Genomic map of Gordonia phage Jumbo (NC_031109)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_031109
Definition
Gordonia phage Jumbo, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Gorjumvirus; Gordonia virus Jumbo.
DB of origin
REFSEQ
Length
78302
Host Name
Gordonia terrae
Host domain
Bacteria
Is prophage?
undef
Number of proteins
102
%GC
54.45
Number of singletons
36
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009291032.1 NC_031109_p67 hypothetical protein singleton unknown function unknown function -1 57678 58022
YP_009291063.1 NC_031109_p98 hypothetical protein singleton unknown function unknown function -1 76030 76302
YP_009291064.1 NC_031109_p99 hypothetical protein singleton unknown function unknown function -1 76305 76433
YP_009290971.1 NC_031109_p6 terminase small subunit phrog_16015 terminase small subunit head and packaging 1 6378 7985
YP_009291000.1 NC_031109_p35 DNA methylase phrog_363 DNA methyltransferase other 1 41371 41904
YP_009291021.1 NC_031109_p56 helix-turn-helix DNA binding domain protein phrog_10045 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 51482 51745
YP_009290996.1 NC_031109_p31 hypothetical protein phrog_5120 unknown function unknown function 1 39920 40156
YP_009290995.1 NC_031109_p30 lysin A, N-acetyl-beta-D-muramidase domain phrog_880 endolysin lysis 1 39270 39923
YP_009291047.1 NC_031109_p82 hypothetical protein phrog_20135 unknown function unknown function -1 64632 65147
YP_009291035.1 NC_031109_p70 hypothetical protein singleton unknown function unknown function -1 59262 60179
YP_009291055.1 NC_031109_p90 hypothetical protein singleton unknown function unknown function -1 67782 68159
YP_009291062.1 NC_031109_p97 hypothetical protein phrog_15295 unknown function unknown function -1 75085 75858
YP_009290970.1 NC_031109_p5 hypothetical protein phrog_5362 DNA primase DNA, RNA and nucleotide metabolism -1 5109 5942
YP_009290993.1 NC_031109_p28 endolysin phrog_13480 endolysin lysis 1 38211 38912
YP_009290967.1 NC_031109_p2 hypothetical protein phrog_5558 Lar-like restriction alleviation protein moron, auxiliary metabolic gene and host takeover -1 3221 3625
YP_009291004.1 NC_031109_p39 hypothetical protein phrog_9090 membrane protein moron, auxiliary metabolic gene and host takeover 1 43199 43576
YP_009291013.1 NC_031109_p48 hypothetical protein phrog_14812 unknown function unknown function -1 48096 48392
YP_009291059.1 NC_031109_p94 hypothetical protein singleton unknown function unknown function 1 73613 73927
YP_009291026.1 NC_031109_p61 hypothetical protein phrog_14234 unknown function unknown function -1 54588 55250
YP_009291020.1 NC_031109_p55 exonuclease phrog_192 DNA polymerase exonuclease subunit DNA, RNA and nucleotide metabolism -1 50908 51510
YP_009291061.1 NC_031109_p96 hypothetical protein singleton unknown function unknown function -1 74476 74841
YP_009290990.1 NC_031109_p25 hypothetical protein phrog_416 minor tail protein tail 1 36377 37471
YP_009291018.1 NC_031109_p53 DNA polymerase III sliding clamp (beta) phrog_947 DNA polymerase processivity factor DNA, RNA and nucleotide metabolism -1 49626 50756
YP_009290981.1 NC_031109_p16 hypothetical protein phrog_5299 unknown function unknown function 1 16552 17055
YP_009291066.1 NC_031109_p101 hypothetical protein singleton unknown function unknown function -1 76690 76956
YP_009291053.1 NC_031109_p88 hypothetical protein singleton unknown function unknown function -1 67379 67549
YP_009291007.1 NC_031109_p42 MazG-like nucleoside triphosphate pyrophosphohydrolase phrog_3301 pyrophosphatase other -1 44925 45467
YP_009291029.1 NC_031109_p64 hypothetical protein phrog_15020 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 56566 57024
YP_009290968.1 NC_031109_p3 hypothetical protein singleton unknown function unknown function -1 3660 3803
YP_009290991.1 NC_031109_p26 hypothetical protein phrog_24602 unknown function unknown function 1 37489 37788
YP_009291045.1 NC_031109_p80 hypothetical protein singleton unknown function unknown function -1 63386 63871
YP_009291041.1 NC_031109_p76 hypothetical protein phrog_12293 unknown function unknown function -1 62250 62648
YP_009291011.1 NC_031109_p46 hypothetical protein singleton unknown function unknown function -1 47638 47814
YP_009291003.1 NC_031109_p38 membrane protein phrog_5552 membrane protein moron, auxiliary metabolic gene and host takeover 1 42756 43202
YP_009291058.1 NC_031109_p93 AAA-ATPase phrog_5424 ATPase other -1 71151 73067
YP_009291010.1 NC_031109_p45 RecB-like exonuclease phrog_69 exonuclease DNA, RNA and nucleotide metabolism -1 46392 47585
YP_009290975.1 NC_031109_p10 capsid maturation protease phrog_976 head maturation protease head and packaging 1 12341 13486
YP_009291017.1 NC_031109_p52 hypothetical protein singleton unknown function unknown function -1 49414 49626
YP_009290994.1 NC_031109_p29 hypothetical protein phrog_18568 unknown function unknown function 1 38914 39270
YP_009290974.1 NC_031109_p9 hypothetical protein phrog_30241 unknown function unknown function 1 12032 12328
YP_009291009.1 NC_031109_p44 hypothetical protein phrog_12343 unknown function unknown function -1 45851 46387
YP_009291046.1 NC_031109_p81 methyltransferase phrog_15480 methyltransferase other -1 63868 64635
YP_009291022.1 NC_031109_p57 DNA helicase phrog_62 DNA helicase DNA, RNA and nucleotide metabolism -1 51742 53259
YP_009291033.1 NC_031109_p68 hypothetical protein singleton unknown function unknown function -1 58019 58375
YP_009291048.1 NC_031109_p83 hypothetical protein singleton unknown function unknown function -1 65149 65700
YP_009291054.1 NC_031109_p89 hypothetical protein singleton unknown function unknown function -1 67546 67776
YP_009291067.1 NC_031109_p102 hypothetical protein singleton unknown function unknown function -1 77425 77790
YP_009291057.1 NC_031109_p92 hypothetical protein singleton unknown function unknown function -1 70789 71097
YP_009291060.1 NC_031109_p95 hypothetical protein singleton unknown function unknown function -1 74138 74368
YP_009291050.1 NC_031109_p85 hypothetical protein singleton unknown function unknown function -1 66159 66347
YP_009291056.1 NC_031109_p91 hypothetical protein phrog_5298 cobalamin biosynthesis protein moron, auxiliary metabolic gene and host takeover -1 68156 70744
YP_009290987.1 NC_031109_p22 minor tail protein phrog_5287 minor tail protein tail 1 28732 31320
YP_009291031.1 NC_031109_p66 hypothetical protein phrog_301 secreted protein other -1 57277 57675
YP_009291015.1 NC_031109_p50 hypothetical protein singleton unknown function unknown function -1 48949 49224
YP_009290999.1 NC_031109_p34 membrane protein phrog_565 holin lysis 1 40874 41350
YP_009291023.1 NC_031109_p58 hypothetical protein phrog_16754 unknown function unknown function -1 53262 53648
YP_009290988.1 NC_031109_p23 minor tail protein phrog_1887 tail protein tail 1 31333 33522
YP_009291001.1 NC_031109_p36 hypothetical protein phrog_10223 DNA methyltransferase other 1 42029 42262
YP_009291052.1 NC_031109_p87 hypothetical protein singleton unknown function unknown function -1 66667 67005
YP_009290969.1 NC_031109_p4 hypothetical protein singleton unknown function unknown function -1 3823 5094
YP_009291019.1 NC_031109_p54 hypothetical protein singleton unknown function unknown function -1 50753 50899
YP_009291024.1 NC_031109_p59 hypothetical protein singleton unknown function unknown function -1 53653 53898
YP_009291005.1 NC_031109_p40 hypothetical protein phrog_16963 unknown function unknown function 1 43587 43928
YP_009291006.1 NC_031109_p41 lysin B phrog_102 endolysin lysis 1 43925 44704
YP_009291025.1 NC_031109_p60 hypothetical protein singleton unknown function unknown function -1 54102 54431
YP_009290998.1 NC_031109_p33 hypothetical protein singleton unknown function unknown function 1 40540 40905
YP_009291002.1 NC_031109_p37 membrane protein phrog_2272 unknown function unknown function 1 42278 42769
YP_009291039.1 NC_031109_p74 HTH DNA binding domain protein phrog_5406 unknown function unknown function -1 61174 61893
YP_009291051.1 NC_031109_p86 hypothetical protein singleton unknown function unknown function -1 66399 66665
YP_009290997.1 NC_031109_p32 lysin A, peptidase domain phrog_18341 peptidase other 1 40153 40524
YP_009291042.1 NC_031109_p77 hypothetical protein phrog_16893 unknown function unknown function -1 62641 62940
YP_009291043.1 NC_031109_p78 hypothetical protein singleton unknown function unknown function -1 62945 63205
YP_009291030.1 NC_031109_p65 hypothetical protein phrog_17617 unknown function unknown function -1 57005 57268
YP_009291065.1 NC_031109_p100 hypothetical protein singleton unknown function unknown function -1 76439 76675
YP_009290977.1 NC_031109_p12 major capsid protein phrog_29 major head protein head and packaging 1 13987 15156
YP_009290978.1 NC_031109_p13 hypothetical protein phrog_15701 unknown function unknown function 1 15156 15485
YP_009291008.1 NC_031109_p43 hypothetical protein phrog_7609 unknown function unknown function -1 45460 45858
YP_009290989.1 NC_031109_p24 minor tail protein phrog_346 minor tail protein tail 1 33519 36377
YP_009291016.1 NC_031109_p51 hypothetical protein singleton unknown function unknown function -1 49202 49417
YP_009290985.1 NC_031109_p20 tail assembly chaperone phrog_3096 tail assembly chaperone tail 1 18571 19182
YP_009290973.1 NC_031109_p8 portal protein phrog_113 portal protein head and packaging 1 10158 12023
YP_009291034.1 NC_031109_p69 integrase phrog_1 integrase integration and excision -1 58372 59172
YP_009291028.1 NC_031109_p63 hypothetical protein phrog_5686 unknown function unknown function -1 55755 56576
YP_009290992.1 NC_031109_p27 hypothetical protein phrog_240 head protein head and packaging 1 37792 38157
YP_009290982.1 NC_031109_p17 hypothetical protein phrog_18688 unknown function unknown function 1 17071 17403
YP_009290972.1 NC_031109_p7 terminase large subunit phrog_2 terminase large subunit head and packaging 1 7988 10030
YP_009291027.1 NC_031109_p62 hypothetical protein singleton unknown function unknown function -1 55383 55751
YP_009290976.1 NC_031109_p11 scaffolding protein phrog_5455 head decoration head and packaging 1 13502 13969
YP_009290979.1 NC_031109_p14 hypothetical protein phrog_195 head-tail adaptor connector 1 15533 16051
YP_009291012.1 NC_031109_p47 WhiB family transcription factor phrog_472 WhiB transcriptional factor transcription regulation -1 47818 48027
YP_009291036.1 NC_031109_p71 hypothetical protein phrog_32174 unknown function unknown function -1 60182 60535
YP_009291038.1 NC_031109_p73 hypothetical protein singleton unknown function unknown function -1 60770 61177
YP_009290983.1 NC_031109_p18 major tail protein phrog_290 minor tail protein tail 1 17409 18440
YP_009291049.1 NC_031109_p84 hypothetical protein singleton unknown function unknown function -1 65772 66155
YP_009290984.1 NC_031109_p19 tail assembly chaperone phrog_3096 tail assembly chaperone tail 1 18571 19427
YP_009290980.1 NC_031109_p15 hypothetical protein phrog_26 tail completion or Neck1 protein connector 1 16052 16555
YP_009290986.1 NC_031109_p21 tape measure protein phrog_5448 tail length tape measure protein tail 1 19522 28731
YP_009291037.1 NC_031109_p72 hypothetical protein singleton unknown function unknown function -1 60535 60777
YP_009291014.1 NC_031109_p49 resolvase phrog_140 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism -1 48386 48952
YP_009291040.1 NC_031109_p75 hypothetical protein phrog_13626 unknown function unknown function -1 62012 62257
YP_009290966.1 NC_031109_p1 hypothetical protein phrog_5311 helicase DNA, RNA and nucleotide metabolism -1 1203 3224
YP_009291044.1 NC_031109_p79 hypothetical protein singleton unknown function unknown function -1 63202 63375