog_2614 | unknown function | unknown function | 1 | 1802 | 2110 |
| YP_009290542.1 | NC_031104_p8 | hypothetical protein | phrog_8477 | unknown function | unknown function | 1 | 2394 | 2597 |
| YP_009290551.1 | NC_031104_p17 | hypothetical protein | phrog_335 | phosphatase | other | 1 | 5110 | 5550 |
| YP_009290570.1 | NC_031104_p36 | hypothetical protein | phrog_14291 | unknown function | unknown function | 1 | 14930 | 15448 |
| YP_009290565.1 | NC_031104_p31 | hypothetical protein | singleton | unknown function | unknown function | 1 | 12277 | 12507 |
| YP_009290578.1 | NC_031104_p44 | hypothetical protein | phrog_10495 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 22293 | 22484 |
| YP_009290602.1 | NC_031104_p68 | hypothetical protein | phrog_7564 | unknown function | unknown function | 1 | 42776 | 43213 |
| YP_009290575.1 | NC_031104_p41 | hypothetical protein | phrog_12945 | ferredoxin | moron, auxiliary metabolic gene and host takeover | 1 | 21069 | 21293 |
| YP_009290574.1 | NC_031104_p40 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 18457 | 21072 |
| YP_009290618.1 | NC_031104_p84 | deoxyuridine 5'-triphosphate nucleotidohydrolase | phrog_135 | dUTPase | DNA, RNA and nucleotide metabolism | 1 | 66044 | 66463 |
| YP_009290567.1 | NC_031104_p33 | ATP-dependent Clp protease ATP-binding subunit ClpX | phrog_5534 | unknown function | unknown function | 1 | 12744 | 13577 |
| YP_009290627.1 | NC_031104_p93 | hypothetical protein | phrog_8657 | unknown function | unknown function | 1 | 71441 | 72091 |
| YP_009290580.1 | NC_031104_p46 | hypothetical protein | phrog_2886 | RIIB lysis inhibitor | lysis | 1 | 25016 | 26794 |
| YP_009290583.1 | NC_031104_p49 | hypothetical protein | phrog_8307 | unknown function | unknown function | 1 | 27517 | 27708 |
| YP_009290596.1 | NC_031104_p62 | hypothetical protein | phrog_2135 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 37683 | 39851 |
| YP_009290599.1 | NC_031104_p65 | hypothetical protein | phrog_6026 | unknown function | unknown function | 1 | 41411 | 41776 |
| YP_009290601.1 | NC_031104_p67 | hypothetical protein | phrog_159 | RuvC-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 42204 | 42764 |
| YP_009290603.1 | NC_031104_p69 | hypothetical protein | phrog_7212 | unknown function | unknown function | 1 | 43271 | 43675 |
| YP_009290541.1 | NC_031104_p7 | hypothetical protein | phrog_8449 | unknown function | unknown function | 1 | 2094 | 2390 |
| YP_009290568.1 | NC_031104_p34 | hypothetical protein | phrog_4781 | unknown function | unknown function | 1 | 13574 | 13816 |
| YP_009290563.1 | NC_031104_p29 | hypothetical protein | phrog_8374 | unknown function | unknown function | 1 | 11302 | 11820 |
| YP_009290600.1 | NC_031104_p66 | hypothetical protein | phrog_3934 | unknown function | unknown function | 1 | 41773 | 42216 |
| YP_009290597.1 | NC_031104_p63 | hypothetical protein | phrog_124 | Sak4-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 39900 | 40634 |
| YP_009290619.1 | NC_031104_p85 | hypothetical protein | phrog_8880 | unknown function | unknown function | 1 | 66467 | 66766 |
| YP_009290622.1 | NC_031104_p88 | hypothetical protein | phrog_2109 | unknown function | unknown function | -1 | 69179 | 69907 |
| YP_009290621.1 | NC_031104_p87 | hypothetical protein | phrog_38 | terminase large subunit | head and packaging | -1 | 67530 | 69182 |
| YP_009290585.1 | NC_031104_p51 | hypothetical protein | phrog_312 | Rz-like spanin | lysis | -1 | 28321 | 28833 |
| YP_009290604.1 | NC_031104_p70 | hypothetical protein | phrog_8394 | unknown function | unknown function | 1 | 44081 | 44317 |
| YP_009290589.1 | NC_031104_p55 | hypothetical protein | phrog_7697 | tail fiber protein | tail | -1 | 29900 | 33172 |
| YP_009290562.1 | NC_031104_p28 | hypothetical protein | phrog_8451 | unknown function | unknown function | 1 | 10721 | 11302 |
| YP_009290598.1 | NC_031104_p64 | hypothetical protein | phrog_743 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 40661 | 41407 |
| YP_009290571.1 | NC_031104_p37 | hypothetical protein | phrog_1314 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 15448 | 16674 |
| YP_009290628.1 | NC_031104_p94 | hypothetical protein | phrog_6483 | unknown function | unknown function | 1 | 72510 | 72764 |
| YP_009290588.1 | NC_031104_p54 | hypothetical protein | singleton | unknown function | unknown function | 1 | 29679 | 29987 |
| YP_009290545.1 | NC_031104_p11 | hypothetical protein | phrog_8895 | unknown function | unknown function | 1 | 3075 | 3296 |
| YP_009290550.1 | NC_031104_p16 | hypothetical protein | phrog_7756 | unknown function | unknown function | 1 | 4859 | 5110 |
| YP_009290556.1 | NC_031104_p22 | hypothetical protein | phrog_8144 | unknown function | unknown function | 1 | 7445 | 7717 |
| YP_009290616.1 | NC_031104_p82 | hypothetical protein | phrog_2346 | unknown function | unknown function | -1 | 63421 | 63759 |
| YP_009290549.1 | NC_031104_p15 | hypothetical protein | phrog_2072 | unknown function | unknown function | 1 | 4458 | 4859 |