| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_031109 |
Definition |
Gordonia phage Jumbo, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Gorjumvirus; Gordonia virus Jumbo. |
DB of origin |
REFSEQ |
Length |
78302 |
Host Name |
Gordonia terrae |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
102 |
%GC |
54.45 |
Number of singletons |
36 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009291032.1 | NC_031109_p67 | hypothetical protein | singleton | unknown function | unknown function | -1 | 57678 | 58022 |
| YP_009291063.1 | NC_031109_p98 | hypothetical protein | singleton | unknown function | unknown function | -1 | 76030 | 76302 |
| YP_009291064.1 | NC_031109_p99 | hypothetical protein | singleton | unknown function | unknown function | -1 | 76305 | 76433 |
| YP_009290971.1 | NC_031109_p6 | terminase small subunit | phrog_16015 | terminase small subunit | head and packaging | 1 | 6378 | 7985 |
| YP_009291000.1 | NC_031109_p35 | DNA methylase | phrog_363 | DNA methyltransferase | other | 1 | 41371 | 41904 |
| YP_009291021.1 | NC_031109_p56 | helix-turn-helix DNA binding domain protein | phrog_10045 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 51482 | 51745 |
| YP_009290996.1 | NC_031109_p31 | hypothetical protein | phrog_5120 | unknown function | unknown function | 1 | 39920 | 40156 |
| YP_009290995.1 | NC_031109_p30 | lysin A, N-acetyl-beta-D-muramidase domain | phrog_880 | endolysin | lysis | 1 | 39270 | 39923 |
| YP_009291047.1 | NC_031109_p82 | hypothetical protein | phrog_20135 | unknown function | unknown function | -1 | 64632 | 65147 |
| YP_009291035.1 | NC_031109_p70 | hypothetical protein | singleton | unknown function | unknown function | -1 | 59262 | 60179 |
| YP_009291055.1 | NC_031109_p90 | hypothetical protein | singleton | unknown function | unknown function | -1 | 67782 | 68159 |
| YP_009291062.1 | NC_031109_p97 | hypothetical protein | phrog_15295 | unknown function | unknown function | -1 | 75085 | 75858 |
| YP_009290970.1 | NC_031109_p5 | hypothetical protein | phrog_5362 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 5109 | 5942 |
| YP_009290993.1 | NC_031109_p28 | endolysin | phrog_13480 | endolysin | lysis | 1 | 38211 | 38912 |
| YP_009290967.1 | NC_031109_p2 | hypothetical protein | phrog_5558 | Lar-like restriction alleviation protein | moron, auxiliary metabolic gene and host takeover | -1 | 3221 | 3625 |
| YP_009291004.1 | NC_031109_p39 | hypothetical protein | phrog_9090 | membrane protein | moron, auxiliary metabolic gene and host takeover | 1 | 43199 | 43576 |
| YP_009291013.1 | NC_031109_p48 | hypothetical protein | phrog_14812 | unknown function | unknown function | -1 | 48096 | 48392 |
| YP_009291059.1 | NC_031109_p94 | hypothetical protein | singleton | unknown function | unknown function | 1 | 73613 | 73927 |
| YP_009291026.1 | NC_031109_p61 | hypothetical protein | phrog_14234 | unknown function | unknown function | -1 | 54588 | 55250 |
| YP_009291020.1 | NC_031109_p55 | exonuclease | phrog_192 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | -1 | 50908 | 51510 |
| YP_009291061.1 | NC_031109_p96 | hypothetical protein | singleton | unknown function | unknown function | -1 | 74476 | 74841 |
| YP_009290990.1 | NC_031109_p25 | hypothetical protein | phrog_416 | minor tail protein | tail | 1 | 36377 | 37471 |
| YP_009291018.1 | NC_031109_p53 | DNA polymerase III sliding clamp (beta) | phrog_947 | DNA polymerase processivity factor | DNA, RNA and nucleotide metabolism | -1 | 49626 | 50756 |
| YP_009290981.1 | NC_031109_p16 | hypothetical protein | phrog_5299 | unknown function | unknown function | 1 | 16552 | 17055 |
| YP_009291066.1 | NC_031109_p101 | hypothetical protein | singleton | unknown function | unknown function | -1 | 76690 | 76956 |
| YP_009291053.1 | NC_031109_p88 | hypothetical protein | singleton | unknown function | unknown function | -1 | 67379 | 67549 |
| YP_009291007.1 | NC_031109_p42 | MazG-like nucleoside triphosphate pyrophosphohydrolase | phrog_3301 | pyrophosphatase | other | -1 | 44925 | 45467 |
| YP_009291029.1 | NC_031109_p64 | hypothetical protein | phrog_15020 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 56566 | 57024 |
| YP_009290968.1 | NC_031109_p3 | hypothetical protein | singleton | unknown function | unknown function | -1 | 3660 | 3803 |
| YP_009290991.1 | NC_031109_p26 | hypothetical protein | phrog_24602 | unknown function | unknown function | 1 | 37489 | 37788 |
| YP_009291045.1 | NC_031109_p80 | hypothetical protein | singleton | unknown function | unknown function | -1 | 63386 | 63871 |
| YP_009291041.1 | NC_031109_p76 | hypothetical protein | phrog_12293 | unknown function | unknown function | -1 | 62250 | 62648 |
| YP_009291011.1 | NC_031109_p46 | hypothetical protein | singleton | unknown function | unknown function | -1 | 47638 | 47814 |
| YP_009291003.1 | NC_031109_p38 | membrane protein | phrog_5552 | membrane protein | moron, auxiliary metabolic gene and host takeover | 1 | 42756 | 43202 |
| YP_009291058.1 | NC_031109_p93 | AAA-ATPase | phrog_5424 | ATPase | other | -1 | 71151 | 73067 |
| YP_009291010.1 | NC_031109_p45 | RecB-like exonuclease | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 46392 | 47585 |
| YP_009290975.1 | NC_031109_p10 | capsid maturation protease | phrog_976 | head maturation protease | head and packaging | 1 | 12341 | 13486 |
| YP_009291017.1 | NC_031109_p52 | hypothetical protein | singleton | unknown function | unknown function | -1 | 49414 | 49626 |
| YP_009290994.1 | NC_031109_p29 | hypothetical protein | phrog_18568 | unknown function | unknown function | 1 | 38914 | 39270 |
| YP_009290974.1 | NC_031109_p9 | hypothetical protein | phrog_30241 | unknown function | unknown function | 1 | 12032 | 12328 |
| YP_009291009.1 | NC_031109_p44 | hypothetical protein | phrog_12343 | unknown function | unknown function | -1 | 45851 | 46387 |
| YP_009291046.1 | NC_031109_p81 | methyltransferase | phrog_15480 | methyltransferase | other | -1 | 63868 | 64635 |
| YP_009291022.1 | NC_031109_p57 | DNA helicase | phrog_62 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 51742 | 53259 |
| YP_009291033.1 | NC_031109_p68 | hypothetical protein | singleton | unknown function | unknown function | -1 | 58019 | 58375 |
| YP_009291048.1 | NC_031109_p83 | hypothetical protein | singleton | unknown function | unknown function | -1 | 65149 | 65700 |
| YP_009291054.1 | NC_031109_p89 | hypothetical protein | singleton | unknown function | unknown function | -1 | 67546 | 67776 |
| YP_009291067.1 | NC_031109_p102 | hypothetical protein | singleton | unknown function | unknown function | -1 | 77425 | 77790 |
| YP_009291057.1 | NC_031109_p92 | hypothetical protein | singleton | unknown function | unknown function | -1 | 70789 | 71097 |
| YP_009291060.1 | NC_031109_p95 | hypothetical protein | singleton | unknown function | unknown function | -1 | 74138 | 74368 |
| YP_009291050.1 | NC_031109_p85 | hypothetical protein | singleton | unknown function | unknown function | -1 | 66159 | 66347 |
| YP_009291056.1 | NC_031109_p91 | hypothetical protein | phrog_5298 | cobalamin biosynthesis protein | moron, auxiliary metabolic gene and host takeover | -1 | 68156 | 70744 |
| YP_009290987.1 | NC_031109_p22 | minor tail protein | phrog_5287 | minor tail protein | tail | 1 | 28732 | 31320 |
| YP_009291031.1 | NC_031109_p66 | hypothetical protein | phrog_301 | secreted protein | other | -1 | 57277 | 57675 |
| YP_009291015.1 | NC_031109_p50 | hypothetical protein | singleton | unknown function | unknown function | -1 | 48949 | 49224 |
| YP_009290999.1 | NC_031109_p34 | membrane protein | phrog_565 | holin | lysis | 1 | 40874 | 41350 |
| YP_009291023.1 | NC_031109_p58 | hypothetical protein | phrog_16754 | unknown function | unknown function | -1 | 53262 | 53648 |
| YP_009290988.1 | NC_031109_p23 | minor tail protein | phrog_1887 | tail protein | tail | 1 | 31333 | 33522 |
| YP_009291001.1 | NC_031109_p36 | hypothetical protein | phrog_10223 | DNA methyltransferase | other | 1 | 42029 | 42262 |
| YP_009291052.1 | NC_031109_p87 | hypothetical protein | singleton | unknown function | unknown function | -1 | 66667 | 67005 |
| YP_009290969.1 | NC_031109_p4 | hypothetical protein | singleton | unknown function | unknown function | -1 | 3823 | 5094 |
| YP_009291019.1 | NC_031109_p54 | hypothetical protein | singleton | unknown function | unknown function | -1 | 50753 | 50899 |
| YP_009291024.1 | NC_031109_p59 | hypothetical protein | singleton | unknown function | unknown function | -1 | 53653 | 53898 |
| YP_009291005.1 | NC_031109_p40 | hypothetical protein | phrog_16963 | unknown function | unknown function | 1 | 43587 | 43928 |
| YP_009291006.1 | NC_031109_p41 | lysin B | phrog_102 | endolysin | lysis | 1 | 43925 | 44704 |
| YP_009291025.1 | NC_031109_p60 | hypothetical protein | singleton | unknown function | unknown function | -1 | 54102 | 54431 |
| YP_009290998.1 | NC_031109_p33 | hypothetical protein | singleton | unknown function | unknown function | 1 | 40540 | 40905 |
| YP_009291002.1 | NC_031109_p37 | membrane protein | phrog_2272 | unknown function | unknown function | 1 | 42278 | 42769 |
| YP_009291039.1 | NC_031109_p74 | HTH DNA binding domain protein | phrog_5406 | unknown function | unknown function | -1 | 61174 | 61893 |
| YP_009291051.1 | NC_031109_p86 | hypothetical protein | singleton | unknown function | unknown function | -1 | 66399 | 66665 |
| YP_009290997.1 | NC_031109_p32 | lysin A, peptidase domain | phrog_18341 | peptidase | other | 1 | 40153 | 40524 |
| YP_009291042.1 | NC_031109_p77 | hypothetical protein | phrog_16893 | unknown function | unknown function | -1 | 62641 | 62940 |
| YP_009291043.1 | NC_031109_p78 | hypothetical protein | singleton | unknown function | unknown function | -1 | 62945 | 63205 |
| YP_009291030.1 | NC_031109_p65 | hypothetical protein | phrog_17617 | unknown function | unknown function | -1 | 57005 | 57268 |
| YP_009291065.1 | NC_031109_p100 | hypothetical protein | singleton | unknown function | unknown function | -1 | 76439 | 76675 |
| YP_009290977.1 | NC_031109_p12 | major capsid protein | phrog_29 | major head protein | head and packaging | 1 | 13987 | 15156 |
| YP_009290978.1 | NC_031109_p13 | hypothetical protein | phrog_15701 | unknown function | unknown function | 1 | 15156 | 15485 |
| YP_009291008.1 | NC_031109_p43 | hypothetical protein | phrog_7609 | unknown function | unknown function | -1 | 45460 | 45858 |
| YP_009290989.1 | NC_031109_p24 | minor tail protein | phrog_346 | minor tail protein | tail | 1 | 33519 | 36377 |
| YP_009291016.1 | NC_031109_p51 | hypothetical protein | singleton | unknown function | unknown function | -1 | 49202 | 49417 |
| YP_009290985.1 | NC_031109_p20 | tail assembly chaperone | phrog_3096 | tail assembly chaperone | tail | 1 | 18571 | 19182 |
| YP_009290973.1 | NC_031109_p8 | portal protein | phrog_113 | portal protein | head and packaging | 1 | 10158 | 12023 |
| YP_009291034.1 | NC_031109_p69 | integrase | phrog_1 | integrase | integration and excision | -1 | 58372 | 59172 |
| YP_009291028.1 | NC_031109_p63 | hypothetical protein | phrog_5686 | unknown function | unknown function | -1 | 55755 | 56576 |
| YP_009290992.1 | NC_031109_p27 | hypothetical protein | phrog_240 | head protein | head and packaging | 1 | 37792 | 38157 |
| YP_009290982.1 | NC_031109_p17 | hypothetical protein | phrog_18688 | unknown function | unknown function | 1 | 17071 | 17403 |
| YP_009290972.1 | NC_031109_p7 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 7988 | 10030 |
| YP_009291027.1 | NC_031109_p62 | hypothetical protein | singleton | unknown function | unknown function | -1 | 55383 | 55751 |
| YP_009290976.1 | NC_031109_p11 | scaffolding protein | phrog_5455 | head decoration | head and packaging | 1 | 13502 | 13969 |
| YP_009290979.1 | NC_031109_p14 | hypothetical protein | phrog_195 | head-tail adaptor | connector | 1 | 15533 | 16051 |
| YP_009291012.1 | NC_031109_p47 | WhiB family transcription factor | phrog_472 | WhiB transcriptional factor | transcription regulation | -1 | 47818 | 48027 |
| YP_009291036.1 | NC_031109_p71 | hypothetical protein | phrog_32174 | unknown function | unknown function | -1 | 60182 | 60535 |
| YP_009291038.1 | NC_031109_p73 | hypothetical protein | singleton | unknown function | unknown function | -1 | 60770 | 61177 |
| YP_009290983.1 | NC_031109_p18 | major tail protein | phrog_290 | minor tail protein | tail | 1 | 17409 | 18440 |
| YP_009291049.1 | NC_031109_p84 | hypothetical protein | singleton | unknown function | unknown function | -1 | 65772 | 66155 |
| YP_009290984.1 | NC_031109_p19 | tail assembly chaperone | phrog_3096 | tail assembly chaperone | tail | 1 | 18571 | 19427 |
| YP_009290980.1 | NC_031109_p15 | hypothetical protein | phrog_26 | tail completion or Neck1 protein | connector | 1 | 16052 | 16555 |
| YP_009290986.1 | NC_031109_p21 | tape measure protein | phrog_5448 | tail length tape measure protein | tail | 1 | 19522 | 28731 |
| YP_009291037.1 | NC_031109_p72 | hypothetical protein | singleton | unknown function | unknown function | -1 | 60535 | 60777 |
| YP_009291014.1 | NC_031109_p49 | resolvase | phrog_140 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | -1 | 48386 | 48952 |
| YP_009291040.1 | NC_031109_p75 | hypothetical protein | phrog_13626 | unknown function | unknown function | -1 | 62012 | 62257 |
| YP_009290966.1 | NC_031109_p1 | hypothetical protein | phrog_5311 | helicase | DNA, RNA and nucleotide metabolism | -1 | 1203 | 3224 |
| YP_009291044.1 | NC_031109_p79 | hypothetical protein | singleton | unknown function | unknown function | -1 | 63202 | 63375 |