| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_031118 |
Definition |
Gordonia phage CarolAnn, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
54167 |
Host Name |
Gordonia terrae |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
80 |
%GC |
66.9 |
Number of singletons |
9 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009291980.1 | NC_031118_p25 | hypothetical protein | phrog_3798 | unknown function | unknown function | 1 | 20904 | 21254 |
| YP_009291992.1 | NC_031118_p37 | hypothetical protein | phrog_6153 | unknown function | unknown function | -1 | 31222 | 31464 |
| YP_009291997.1 | NC_031118_p42 | hypothetical protein | phrog_87 | metallo-protease | other | -1 | 34975 | 35400 |
| YP_009292034.1 | NC_031118_p79 | hypothetical protein | singleton | unknown function | unknown function | -1 | 52817 | 53410 |
| YP_009292035.1 | NC_031118_p80 | HNH endonuclease | phrog_1808 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 53715 | 54083 |
| YP_009292014.1 | NC_031118_p59 | exonuclease | phrog_434 | RecE-like recombination exonuclease | DNA, RNA and nucleotide metabolism | 1 | 42430 | 43359 |
| YP_009292019.1 | NC_031118_p64 | hypothetical protein | phrog_33336 | unknown function | unknown function | 1 | 45442 | 45852 |
| YP_009291998.1 | NC_031118_p43 | hypothetical protein | phrog_38328 | unknown function | unknown function | -1 | 35464 | 36000 |
| YP_009291971.1 | NC_031118_p16 | tail assembly chaperone | phrog_5010 | tail assembly chaperone | tail | 1 | 9318 | 9728 |
| YP_009291984.1 | NC_031118_p29 | minor tail protein | phrog_737 | minor tail protein | tail | 1 | 23476 | 24993 |
| YP_009291993.1 | NC_031118_p38 | hypothetical protein | singleton | unknown function | unknown function | -1 | 31878 | 32348 |
| YP_009292008.1 | NC_031118_p53 | hypothetical protein | phrog_19919 | unknown function | unknown function | 1 | 40474 | 40893 |
| YP_009291969.1 | NC_031118_p14 | major tail protein | phrog_117 | major tail protein | tail | 1 | 8578 | 9216 |
| YP_009292025.1 | NC_031118_p70 | hypothetical protein | phrog_10260 | unknown function | unknown function | 1 | 48215 | 48370 |
| YP_009292031.1 | NC_031118_p76 | resolvase | phrog_159 | RuvC-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 51274 | 51864 |
| YP_009291996.1 | NC_031118_p41 | hypothetical protein | phrog_5316 | unknown function | unknown function | -1 | 34769 | 34978 |
| YP_009292000.1 | NC_031118_p45 | immunity repressor | phrog_8 | transcriptional regulator | transcription regulation | -1 | 37087 | 37797 |
| YP_009292001.1 | NC_031118_p46 | HTH DNA binding domain protein | phrog_3 | transcriptional repressor | transcription regulation | 1 | 38066 | 38320 |
| YP_009291957.1 | NC_031118_p2 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 333 | 1958 |
| YP_009292009.1 | NC_031118_p54 | hypothetical protein | phrog_5984 | unknown function | unknown function | 1 | 40890 | 41225 |
| YP_009291956.1 | NC_031118_p1 | terminase small subunit | phrog_1496 | terminase small subunit | head and packaging | 1 | 56 | 391 |
| YP_009291963.1 | NC_031118_p8 | head-to-tail connector protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 6466 | 6858 |
| YP_009292023.1 | NC_031118_p68 | methylase | phrog_116 | DNA methyltransferase | other | 1 | 46387 | 47964 |
| YP_009292024.1 | NC_031118_p69 | hypothetical protein | singleton | unknown function | unknown function | 1 | 47961 | 48218 |
| YP_009291982.1 | NC_031118_p27 | hypothetical protein | phrog_9406 | unknown function | unknown function | 1 | 22042 | 22416 |
| YP_009292007.1 | NC_031118_p52 | hypothetical protein | phrog_11014 | unknown function | unknown function | 1 | 40109 | 40477 |
| YP_009291977.1 | NC_031118_p22 | holin | phrog_443 | holin | lysis | 1 | 19901 | 20353 |
| YP_009291962.1 | NC_031118_p7 | hypothetical protein | phrog_2322 | head-tail connector protein | connector | 1 | 5969 | 6469 |
| YP_009291994.1 | NC_031118_p39 | hypothetical protein | phrog_12638 | unknown function | unknown function | -1 | 32371 | 33240 |
| YP_009291961.1 | NC_031118_p6 | major capsid protein | phrog_1650 | major head protein | head and packaging | 1 | 5043 | 5972 |
| YP_009291964.1 | NC_031118_p9 | head-to-tail connector protein | phrog_501 | head closure Hc1 | connector | 1 | 6858 | 7220 |
| YP_009292021.1 | NC_031118_p66 | hypothetical protein | singleton | unknown function | unknown function | 1 | 46032 | 46280 |
| YP_009292027.1 | NC_031118_p72 | hypothetical protein | phrog_2857 | tail fiber protein | tail | 1 | 49445 | 49741 |
| YP_009292029.1 | NC_031118_p74 | hypothetical protein | phrog_27386 | unknown function | unknown function | 1 | 50025 | 50186 |
| YP_009292002.1 | NC_031118_p47 | hypothetical protein | phrog_15107 | unknown function | unknown function | 1 | 38317 | 38493 |
| YP_009291981.1 | NC_031118_p26 | lysin B | phrog_102 | endolysin | lysis | 1 | 21251 | 22045 |
| YP_009292006.1 | NC_031118_p51 | hypothetical protein | phrog_9909 | unknown function | unknown function | 1 | 39810 | 40112 |
| YP_009292015.1 | NC_031118_p60 | ssDNA binding protein | phrog_2780 | RecT-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 43356 | 44465 |
| YP_009292017.1 | NC_031118_p62 | hypothetical protein | phrog_12075 | membrane protein | moron, auxiliary metabolic gene and host takeover | 1 | 44743 | 44952 |
| YP_009291978.1 | NC_031118_p23 | membrane protein | phrog_4511 | unknown function | unknown function | 1 | 20353 | 20676 |
| YP_009291987.1 | NC_031118_p32 | hypothetical protein | phrog_21809 | unknown function | unknown function | 1 | 27486 | 28172 |
| YP_009292005.1 | NC_031118_p50 | hypothetical protein | phrog_9588 | unknown function | unknown function | 1 | 39493 | 39813 |
| YP_009291960.1 | NC_031118_p5 | scaffolding protein | phrog_673 | head scaffolding protein | head and packaging | 1 | 4629 | 5039 |
| YP_009292033.1 | NC_031118_p78 | HTH DNA binding protein | phrog_908 | unknown function | unknown function | 1 | 52043 | 52804 |
| YP_009291991.1 | NC_031118_p36 | hypothetical protein | singleton | unknown function | unknown function | -1 | 30232 | 31212 |
| YP_009292026.1 | NC_031118_p71 | hypothetical protein | phrog_3171 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 48360 | 49448 |
| YP_009292028.1 | NC_031118_p73 | hypothetical protein | phrog_16913 | unknown function | unknown function | 1 | 49738 | 50028 |
| YP_009291959.1 | NC_031118_p4 | capsid maturation protease | phrog_2976 | head maturation protease | head and packaging | 1 | 3352 | 4626 |
| YP_009291968.1 | NC_031118_p13 | head-to-tail connector protein | phrog_123 | tail terminator | connector | 1 | 8053 | 8472 |
| YP_009292003.1 | NC_031118_p48 | antirepressor | phrog_130 | anti-repressor Ant | transcription regulation | 1 | 38490 | 39251 |
| YP_009291988.1 | NC_031118_p33 | hypothetical protein | singleton | unknown function | unknown function | -1 | 28179 | 28949 |
| YP_009291972.1 | NC_031118_p17 | tape measure protein | phrog_4197 | tail length tape measure protein | tail | 1 | 10172 | 15763 |
| YP_009292022.1 | NC_031118_p67 | hypothetical protein | singleton | unknown function | unknown function | 1 | 46277 | 46390 |
| YP_009291989.1 | NC_031118_p34 | hypothetical protein | singleton | unknown function | unknown function | 1 | 29013 | 29315 |
| YP_009291970.1 | NC_031118_p15 | tail assembly chaperone | phrog_8183 | tail assembly chaperone | tail | 1 | 9318 | 10102 |
| YP_009291985.1 | NC_031118_p30 | hypothetical protein | phrog_8055 | unknown function | unknown function | 1 | 24993 | 25325 |
| YP_009291965.1 | NC_031118_p10 | hypothetical protein | phrog_16006 | unknown function | unknown function | 1 | 7229 | 7489 |
| YP_009292012.1 | NC_031118_p57 | hypothetical protein | phrog_6877 | unknown function | unknown function | 1 | 41718 | 42080 |
| YP_009291973.1 | NC_031118_p18 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 15760 | 16620 |
| YP_009292013.1 | NC_031118_p58 | hypothetical protein | phrog_572 | unknown function | unknown function | 1 | 42080 | 42433 |
| YP_009291974.1 | NC_031118_p19 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 16617 | 18263 |
| YP_009292010.1 | NC_031118_p55 | hypothetical protein | phrog_9981 | unknown function | unknown function | 1 | 41222 | 41410 |
| YP_009291999.1 | NC_031118_p44 | hypothetical protein | phrog_36224 | unknown function | unknown function | -1 | 35975 | 37087 |
| YP_009291995.1 | NC_031118_p40 | integrase | phrog_95 | integrase | integration and excision | 1 | 33367 | 34767 |
| YP_009291990.1 | NC_031118_p35 | hypothetical protein | singleton | unknown function | unknown function | -1 | 29361 | 30113 |
| YP_009291976.1 | NC_031118_p21 | lysin A, glycosyl hydrolase domain | phrog_3084 | endolysin | lysis | 1 | 18987 | 19898 |
| YP_009291967.1 | NC_031118_p12 | head-to-tail connector protein | phrog_5837 | head closure Hc1 | connector | 1 | 7769 | 8056 |
| YP_009291979.1 | NC_031118_p24 | membrane protein | phrog_37077 | unknown function | unknown function | 1 | 20673 | 20903 |
| YP_009292011.1 | NC_031118_p56 | hypothetical protein | phrog_1622 | unknown function | unknown function | 1 | 41407 | 41721 |
| YP_009291975.1 | NC_031118_p20 | lysin A, L-Ala-D-Glu peptidase domain | phrog_1512 | endolysin | lysis | 1 | 18280 | 18987 |
| YP_009292016.1 | NC_031118_p61 | hypothetical protein | phrog_8105 | unknown function | unknown function | 1 | 44462 | 44746 |
| YP_009291958.1 | NC_031118_p3 | portal protein | phrog_113 | portal protein | head and packaging | 1 | 1973 | 3340 |
| YP_009292032.1 | NC_031118_p77 | hypothetical protein | phrog_12987 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 51861 | 52046 |
| YP_009292004.1 | NC_031118_p49 | hypothetical protein | phrog_8218 | unknown function | unknown function | 1 | 39329 | 39496 |
| YP_009291983.1 | NC_031118_p28 | minor tail protein | phrog_4120 | minor tail protein | tail | 1 | 22409 | 23476 |
| YP_009292030.1 | NC_031118_p75 | hypothetical protein | phrog_11256 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 50183 | 51277 |
| YP_009292020.1 | NC_031118_p65 | hypothetical protein | phrog_10784 | membrane protein | moron, auxiliary metabolic gene and host takeover | 1 | 45856 | 46035 |
| YP_009292018.1 | NC_031118_p63 | hypothetical protein | phrog_8336 | unknown function | unknown function | 1 | 44936 | 45442 |
| YP_009291986.1 | NC_031118_p31 | minor tail protein | phrog_11419 | tail fiber protein | tail | 1 | 25318 | 27486 |
| YP_009291966.1 | NC_031118_p11 | head-to-tail connector protein | phrog_9658 | head-tail connector protein | connector | 1 | 7486 | 7776 |