| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_031123 |
Definition |
Citrobacter phage SH3, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Studiervirinae; Kayfunavirus; Citrobacter virus SH3. |
DB of origin |
REFSEQ |
Length |
39444 |
Host Name |
Citrobacter freundii |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
49 |
%GC |
50.64 |
Number of singletons |
3 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009292468.1 | NC_031123_p3 | hypothetical protein | phrog_5058 | unknown function | unknown function | 1 | 1459 | 1614 |
| YP_009292490.1 | NC_031123_p25 | hypothetical protein | phrog_18700 | unknown function | unknown function | 1 | 13118 | 13648 |
| YP_009292482.1 | NC_031123_p17 | helix-destabilizing protein | phrog_112 | Gp2.5-like ssDNA binding protein and ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 9242 | 9940 |
| YP_009292475.1 | NC_031123_p10 | hypothetical protein | phrog_4383 | unknown function | unknown function | 1 | 6561 | 6740 |
| YP_009292501.1 | NC_031123_p36 | major capsid protein | phrog_267 | major head protein | head and packaging | 1 | 21687 | 22730 |
| YP_009292471.1 | NC_031123_p6 | hypothetical protein | phrog_7066 | unknown function | unknown function | 1 | 2518 | 2910 |
| YP_009292485.1 | NC_031123_p20 | n-acetylmuramoyl-l-alanine amidase | phrog_822 | amidase | lysis | 1 | 10606 | 11064 |
| YP_009292479.1 | NC_031123_p14 | hypothetical protein | phrog_2585 | nucleotide kinase | other | 1 | 8521 | 8850 |
| YP_009292489.1 | NC_031123_p24 | hypothetical protein | phrog_5140 | unknown function | unknown function | 1 | 12801 | 13121 |
| YP_009292493.1 | NC_031123_p28 | hypothetical protein | phrog_1452 | Gp5.5-like host HNS inhibition | moron, auxiliary metabolic gene and host takeover | 1 | 16208 | 16492 |
| YP_009292480.1 | NC_031123_p15 | hypothetical protein | phrog_29660 | unknown function | unknown function | 1 | 8843 | 8947 |
| YP_009292503.1 | NC_031123_p38 | tail tubular protein B | phrog_457 | tail protein | tail | 1 | 23503 | 25872 |
| YP_009292511.1 | NC_031123_p46 | endopeptidase Rz | phrog_1327 | Rz-like spanin | lysis | 1 | 36358 | 36807 |
| YP_009292477.1 | NC_031123_p12 | DNA ligase | phrog_114 | ATP-dependent DNA ligase | DNA, RNA and nucleotide metabolism | 1 | 7008 | 8135 |
| YP_009292494.1 | NC_031123_p29 | HNS binding protein | phrog_1334 | unknown function | unknown function | 1 | 16489 | 16698 |
| YP_009292507.1 | NC_031123_p42 | internal virion protein D | phrog_342 | internal virion protein with endolysin domain | head and packaging | 1 | 29290 | 33177 |
| YP_009292510.1 | NC_031123_p45 | DNA packaging protein | phrog_1351 | terminase small subunit | head and packaging | 1 | 35984 | 36247 |
| YP_009292502.1 | NC_031123_p37 | tail tubular protein A | phrog_446 | tail protein | tail | 1 | 22925 | 23491 |
| YP_009292514.1 | NC_031123_p49 | hypothetical protein | phrog_2193 | unknown function | unknown function | 1 | 38865 | 39023 |
| YP_009292476.1 | NC_031123_p11 | deoxyguanosine triphospho-hydrolase inhibitor | phrog_2949 | dGTPase inhibitor; target for F exclusion | other | 1 | 6745 | 7008 |
| YP_009292481.1 | NC_031123_p16 | bacterial RNA polymerase inhibitor | phrog_1307 | RNA polymerase inhibitor | DNA, RNA and nucleotide metabolism | 1 | 9026 | 9184 |
| YP_009292473.1 | NC_031123_p8 | hypothetical protein | phrog_8082 | unknown function | unknown function | 1 | 5702 | 5917 |
| YP_009292496.1 | NC_031123_p31 | hypothetical protein | phrog_1447 | unknown function | unknown function | 1 | 17772 | 18044 |
| YP_009292506.1 | NC_031123_p41 | internal virion protein C | phrog_1339 | internal virion protein | head and packaging | 1 | 27003 | 29285 |
| YP_009292467.1 | NC_031123_p2 | antirestriction protein | phrog_2568 | ocr-like anti-restriction | moron, auxiliary metabolic gene and host takeover | 1 | 950 | 1459 |
| YP_009292497.1 | NC_031123_p32 | hypothetical protein | phrog_1391 | unknown function | unknown function | 1 | 18059 | 18283 |
| YP_009292508.1 | NC_031123_p43 | tail fibers protein | phrog_8460 | tail fiber protein | tail | 1 | 33243 | 35747 |
| YP_009292512.1 | NC_031123_p47 | hypothetical protein | phrog_4306 | Rz-like spanin | lysis | 1 | 36458 | 36733 |
| YP_009292509.1 | NC_031123_p44 | lysis protein | phrog_920 | holin | lysis | 1 | 35793 | 35987 |
| YP_009292491.1 | NC_031123_p26 | DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 13724 | 15895 |
| YP_009292484.1 | NC_031123_p19 | hypothetical protein | phrog_15211 | unknown function | unknown function | 1 | 10392 | 10616 |
| YP_009292488.1 | NC_031123_p23 | primase/helicase | phrog_239 | DNA primase/helicase | DNA, RNA and nucleotide metabolism | 1 | 11474 | 13072 |
| YP_009292474.1 | NC_031123_p9 | hypothetical protein | singleton | unknown function | unknown function | 1 | 5996 | 6208 |
| YP_009292498.1 | NC_031123_p33 | hypothetical protein | phrog_2746 | host range and adsorption protein | moron, auxiliary metabolic gene and host takeover | 1 | 18288 | 18710 |
| YP_009292486.1 | NC_031123_p21 | hypothetical protein | phrog_1950 | unknown function | unknown function | 1 | 11088 | 11303 |
| YP_009292499.1 | NC_031123_p34 | head-to-tail connector protein | phrog_449 | head-tail adaptor | connector | 1 | 18963 | 20531 |
| YP_009292504.1 | NC_031123_p39 | internal virion protein A | phrog_308 | internal virion protein | head and packaging | 1 | 25949 | 26419 |
| YP_009292487.1 | NC_031123_p22 | primase/helicase | phrog_239 | DNA primase/helicase | DNA, RNA and nucleotide metabolism | 1 | 11372 | 13072 |
| YP_009292466.1 | NC_031123_p1 | hypothetical protein | singleton | unknown function | unknown function | 1 | 358 | 498 |
| YP_009292492.1 | NC_031123_p27 | hypothetical protein | phrog_1872 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 15993 | 16208 |
| YP_009292478.1 | NC_031123_p13 | hypothetical protein | phrog_1777 | unknown function | unknown function | 1 | 8268 | 8528 |
| YP_009292513.1 | NC_031123_p48 | maturation protein | phrog_38 | terminase large subunit | head and packaging | 1 | 36837 | 38567 |
| YP_009292470.1 | NC_031123_p5 | hypothetical protein | phrog_2385 | unknown function | unknown function | 1 | 2321 | 2518 |
| YP_009292469.1 | NC_031123_p4 | hypothetical protein | singleton | unknown function | unknown function | 1 | 1813 | 2160 |
| YP_009292505.1 | NC_031123_p40 | internal virion protein B | phrog_805 | internal virion protein | head and packaging | 1 | 26404 | 26991 |
| YP_009292483.1 | NC_031123_p18 | endonuclease | phrog_945 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 9940 | 10392 |
| YP_009292495.1 | NC_031123_p30 | exonuclease | phrog_107 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 16752 | 17561 |
| YP_009292472.1 | NC_031123_p7 | RNA polymerase | phrog_414 | RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 3008 | 5689 |
| YP_009292500.1 | NC_031123_p35 | capsid assembly protein | phrog_1052 | head assembly | head and packaging | 1 | 20676 | 21560 |