| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_031124 |
Definition |
Mycobacterium phage Gardann, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Bronvirus; unclassified Bronvirus. |
DB of origin |
REFSEQ |
Length |
76012 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
126 |
%GC |
58.9 |
Number of singletons |
1 |
Number of paralogs |
2 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009292541.1 | NC_031124_p27 | lysin A | phrog_1512 | endolysin | lysis | 1 | 25355 | 26305 |
| YP_009292584.1 | NC_031124_p70 | dsDNA helicase | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 47613 | 48878 |
| YP_009292613.1 | NC_031124_p99 | hypothetical protein | phrog_338 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 61505 | 61927 |
| YP_009292550.1 | NC_031124_p36 | Lsr2 DNA bridging protein | phrog_1223 | nucloid associated Lsr2-like | DNA, RNA and nucleotide metabolism | -1 | 30215 | 30676 |
| YP_009292546.1 | NC_031124_p32 | glutaredoxin | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | 1 | 28424 | 28690 |
| YP_009292592.1 | NC_031124_p78 | hypothetical protein | phrog_6064 | unknown function | unknown function | 1 | 53003 | 53236 |
| YP_009292531.1 | NC_031124_p17 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 16079 | 16993 |
| YP_009292640.1 | NC_031124_p126 | hypothetical protein | phrog_7398 | unknown function | unknown function | -1 | 74662 | 75171 |
| YP_009292549.1 | NC_031124_p35 | nucleotidyltransferase | phrog_388 | nucleotidyltransferase | DNA, RNA and nucleotide metabolism | -1 | 29382 | 30128 |
| YP_009292577.1 | NC_031124_p63 | ERF family ssDNA binding protein | phrog_155 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 44760 | 45515 |
| YP_009292517.1 | NC_031124_p3 | hypothetical protein | phrog_6976 | unknown function | unknown function | 1 | 866 | 1069 |
| YP_009292534.1 | NC_031124_p20 | minor tail protein | phrog_2689 | minor tail protein | tail | 1 | 19233 | 21029 |
| YP_009292603.1 | NC_031124_p89 | ClpP protease | phrog_94 | head maturation protease | head and packaging | 1 | 57496 | 58179 |
| YP_009292563.1 | NC_031124_p49 | hypothetical protein | phrog_6017 | unknown function | unknown function | 1 | 37942 | 38259 |
| YP_009292533.1 | NC_031124_p19 | minor tail protein | phrog_4413 | minor tail protein | tail | 1 | 18752 | 19249 |
| YP_009292579.1 | NC_031124_p65 | hypothetical protein | phrog_7527 | unknown function | unknown function | 1 | 45712 | 45996 |
| YP_009292560.1 | NC_031124_p46 | hypothetical protein | phrog_5916 | unknown function | unknown function | 1 | 36247 | 36612 |
| YP_009292537.1 | NC_031124_p23 | minor tail protein | phrog_240 | head protein | head and packaging | 1 | 21555 | 21941 |
| YP_009292530.1 | NC_031124_p16 | tapemeasure | phrog_3547 | tail length tape measure protein | tail | 1 | 10855 | 15990 |
| YP_009292522.1 | NC_031124_p8 | major capsid protein | phrog_283 | major head protein | head and packaging | 1 | 6070 | 7218 |
| YP_009292544.1 | NC_031124_p30 | hypothetical protein | phrog_5807 | unknown function | unknown function | 1 | 27754 | 28008 |
| YP_009292617.1 | NC_031124_p103 | hypothetical protein | phrog_6800 | unknown function | unknown function | 1 | 62662 | 62838 |
| YP_009292637.1 | NC_031124_p123 | hypothetical protein | phrog_1909 | unknown function | unknown function | -1 | 71787 | 72638 |
| YP_009292611.1 | NC_031124_p97 | DNA polymerase III subunit | phrog_403 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 60410 | 61192 |
| YP_009292609.1 | NC_031124_p95 | hypothetical protein | phrog_1042 | unknown function | unknown function | 1 | 59810 | 60070 |
| YP_009292597.1 | NC_031124_p83 | hypothetical protein | phrog_1568 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 54753 | 55319 |
| YP_009292523.1 | NC_031124_p9 | head-to-tail connector | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 7231 | 7695 |
| YP_009292573.1 | NC_031124_p59 | hypothetical protein | phrog_5858 | unknown function | unknown function | 1 | 43118 | 43294 |
| YP_009292583.1 | NC_031124_p69 | hypothetical protein | phrog_1882 | unknown function | unknown function | 1 | 46936 | 47616 |
| YP_009292519.1 | NC_031124_p5 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 2638 | 4293 |
| YP_009292561.1 | NC_031124_p47 | esterase | phrog_1649 | metallo-phosphoesterase | other | 1 | 36605 | 37639 |
| YP_009292524.1 | NC_031124_p10 | head-to-tail connector | phrog_5309 | head-tail adaptor | connector | 1 | 7692 | 8030 |
| YP_009292545.1 | NC_031124_p31 | hypothetical protein | phrog_726 | unknown function | unknown function | 1 | 28011 | 28433 |
| YP_009292601.1 | NC_031124_p87 | RNA ligase | phrog_968 | RNA ligase | DNA, RNA and nucleotide metabolism | 1 | 56038 | 57336 |
| YP_009292572.1 | NC_031124_p58 | hypothetical protein | phrog_5872 | unknown function | unknown function | 1 | 42804 | 43121 |
| YP_009292623.1 | NC_031124_p109 | hypothetical protein | phrog_2869 | unknown function | unknown function | -1 | 65976 | 66167 |
| YP_009292610.1 | NC_031124_p96 | hypothetical protein | phrog_4472 | nucleotide kinase | other | 1 | 60045 | 60413 |
| YP_009292586.1 | NC_031124_p72 | hypothetical protein | phrog_6624 | unknown function | unknown function | 1 | 49162 | 49416 |
| YP_009292516.1 | NC_031124_p2 | terminase small subunit | phrog_1496 | terminase small subunit | head and packaging | 1 | 477 | 866 |
| YP_009292556.1 | NC_031124_p42 | excise | phrog_66 | excisionase and transcriptional regulator | integration and excision | 1 | 34695 | 34910 |
| YP_009292521.1 | NC_031124_p7 | scaffolding protein | phrog_3760 | head scaffolding protein | head and packaging | 1 | 5422 | 6027 |
| YP_009292616.1 | NC_031124_p102 | hypothetical protein | phrog_6027 | unknown function | unknown function | 1 | 62543 | 62662 |
| YP_009292566.1 | NC_031124_p52 | hypothetical protein | phrog_200 | lipoprotein | other | 1 | 38648 | 39607 |
| YP_009292595.1 | NC_031124_p81 | WhiB family transcription factor | phrog_472 | WhiB transcriptional factor | transcription regulation | 1 | 54050 | 54454 |
| YP_009292576.1 | NC_031124_p62 | hypothetical protein | phrog_1123 | unknown function | unknown function | 1 | 44445 | 44759 |
| YP_009292580.1 | NC_031124_p66 | hypothetical protein | phrog_1389 | unknown function | unknown function | 1 | 45993 | 46352 |
| YP_009292629.1 | NC_031124_p115 | hypothetical protein | phrog_1909 | unknown function | unknown function | -1 | 68090 | 68941 |
| YP_009292568.1 | NC_031124_p54 | hypothetical protein | phrog_2380 | unknown function | unknown function | 1 | 40201 | 40440 |
| YP_009292575.1 | NC_031124_p61 | hypothetical protein | phrog_466 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 43532 | 44464 |
| YP_009292604.1 | NC_031124_p90 | hypothetical protein | phrog_7495 | unknown function | unknown function | 1 | 58179 | 58574 |
| YP_009292618.1 | NC_031124_p104 | hypothetical protein | phrog_10206 | unknown function | unknown function | 1 | 62948 | 63082 |
| YP_009292526.1 | NC_031124_p12 | head-to-tail connector | phrog_123 | tail terminator | connector | 1 | 8471 | 8974 |
| YP_009292585.1 | NC_031124_p71 | hypothetical protein | phrog_1821 | transcriptional regulator WhiB-like | transcription regulation | 1 | 48875 | 49129 |
| YP_009292587.1 | NC_031124_p73 | hypothetical protein | phrog_6206 | unknown function | unknown function | 1 | 49406 | 49552 |
| YP_009292635.1 | NC_031124_p121 | hypothetical protein | phrog_6968 | unknown function | unknown function | -1 | 70329 | 70532 |
| YP_009292605.1 | NC_031124_p91 | hypothetical protein | phrog_7890 | unknown function | unknown function | 1 | 58574 | 58684 |
| YP_009292582.1 | NC_031124_p68 | hypothetical protein | phrog_542 | unknown function | unknown function | 1 | 46760 | 46939 |
| YP_009292567.1 | NC_031124_p53 | hypothetical protein | phrog_4870 | unknown function | unknown function | 1 | 39781 | 40200 |
| YP_009292551.1 | NC_031124_p37 | hypothetical protein | phrog_10128 | unknown function | unknown function | -1 | 30753 | 31121 |
| YP_009292536.1 | NC_031124_p22 | minor tail protein | phrog_4137 | unknown function | unknown function | 1 | 21195 | 21470 |
| YP_009292518.1 | NC_031124_p4 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 1069 | 2637 |
| YP_009292564.1 | NC_031124_p50 | hypothetical protein | phrog_7316 | unknown function | unknown function | 1 | 38267 | 38395 |
| YP_009292619.1 | NC_031124_p105 | hypothetical protein | phrog_940 | nuclease | DNA, RNA and nucleotide metabolism | 1 | 64511 | 65200 |
| YP_009292625.1 | NC_031124_p111 | hypothetical protein | phrog_14583 | unknown function | unknown function | -1 | 67017 | 67544 |
| YP_009292539.1 | NC_031124_p25 | hypothetical protein | phrog_9833 | unknown function | unknown function | 1 | 24259 | 24408 |
| YP_009292554.1 | NC_031124_p40 | immunity repressor | phrog_1746 | transcriptional repressor | transcription regulation | -1 | 33892 | 34281 |
| YP_009292638.1 | NC_031124_p124 | AAA ATPase | phrog_249 | porphyrin biosynthesis | moron, auxiliary metabolic gene and host takeover | -1 | 72848 | 74086 |
| YP_009292589.1 | NC_031124_p75 | nicotinate ribosyltransferase | phrog_448 | nicotinamide phosphoribosyl transferase | other | 1 | 50397 | 51881 |
| YP_009292632.1 | NC_031124_p118 | hypothetical protein | phrog_7390 | unknown function | unknown function | -1 | 69645 | 69839 |
| YP_009292607.1 | NC_031124_p93 | hypothetical protein | phrog_1969 | unknown function | unknown function | 1 | 58913 | 59251 |
| YP_009292612.1 | NC_031124_p98 | hypothetical protein | phrog_397 | unknown function | unknown function | 1 | 61193 | 61375 |
| YP_009292600.1 | NC_031124_p86 | hypothetical protein | phrog_14246 | unknown function | unknown function | 1 | 55961 | 56041 |
| YP_009292631.1 | NC_031124_p117 | hypothetical protein | phrog_6224 | unknown function | unknown function | -1 | 69446 | 69679 |
| YP_009292636.1 | NC_031124_p122 | hypothetical protein | phrog_6176 | unknown function | unknown function | 1 | 70592 | 71074 |
| YP_009292602.1 | NC_031124_p88 | hypothetical protein | phrog_3641 | unknown function | unknown function | 1 | 57320 | 57499 |
| YP_009292558.1 | NC_031124_p44 | hypothetical protein | phrog_8707 | unknown function | unknown function | 1 | 35250 | 35360 |
| YP_009292562.1 | NC_031124_p48 | hypothetical protein | phrog_9705 | unknown function | unknown function | 1 | 37620 | 37955 |
| YP_009292555.1 | NC_031124_p41 | CRO protein | phrog_1702 | transcriptional repressor | transcription regulation | 1 | 34468 | 34698 |
| YP_009292620.1 | NC_031124_p106 | hypothetical protein | phrog_6170 | unknown function | unknown function | 1 | 65209 | 65559 |
| YP_009292540.1 | NC_031124_p26 | hypothetical protein | phrog_3856 | minor tail protein | tail | 1 | 24409 | 25350 |
| YP_009292581.1 | NC_031124_p67 | HNH endonuclease | phrog_740 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 46399 | 46797 |
| YP_009292615.1 | NC_031124_p101 | hypothetical protein | phrog_3699 | unknown function | unknown function | 1 | 62332 | 62550 |
| YP_009292633.1 | NC_031124_p119 | hypothetical protein | phrog_6004 | unknown function | unknown function | -1 | 69926 | 70189 |
| YP_009292543.1 | NC_031124_p29 | hypothetical protein | phrog_5963 | holin | lysis | 1 | 27281 | 27754 |
| YP_009292569.1 | NC_031124_p55 | hypothetical protein | phrog_850 | RNA-binding protein | DNA, RNA and nucleotide metabolism | 1 | 40556 | 41986 |
| YP_009292527.1 | NC_031124_p13 | major tail protein | phrog_476 | major tail protein | tail | 1 | 9002 | 9901 |
| YP_009292570.1 | NC_031124_p56 | hypothetical protein | phrog_4670 | unknown function | unknown function | 1 | 42355 | 42486 |
| YP_009292515.1 | NC_031124_p1 | hypothetical protein | phrog_7082 | unknown function | unknown function | 1 | 91 | 468 |
| YP_009292593.1 | NC_031124_p79 | resolvase | phrog_34 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 53392 | 53805 |
| YP_009292529.1 | NC_031124_p15 | tail assembly chaperone | phrog_4464 | tail assembly chaperone | tail | 1 | 9990 | 10289 |
| YP_009292634.1 | NC_031124_p120 | hypothetical protein | phrog_8547 | unknown function | unknown function | -1 | 70193 | 70327 |
| YP_009292547.1 | NC_031124_p33 | hypothetical protein | phrog_6558 | unknown function | unknown function | -1 | 28760 | 29104 |
| YP_009292639.1 | NC_031124_p125 | hypothetical protein | phrog_12614 | unknown function | unknown function | -1 | 74453 | 74578 |
| YP_009292520.1 | NC_031124_p6 | capsid maturation protease | phrog_193 | head maturation protease | head and packaging | 1 | 4311 | 5369 |
| YP_009292594.1 | NC_031124_p80 | WhiB family transcription factor | phrog_472 | WhiB transcriptional factor | transcription regulation | 1 | 53753 | 54049 |
| YP_009292590.1 | NC_031124_p76 | polynucleotide kinase | phrog_505 | polynucleotide kinase | other | 1 | 51968 | 52894 |
| YP_009292574.1 | NC_031124_p60 | hypothetical protein | phrog_7425 | unknown function | unknown function | 1 | 43287 | 43490 |
| YP_009292599.1 | NC_031124_p85 | hypothetical protein | phrog_353 | toxin | moron, auxiliary metabolic gene and host takeover | 1 | 55755 | 55973 |
| YP_009292559.1 | NC_031124_p45 | hypothetical protein | phrog_572 | unknown function | unknown function | 1 | 35357 | 35773 |
| YP_009292596.1 | NC_031124_p82 | hypothetical protein | phrog_1941 | unknown function | unknown function | 1 | 54444 | 54674 |
| YP_009292528.1 | NC_031124_p14 | tail assembly chaperone | phrog_2624 | tail assembly chaperone | tail | 1 | 9990 | 10813 |
| YP_009292542.1 | NC_031124_p28 | lysin B | phrog_102 | endolysin | lysis | 1 | 26305 | 27276 |
| YP_009292626.1 | NC_031124_p112 | hypothetical protein | phrog_6739 | unknown function | unknown function | -1 | 67537 | 67653 |
| YP_009292614.1 | NC_031124_p100 | hypothetical protein | phrog_2633 | endonuclease VII | DNA, RNA and nucleotide metabolism | 1 | 61924 | 62331 |
| YP_009292557.1 | NC_031124_p43 | hypothetical protein | phrog_762 | unknown function | unknown function | 1 | 34907 | 35269 |
| YP_009292552.1 | NC_031124_p38 | integrase | phrog_1 | integrase | integration and excision | 1 | 31657 | 32964 |
| YP_009292548.1 | NC_031124_p34 | hypothetical protein | phrog_9776 | unknown function | unknown function | -1 | 29110 | 29397 |
| YP_009292553.1 | NC_031124_p39 | hypothetical protein | phrog_950 | unknown function | unknown function | -1 | 32961 | 33740 |
| YP_009292624.1 | NC_031124_p110 | hypothetical protein | phrog_4776 | unknown function | unknown function | -1 | 66269 | 66985 |
| YP_009292538.1 | NC_031124_p24 | minor tail protein | phrog_9784 | minor tail protein | tail | 1 | 21942 | 24227 |
| YP_009292598.1 | NC_031124_p84 | ssDNA binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 55306 | 55692 |
| YP_009292535.1 | NC_031124_p21 | minor tail protein | phrog_9672 | minor tail protein | tail | 1 | 21035 | 21205 |
| YP_009292621.1 | NC_031124_p107 | hypothetical protein | phrog_10010 | unknown function | unknown function | -1 | 65603 | 65758 |
| YP_009292622.1 | NC_031124_p108 | hypothetical protein | phrog_2124 | unknown function | unknown function | -1 | 65755 | 65895 |
| YP_009292565.1 | NC_031124_p51 | hypothetical protein | phrog_9674 | unknown function | unknown function | 1 | 38432 | 38560 |
| YP_009292630.1 | NC_031124_p116 | hypothetical protein | phrog_3777 | unknown function | unknown function | -1 | 69038 | 69412 |
| YP_009292627.1 | NC_031124_p113 | hypothetical protein | phrog_6725 | unknown function | unknown function | -1 | 67653 | 67823 |
| YP_009292628.1 | NC_031124_p114 | hypothetical protein | phrog_6230 | unknown function | unknown function | -1 | 67816 | 68061 |
| YP_009292608.1 | NC_031124_p94 | HNH endonuclease | phrog_959 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 59299 | 59712 |
| YP_009292606.1 | NC_031124_p92 | hypothetical protein | phrog_2218 | unknown function | unknown function | 1 | 58681 | 58920 |
| YP_009292532.1 | NC_031124_p18 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 16994 | 18727 |
| YP_009292588.1 | NC_031124_p74 | phosphoribosyl pyrophosphate transferase | phrog_619 | ribose-phosphate pyrophosphokinase | other | 1 | 49537 | 50400 |
| YP_009292571.1 | NC_031124_p57 | hypothetical protein | phrog_301 | secreted protein | other | 1 | 42479 | 42814 |
| YP_009292525.1 | NC_031124_p11 | head-to-tail connector | phrog_5775 | head-tail connector protein | connector | 1 | 8030 | 8461 |
| YP_009292591.1 | NC_031124_p77 | hypothetical protein | singleton | unknown function | unknown function | 1 | 52915 | 53028 |
| YP_009292578.1 | NC_031124_p64 | hypothetical protein | phrog_5917 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 45515 | 45715 |