Genomic map of Citrobacter phage SH3 (NC_031123)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_031123
Definition
Citrobacter phage SH3, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Studiervirinae; Kayfunavirus; Citrobacter virus SH3.
DB of origin
REFSEQ
Length
39444
Host Name
Citrobacter freundii
Host domain
Bacteria
Is prophage?
undef
Number of proteins
49
%GC
50.64
Number of singletons
3
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009292468.1 NC_031123_p3 hypothetical protein phrog_5058 unknown function unknown function 1 1459 1614
YP_009292490.1 NC_031123_p25 hypothetical protein phrog_18700 unknown function unknown function 1 13118 13648
YP_009292482.1 NC_031123_p17 helix-destabilizing protein phrog_112 Gp2.5-like ssDNA binding protein and ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 9242 9940
YP_009292475.1 NC_031123_p10 hypothetical protein phrog_4383 unknown function unknown function 1 6561 6740
YP_009292501.1 NC_031123_p36 major capsid protein phrog_267 major head protein head and packaging 1 21687 22730
YP_009292471.1 NC_031123_p6 hypothetical protein phrog_7066 unknown function unknown function 1 2518 2910
YP_009292485.1 NC_031123_p20 n-acetylmuramoyl-l-alanine amidase phrog_822 amidase lysis 1 10606 11064
YP_009292479.1 NC_031123_p14 hypothetical protein phrog_2585 nucleotide kinase other 1 8521 8850
YP_009292489.1 NC_031123_p24 hypothetical protein phrog_5140 unknown function unknown function 1 12801 13121
YP_009292493.1 NC_031123_p28 hypothetical protein phrog_1452 Gp5.5-like host HNS inhibition moron, auxiliary metabolic gene and host takeover 1 16208 16492
YP_009292480.1 NC_031123_p15 hypothetical protein phrog_29660 unknown function unknown function 1 8843 8947
YP_009292503.1 NC_031123_p38 tail tubular protein B phrog_457 tail protein tail 1 23503 25872
YP_009292511.1 NC_031123_p46 endopeptidase Rz phrog_1327 Rz-like spanin lysis 1 36358 36807
YP_009292477.1 NC_031123_p12 DNA ligase phrog_114 ATP-dependent DNA ligase DNA, RNA and nucleotide metabolism 1 7008 8135
YP_009292494.1 NC_031123_p29 HNS binding protein phrog_1334 unknown function unknown function 1 16489 16698
YP_009292507.1 NC_031123_p42 internal virion protein D phrog_342 internal virion protein with endolysin domain head and packaging 1 29290 33177
YP_009292510.1 NC_031123_p45 DNA packaging protein phrog_1351 terminase small subunit head and packaging 1 35984 36247
YP_009292502.1 NC_031123_p37 tail tubular protein A phrog_446 tail protein tail 1 22925 23491
YP_009292514.1 NC_031123_p49 hypothetical protein phrog_2193 unknown function unknown function 1 38865 39023
YP_009292476.1 NC_031123_p11 deoxyguanosine triphospho-hydrolase inhibitor phrog_2949 dGTPase inhibitor; target for F exclusion other 1 6745 7008
YP_009292481.1 NC_031123_p16 bacterial RNA polymerase inhibitor phrog_1307 RNA polymerase inhibitor DNA, RNA and nucleotide metabolism 1 9026 9184
YP_009292473.1 NC_031123_p8 hypothetical protein phrog_8082 unknown function unknown function 1 5702 5917
YP_009292496.1 NC_031123_p31 hypothetical protein phrog_1447 unknown function unknown function 1 17772 18044
YP_009292506.1 NC_031123_p41 internal virion protein C phrog_1339 internal virion protein head and packaging 1 27003 29285
YP_009292467.1 NC_031123_p2 antirestriction protein phrog_2568 ocr-like anti-restriction moron, auxiliary metabolic gene and host takeover 1 950 1459
YP_009292497.1 NC_031123_p32 hypothetical protein phrog_1391 unknown function unknown function 1 18059 18283
YP_009292508.1 NC_031123_p43 tail fibers protein phrog_8460 tail fiber protein tail 1 33243 35747
YP_009292512.1 NC_031123_p47 hypothetical protein phrog_4306 Rz-like spanin lysis 1 36458 36733
YP_009292509.1 NC_031123_p44 lysis protein phrog_920 holin lysis 1 35793 35987
YP_009292491.1 NC_031123_p26 DNA polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 13724 15895
YP_009292484.1 NC_031123_p19 hypothetical protein phrog_15211 unknown function unknown function 1 10392 10616
YP_009292488.1 NC_031123_p23 primase/helicase phrog_239 DNA primase/helicase DNA, RNA and nucleotide metabolism 1 11474 13072
YP_009292474.1 NC_031123_p9 hypothetical protein singleton unknown function unknown function 1 5996 6208
YP_009292498.1 NC_031123_p33 hypothetical protein phrog_2746 host range and adsorption protein moron, auxiliary metabolic gene and host takeover 1 18288 18710
YP_009292486.1 NC_031123_p21 hypothetical protein phrog_1950 unknown function unknown function 1 11088 11303
YP_009292499.1 NC_031123_p34 head-to-tail connector protein phrog_449 head-tail adaptor connector 1 18963 20531
YP_009292504.1 NC_031123_p39 internal virion protein A phrog_308 internal virion protein head and packaging 1 25949 26419
YP_009292487.1 NC_031123_p22 primase/helicase phrog_239 DNA primase/helicase DNA, RNA and nucleotide metabolism 1 11372 13072
YP_009292466.1 NC_031123_p1 hypothetical protein singleton unknown function unknown function 1 358 498
YP_009292492.1 NC_031123_p27 hypothetical protein phrog_1872 endonuclease DNA, RNA and nucleotide metabolism 1 15993 16208
YP_009292478.1 NC_031123_p13 hypothetical protein phrog_1777 unknown function unknown function 1 8268 8528
YP_009292513.1 NC_031123_p48 maturation protein phrog_38 terminase large subunit head and packaging 1 36837 38567
YP_009292470.1 NC_031123_p5 hypothetical protein phrog_2385 unknown function unknown function 1 2321 2518
YP_009292469.1 NC_031123_p4 hypothetical protein singleton unknown function unknown function 1 1813 2160
YP_009292505.1 NC_031123_p40 internal virion protein B phrog_805 internal virion protein head and packaging 1 26404 26991
YP_009292483.1 NC_031123_p18 endonuclease phrog_945 endonuclease DNA, RNA and nucleotide metabolism 1 9940 10392
YP_009292495.1 NC_031123_p30 exonuclease phrog_107 exonuclease DNA, RNA and nucleotide metabolism 1 16752 17561
YP_009292472.1 NC_031123_p7 RNA polymerase phrog_414 RNA polymerase DNA, RNA and nucleotide metabolism 1 3008 5689
YP_009292500.1 NC_031123_p35 capsid assembly protein phrog_1052 head assembly head and packaging 1 20676 21560