| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_031111 |
Definition |
Mycobacterium phage Gompeii16, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus; unclassified Fromanvirus. |
DB of origin |
REFSEQ |
Length |
53623 |
Host Name |
Mycobacterium |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
91 |
%GC |
63.55 |
Number of singletons |
1 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009291318.1 | NC_031111_p79 | hypothetical protein | phrog_1387 | unknown function | unknown function | -1 | 49763 | 49966 |
| YP_009291270.1 | NC_031111_p31 | minor tail protein | phrog_346 | minor tail protein | tail | 1 | 24589 | 26442 |
| YP_009291250.1 | NC_031111_p11 | terminase | phrog_9 | terminase large subunit | head and packaging | 1 | 7207 | 8895 |
| YP_009291268.1 | NC_031111_p29 | minor tail protein | phrog_981 | minor tail protein | tail | 1 | 23873 | 24220 |
| YP_009291330.1 | NC_031111_p91 | hypothetical protein | phrog_37125 | unknown function | unknown function | -1 | 52907 | 53185 |
| YP_009291300.1 | NC_031111_p61 | glutaredoxin | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | -1 | 42544 | 42810 |
| YP_009291277.1 | NC_031111_p38 | hypothetical protein | phrog_1966 | unknown function | unknown function | -1 | 31504 | 31776 |
| YP_009291245.1 | NC_031111_p6 | hypothetical protein | phrog_553 | minor tail protein | tail | 1 | 3571 | 4185 |
| YP_009291288.1 | NC_031111_p49 | hypothetical protein | phrog_1782 | site-specific recombination directionality factor RDF | integration and excision | -1 | 36926 | 37066 |
| YP_009291304.1 | NC_031111_p65 | hypothetical protein | phrog_1705 | unknown function | unknown function | -1 | 44150 | 44275 |
| YP_009291271.1 | NC_031111_p32 | minor tail protein | phrog_382 | minor tail protein with lysin activity | tail | 1 | 26435 | 27913 |
| YP_009291260.1 | NC_031111_p21 | major tail protein | phrog_117 | major tail protein | tail | 1 | 15075 | 15926 |
| YP_009291255.1 | NC_031111_p16 | head-to-tail connector protein | phrog_1857 | head-tail connector protein | connector | 1 | 12892 | 13410 |
| YP_009291286.1 | NC_031111_p47 | hypothetical protein | phrog_499 | unknown function | unknown function | -1 | 35969 | 36151 |
| YP_009291307.1 | NC_031111_p68 | exonuclease/helicase | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 44778 | 45590 |
| YP_009291266.1 | NC_031111_p27 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 21590 | 23392 |
| YP_009291259.1 | NC_031111_p20 | head-to-tail connector protein | phrog_123 | tail terminator | connector | 1 | 14620 | 15066 |
| YP_009291320.1 | NC_031111_p81 | hypothetical protein | phrog_4396 | unknown function | unknown function | -1 | 50145 | 50273 |
| YP_009291311.1 | NC_031111_p72 | hypothetical protein | phrog_5947 | unknown function | unknown function | -1 | 47201 | 47368 |
| YP_009291258.1 | NC_031111_p19 | head-to-tail connector protein | phrog_321 | tail completion or Neck1 protein | connector | 1 | 14221 | 14616 |
| YP_009291265.1 | NC_031111_p26 | minor tail protein | phrog_1543 | minor tail protein | tail | 1 | 21408 | 21590 |
| YP_009291272.1 | NC_031111_p33 | hypothetical protein | phrog_644 | unknown function | unknown function | 1 | 28000 | 28326 |
| YP_009291257.1 | NC_031111_p18 | head-to-tail connector protein | phrog_320 | head closure Hc1 | connector | 1 | 13859 | 14221 |
| YP_009291283.1 | NC_031111_p44 | DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 33354 | 35183 |
| YP_009291322.1 | NC_031111_p83 | hypothetical protein | phrog_9043 | unknown function | unknown function | -1 | 50470 | 50913 |
| YP_009291314.1 | NC_031111_p75 | hypothetical protein | phrog_1809 | unknown function | unknown function | -1 | 47990 | 48385 |
| YP_009291242.1 | NC_031111_p3 | hypothetical protein | phrog_226 | minor tail protein | tail | 1 | 1166 | 1606 |
| YP_009291261.1 | NC_031111_p22 | tail assembly chaperone | phrog_393 | tail assembly chaperone | tail | 1 | 16039 | 16838 |
| YP_009291319.1 | NC_031111_p80 | hypothetical protein | phrog_1155 | unknown function | unknown function | -1 | 49963 | 50148 |
| YP_009291306.1 | NC_031111_p67 | hypothetical protein | phrog_1763 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 44569 | 44751 |
| YP_009291269.1 | NC_031111_p30 | minor tail protein | phrog_1397 | unknown function | unknown function | 1 | 24217 | 24564 |
| YP_009291295.1 | NC_031111_p56 | hypothetical protein | phrog_5801 | unknown function | unknown function | -1 | 40376 | 40450 |
| YP_009291323.1 | NC_031111_p84 | hypothetical protein | phrog_8345 | unknown function | unknown function | -1 | 50910 | 51116 |
| YP_009291262.1 | NC_031111_p23 | tail assembly chaperone | phrog_330 | tail assembly chaperone | tail | 1 | 16039 | 16416 |
| YP_009291299.1 | NC_031111_p60 | hypothetical protein | phrog_1019 | unknown function | unknown function | -1 | 42461 | 42547 |
| YP_009291273.1 | NC_031111_p34 | hypothetical protein | phrog_1560 | unknown function | unknown function | 1 | 28336 | 28527 |
| YP_009291294.1 | NC_031111_p55 | hypothetical protein | phrog_1783 | unknown function | unknown function | -1 | 40218 | 40379 |
| YP_009291281.1 | NC_031111_p42 | hypothetical protein | phrog_9480 | unknown function | unknown function | -1 | 32700 | 32978 |
| YP_009291264.1 | NC_031111_p25 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 19354 | 21411 |
| YP_009291327.1 | NC_031111_p88 | hypothetical protein | phrog_21527 | unknown function | unknown function | -1 | 52039 | 52170 |
| YP_009291244.1 | NC_031111_p5 | minor tail protein | phrog_1197 | tail protein | tail | 1 | 2491 | 3561 |
| YP_009291305.1 | NC_031111_p66 | hypothetical protein | phrog_520 | unknown function | unknown function | -1 | 44272 | 44565 |
| YP_009291316.1 | NC_031111_p77 | hypothetical protein | phrog_439 | site-specific recombination directionality factor RDF | integration and excision | -1 | 49201 | 49500 |
| YP_009291309.1 | NC_031111_p70 | hypothetical protein | phrog_4604 | unknown function | unknown function | -1 | 46637 | 47098 |
| YP_009291293.1 | NC_031111_p54 | DNA primase | phrog_360 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 39724 | 40239 |
| YP_009291301.1 | NC_031111_p62 | hypothetical protein | phrog_1941 | unknown function | unknown function | -1 | 42881 | 43159 |
| YP_009291279.1 | NC_031111_p40 | hypothetical protein | phrog_15070 | unknown function | unknown function | -1 | 32441 | 32539 |
| YP_009291297.1 | NC_031111_p58 | DNA methylase | phrog_67 | DNA methyltransferase | other | -1 | 40607 | 41983 |
| YP_009291321.1 | NC_031111_p82 | hypothetical protein | phrog_861 | site-specific recombination directionality factor RDF | integration and excision | -1 | 50270 | 50440 |
| YP_009291308.1 | NC_031111_p69 | transposase | phrog_4285 | transposase | integration and excision | -1 | 45587 | 46297 |
| YP_009291326.1 | NC_031111_p87 | DNA methylase | singleton | unknown function | unknown function | -1 | 51758 | 52042 |
| YP_009291263.1 | NC_031111_p24 | tapemeasure protein | phrog_305 | tail length tape measure protein | tail | 1 | 16850 | 19330 |
| YP_009291287.1 | NC_031111_p48 | hypothetical protein | phrog_354 | sigma-K factor | transcription regulation | -1 | 36148 | 36933 |
| YP_009291274.1 | NC_031111_p35 | hypothetical protein | phrog_754 | minor tail protein | tail | 1 | 28524 | 29327 |
| YP_009291313.1 | NC_031111_p74 | hypothetical protein | phrog_3851 | unknown function | unknown function | -1 | 47703 | 47993 |
| YP_009291317.1 | NC_031111_p78 | hypothetical protein | phrog_1720 | unknown function | unknown function | -1 | 49497 | 49766 |
| YP_009291254.1 | NC_031111_p15 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 11794 | 12813 |
| YP_009291292.1 | NC_031111_p53 | DNA primase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 39357 | 39878 |
| YP_009291252.1 | NC_031111_p13 | capsid maturation protease | phrog_193 | head maturation protease | head and packaging | 1 | 10331 | 11212 |
| YP_009291291.1 | NC_031111_p52 | hypothetical protein | phrog_474 | phosphofructokinase | other | -1 | 38962 | 39360 |
| YP_009291284.1 | NC_031111_p45 | hypothetical protein | phrog_1781 | unknown function | unknown function | -1 | 35220 | 35450 |
| YP_009291324.1 | NC_031111_p85 | hypothetical protein | phrog_932 | unknown function | unknown function | -1 | 51136 | 51285 |
| YP_009291282.1 | NC_031111_p43 | hypothetical protein | phrog_383 | unknown function | unknown function | -1 | 32975 | 33352 |
| YP_009291315.1 | NC_031111_p76 | immunity repressor | phrog_357 | transcriptional repressor | transcription regulation | -1 | 48427 | 48939 |
| YP_009291243.1 | NC_031111_p4 | hypothetical protein | phrog_20136 | unknown function | unknown function | 1 | 1896 | 2147 |
| YP_009291276.1 | NC_031111_p37 | integrase | phrog_95 | integrase | integration and excision | 1 | 29884 | 31383 |
| YP_009291247.1 | NC_031111_p8 | hypothetical protein | phrog_747 | unknown function | unknown function | 1 | 4539 | 4796 |
| YP_009291253.1 | NC_031111_p14 | scaffolding protein | phrog_233 | head scaffolding protein | head and packaging | 1 | 11271 | 11783 |
| YP_009291280.1 | NC_031111_p41 | hypothetical protein | phrog_1860 | unknown function | unknown function | -1 | 32608 | 32703 |
| YP_009291289.1 | NC_031111_p50 | phosphoesterase | phrog_221 | metallo-phosphoesterase | other | -1 | 37071 | 38789 |
| YP_009291246.1 | NC_031111_p7 | hypothetical protein | phrog_1718 | tail protein | tail | 1 | 4271 | 4531 |
| YP_009291296.1 | NC_031111_p57 | hypothetical protein | phrog_397 | unknown function | unknown function | -1 | 40447 | 40581 |
| YP_009291325.1 | NC_031111_p86 | hypothetical protein | phrog_14636 | unknown function | unknown function | -1 | 51286 | 51456 |
| YP_009291312.1 | NC_031111_p73 | hypothetical protein | phrog_1584 | unknown function | unknown function | -1 | 47365 | 47682 |
| YP_009291302.1 | NC_031111_p63 | dsDNA helicase | phrog_243 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | -1 | 43159 | 43980 |
| YP_009291290.1 | NC_031111_p51 | hypothetical protein | phrog_1503 | unknown function | unknown function | -1 | 38786 | 38965 |
| YP_009291267.1 | NC_031111_p28 | minor tail protein | phrog_352 | minor tail protein | tail | 1 | 23430 | 23876 |
| YP_009291278.1 | NC_031111_p39 | hypothetical protein | phrog_28124 | unknown function | unknown function | -1 | 31773 | 32441 |
| YP_009291249.1 | NC_031111_p10 | lysin B | phrog_102 | endolysin | lysis | 1 | 6219 | 7187 |
| YP_009291256.1 | NC_031111_p17 | head-to-tail connector protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 13410 | 13859 |
| YP_009291248.1 | NC_031111_p9 | lysin A | phrog_317 | endolysin | lysis | 1 | 4796 | 6229 |
| YP_009291251.1 | NC_031111_p12 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 8892 | 10334 |
| YP_009291275.1 | NC_031111_p36 | hypothetical protein | phrog_411 | unknown function | unknown function | 1 | 29448 | 29732 |
| YP_009291303.1 | NC_031111_p64 | hypothetical protein | phrog_2507 | unknown function | unknown function | -1 | 43980 | 44153 |
| YP_009291328.1 | NC_031111_p89 | hypothetical protein | phrog_5419 | unknown function | unknown function | -1 | 52236 | 52487 |
| YP_009291240.1 | NC_031111_p1 | hypothetical protein | phrog_13643 | helicase | DNA, RNA and nucleotide metabolism | 1 | 602 | 838 |
| YP_009291298.1 | NC_031111_p59 | hndonuclease VII | phrog_307 | endonuclease VII | DNA, RNA and nucleotide metabolism | -1 | 41980 | 42474 |
| YP_009291241.1 | NC_031111_p2 | HNH endonuclease | phrog_333 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 835 | 1131 |
| YP_009291329.1 | NC_031111_p90 | hypothetical protein | phrog_828 | unknown function | unknown function | -1 | 52620 | 52910 |
| YP_009291285.1 | NC_031111_p46 | hypothetical protein | phrog_364 | ribonucleoside reductase class II | DNA, RNA and nucleotide metabolism | -1 | 35481 | 35972 |
| YP_009291310.1 | NC_031111_p71 | hypothetical protein | phrog_6068 | unknown function | unknown function | -1 | 47095 | 47208 |