| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_031112 |
Definition |
Gordonia phage Phinally, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
59265 |
Host Name |
Gordonia terrae |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
87 |
%GC |
68.43 |
Number of singletons |
23 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009291336.1 | NC_031112_p6 | hypothetical protein | singleton | unknown function | unknown function | 1 | 4344 | 5129 |
| YP_009291409.1 | NC_031112_p79 | exonuclease | phrog_192 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 55608 | 56306 |
| YP_009291416.1 | NC_031112_p86 | hypothetical protein | phrog_597 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 58578 | 58829 |
| YP_009291373.1 | NC_031112_p43 | hypothetical protein | phrog_10261 | membrane protein | moron, auxiliary metabolic gene and host takeover | 1 | 38601 | 39059 |
| YP_009291348.1 | NC_031112_p18 | hypothetical protein | phrog_18402 | head maturation protease | head and packaging | 1 | 12130 | 14892 |
| YP_009291351.1 | NC_031112_p21 | major capsid protein | phrog_777 | major head protein | head and packaging | 1 | 15336 | 17255 |
| YP_009291380.1 | NC_031112_p50 | hypothetical protein | phrog_14395 | unknown function | unknown function | 1 | 43080 | 43538 |
| YP_009291368.1 | NC_031112_p38 | hypothetical protein | phrog_8780 | minor tail protein | tail | 1 | 33216 | 35444 |
| YP_009291397.1 | NC_031112_p67 | hypothetical protein | singleton | unknown function | unknown function | 1 | 50828 | 51400 |
| YP_009291390.1 | NC_031112_p60 | hypothetical protein | singleton | unknown function | unknown function | 1 | 48149 | 48589 |
| YP_009291339.1 | NC_031112_p9 | hypothetical protein | phrog_21387 | unknown function | unknown function | 1 | 5687 | 5851 |
| YP_009291376.1 | NC_031112_p46 | hypothetical protein | phrog_5984 | unknown function | unknown function | 1 | 40330 | 40587 |
| YP_009291334.1 | NC_031112_p4 | hypothetical protein | singleton | unknown function | unknown function | 1 | 2543 | 2788 |
| YP_009291393.1 | NC_031112_p63 | hypothetical protein | singleton | unknown function | unknown function | 1 | 49311 | 49613 |
| YP_009291363.1 | NC_031112_p33 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 29134 | 30759 |
| YP_009291394.1 | NC_031112_p64 | hypothetical protein | phrog_159 | RuvC-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 49613 | 50260 |
| YP_009291401.1 | NC_031112_p71 | hypothetical protein | singleton | unknown function | unknown function | 1 | 53335 | 53517 |
| YP_009291331.1 | NC_031112_p1 | hypothetical protein | phrog_645 | Rnase E | DNA, RNA and nucleotide metabolism | 1 | 1 | 537 |
| YP_009291396.1 | NC_031112_p66 | hypothetical protein | phrog_23633 | unknown function | unknown function | 1 | 50619 | 50831 |
| YP_009291360.1 | NC_031112_p30 | hypothetical protein | phrog_13927 | unknown function | unknown function | 1 | 22538 | 23212 |
| YP_009291338.1 | NC_031112_p8 | hypothetical protein | singleton | unknown function | unknown function | 1 | 5485 | 5646 |
| YP_009291357.1 | NC_031112_p27 | hypothetical protein | phrog_901 | unknown function | unknown function | 1 | 20973 | 21419 |
| YP_009291343.1 | NC_031112_p13 | portal protein | phrog_776 | portal protein | head and packaging | 1 | 7070 | 8704 |
| YP_009291372.1 | NC_031112_p42 | hypothetical protein | phrog_11800 | membrane protein | moron, auxiliary metabolic gene and host takeover | 1 | 38326 | 38604 |
| YP_009291344.1 | NC_031112_p14 | hypothetical protein | phrog_14528 | unknown function | unknown function | 1 | 8708 | 9070 |
| YP_009291388.1 | NC_031112_p58 | hypothetical protein | phrog_26886 | unknown function | unknown function | 1 | 47579 | 47944 |
| YP_009291411.1 | NC_031112_p81 | hypothetical protein | phrog_17380 | unknown function | unknown function | 1 | 56491 | 56760 |
| YP_009291366.1 | NC_031112_p36 | hypothetical protein | phrog_24626 | unknown function | unknown function | 1 | 32592 | 32864 |
| YP_009291356.1 | NC_031112_p26 | hypothetical protein | phrog_810 | unknown function | unknown function | 1 | 20422 | 20976 |
| YP_009291382.1 | NC_031112_p52 | hypothetical protein | phrog_2447 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 43946 | 44797 |
| YP_009291402.1 | NC_031112_p72 | hypothetical protein | phrog_30480 | unknown function | unknown function | 1 | 53514 | 53801 |
| YP_009291392.1 | NC_031112_p62 | hypothetical protein | singleton | unknown function | unknown function | 1 | 49130 | 49276 |
| YP_009291364.1 | NC_031112_p34 | hypothetical protein | phrog_32570 | unknown function | unknown function | 1 | 30797 | 31507 |
| YP_009291354.1 | NC_031112_p24 | major tail protein | phrog_792 | major tail protein | tail | 1 | 18791 | 19477 |
| YP_009291365.1 | NC_031112_p35 | hypothetical protein | phrog_7719 | minor tail protein | tail | 1 | 31507 | 32595 |
| YP_009291385.1 | NC_031112_p55 | hypothetical protein | phrog_19496 | unknown function | unknown function | 1 | 46130 | 46309 |
| YP_009291417.1 | NC_031112_p87 | hypothetical protein | singleton | unknown function | unknown function | 1 | 58826 | 59044 |
| YP_009291389.1 | NC_031112_p59 | hypothetical protein | singleton | unknown function | unknown function | 1 | 47941 | 48156 |
| YP_009291407.1 | NC_031112_p77 | hypothetical protein | singleton | unknown function | unknown function | 1 | 54830 | 55372 |
| YP_009291335.1 | NC_031112_p5 | DNA methylase | phrog_116 | DNA methyltransferase | other | 1 | 2785 | 4341 |
| YP_009291358.1 | NC_031112_p28 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 21403 | 21834 |
| YP_009291400.1 | NC_031112_p70 | hypothetical protein | singleton | unknown function | unknown function | 1 | 53063 | 53335 |
| YP_009291374.1 | NC_031112_p44 | hypothetical protein | phrog_102 | endolysin | lysis | 1 | 39060 | 39779 |
| YP_009291375.1 | NC_031112_p45 | hypothetical protein | phrog_17370 | unknown function | unknown function | 1 | 39800 | 40333 |
| YP_009291404.1 | NC_031112_p74 | polynucleotide kinase | phrog_415 | polynucleotide kinase | other | 1 | 53979 | 54530 |
| YP_009291415.1 | NC_031112_p85 | hypothetical protein | singleton | unknown function | unknown function | 1 | 57963 | 58520 |
| YP_009291414.1 | NC_031112_p84 | hypothetical protein | singleton | unknown function | unknown function | 1 | 57508 | 57966 |
| YP_009291342.1 | NC_031112_p12 | hypothetical protein | phrog_781 | unknown function | unknown function | 1 | 6670 | 7056 |
| YP_009291346.1 | NC_031112_p16 | hypothetical protein | phrog_17748 | unknown function | unknown function | 1 | 11388 | 11591 |
| YP_009291370.1 | NC_031112_p40 | lysin A | phrog_2998 | endolysin | lysis | 1 | 36140 | 37753 |
| YP_009291371.1 | NC_031112_p41 | membrane protein | phrog_443 | holin | lysis | 1 | 37767 | 38264 |
| YP_009291403.1 | NC_031112_p73 | hypothetical protein | singleton | unknown function | unknown function | 1 | 53788 | 53982 |
| YP_009291341.1 | NC_031112_p11 | hypothetical protein | phrog_5392 | unknown function | unknown function | 1 | 6312 | 6632 |
| YP_009291379.1 | NC_031112_p49 | ssDNA binding protein | phrog_148 | RecT-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 41997 | 43058 |
| YP_009291337.1 | NC_031112_p7 | hypothetical protein | phrog_8105 | unknown function | unknown function | 1 | 5126 | 5485 |
| YP_009291406.1 | NC_031112_p76 | hypothetical protein | phrog_4852 | unknown function | unknown function | 1 | 54651 | 54857 |
| YP_009291410.1 | NC_031112_p80 | hypothetical protein | phrog_23499 | unknown function | unknown function | 1 | 56303 | 56494 |
| YP_009291408.1 | NC_031112_p78 | hypothetical protein | phrog_9642 | unknown function | unknown function | 1 | 55372 | 55611 |
| YP_009291383.1 | NC_031112_p53 | hypothetical protein | singleton | unknown function | unknown function | 1 | 44794 | 45045 |
| YP_009291398.1 | NC_031112_p68 | hypothetical protein | singleton | unknown function | unknown function | 1 | 51440 | 52498 |
| YP_009291355.1 | NC_031112_p25 | hypothetical protein | phrog_783 | head-tail adaptor | connector | 1 | 19634 | 20425 |
| YP_009291332.1 | NC_031112_p2 | terminase | phrog_38 | terminase large subunit | head and packaging | 1 | 534 | 2189 |
| YP_009291387.1 | NC_031112_p57 | hypothetical protein | phrog_21374 | unknown function | unknown function | 1 | 46695 | 47585 |
| YP_009291399.1 | NC_031112_p69 | hypothetical protein | phrog_17794 | unknown function | unknown function | 1 | 52584 | 53066 |
| YP_009291333.1 | NC_031112_p3 | hypothetical protein | singleton | unknown function | unknown function | 1 | 2246 | 2515 |
| YP_009291405.1 | NC_031112_p75 | hypothetical protein | singleton | unknown function | unknown function | 1 | 54527 | 54670 |
| YP_009291391.1 | NC_031112_p61 | DNA methyltransferase | phrog_111 | DNA methyltransferase | other | 1 | 48586 | 49137 |
| YP_009291367.1 | NC_031112_p37 | hypothetical protein | phrog_1126 | unknown function | unknown function | 1 | 32878 | 33219 |
| YP_009291381.1 | NC_031112_p51 | HTH DNA-binding protein | singleton | unknown function | unknown function | 1 | 43513 | 43935 |
| YP_009291412.1 | NC_031112_p82 | hypothetical protein | singleton | unknown function | unknown function | 1 | 56757 | 57122 |
| YP_009291413.1 | NC_031112_p83 | hypothetical protein | phrog_17681 | unknown function | unknown function | 1 | 57119 | 57511 |
| YP_009291362.1 | NC_031112_p32 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 28148 | 29134 |
| YP_009291345.1 | NC_031112_p15 | hypothetical protein | phrog_18477 | head morphogenesis | head and packaging | 1 | 9070 | 11391 |
| YP_009291359.1 | NC_031112_p29 | hypothetical protein | phrog_14331 | unknown function | unknown function | 1 | 21947 | 22531 |
| YP_009291378.1 | NC_031112_p48 | hypothetical protein | phrog_16141 | unknown function | unknown function | 1 | 41735 | 42004 |
| YP_009291347.1 | NC_031112_p17 | hypothetical protein | phrog_21901 | unknown function | unknown function | 1 | 11584 | 11808 |
| YP_009291361.1 | NC_031112_p31 | tape measure protein | phrog_6090 | tail length tape measure protein | tail | 1 | 23257 | 28146 |
| YP_009291353.1 | NC_031112_p23 | hypothetical protein | phrog_14463 | unknown function | unknown function | 1 | 18197 | 18691 |
| YP_009291369.1 | NC_031112_p39 | hypothetical protein | phrog_7114 | minor tail protein | tail | 1 | 35444 | 36040 |
| YP_009291352.1 | NC_031112_p22 | hypothetical protein | phrog_779 | unknown function | unknown function | 1 | 17352 | 18182 |
| YP_009291395.1 | NC_031112_p65 | hypothetical protein | phrog_16850 | unknown function | unknown function | 1 | 50254 | 50622 |
| YP_009291386.1 | NC_031112_p56 | hypothetical protein | phrog_16769 | unknown function | unknown function | 1 | 46306 | 46698 |
| YP_009291350.1 | NC_031112_p20 | hypothetical protein | phrog_14225 | unknown function | unknown function | 1 | 15079 | 15225 |
| YP_009291340.1 | NC_031112_p10 | hypothetical protein | phrog_33706 | unknown function | unknown function | 1 | 5859 | 6257 |
| YP_009291377.1 | NC_031112_p47 | exonuclease | phrog_434 | RecE-like recombination exonuclease | DNA, RNA and nucleotide metabolism | 1 | 40584 | 41738 |
| YP_009291349.1 | NC_031112_p19 | hypothetical protein | singleton | unknown function | unknown function | 1 | 14897 | 15079 |
| YP_009291384.1 | NC_031112_p54 | hypothetical protein | singleton | unknown function | unknown function | 1 | 45108 | 46133 |