| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_031129 |
Definition |
Salmonella phage SJ46, complete genome. |
Molecule type |
DNA |
Genome structure |
circular |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Punavirus; Salmonella virus SJ46. |
DB of origin |
REFSEQ |
Length |
103445 |
Host Name |
Salmonella enterica |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
122 |
%GC |
48.57 |
Number of singletons |
10 |
Number of paralogs |
5 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009293555.1 | NC_031129_p98 | membrane protein | singleton | unknown function | unknown function | -1 | 84851 | 84985 |
| YP_009293565.1 | NC_031129_p108 | baseplate protein | phrog_1269 | baseplate wedge subunit | tail | 1 | 90874 | 91251 |
| YP_009293545.1 | NC_031129_p88 | hypothetical protein | phrog_2638 | unknown function | unknown function | -1 | 80411 | 80785 |
| YP_009293551.1 | NC_031129_p94 | hypothetical protein | phrog_250 | unknown function | unknown function | -1 | 82693 | 83373 |
| YP_009293479.1 | NC_031129_p22 | outer membrane lipoprotein | phrog_1277 | DNA methyltransferase | other | 1 | 18643 | 19164 |
| YP_009293489.1 | NC_031129_p32 | tail fiber repeat family protein | phrog_454 | tail fiber protein | tail | 1 | 28514 | 30856 |
| YP_009293472.1 | NC_031129_p15 | baseplate structural protein | phrog_1120 | tail tube protein | tail | 1 | 12552 | 13061 |
| YP_009293465.1 | NC_031129_p8 | hypothetical protein | phrog_2876 | unknown function | unknown function | 1 | 4324 | 5007 |
| YP_009293461.1 | NC_031129_p4 | outer membrane lytic protein | phrog_89 | Rz-like spanin | lysis | 1 | 1820 | 2242 |
| YP_009293532.1 | NC_031129_p75 | large terminase protein | phrog_2 | terminase large subunit | head and packaging | -1 | 71323 | 72807 |
| YP_009293476.1 | NC_031129_p19 | replication protein | phrog_2418 | unknown function | unknown function | -1 | 14931 | 15773 |
| YP_009293463.1 | NC_031129_p6 | UpfB | phrog_1453 | unknown function | unknown function | 1 | 2420 | 2812 |
| YP_009293501.1 | NC_031129_p44 | transposase | phrog_506 | transposase | integration and excision | -1 | 38271 | 39479 |
| YP_009293519.1 | NC_031129_p62 | hypothetical protein | singleton | unknown function | unknown function | 1 | 61861 | 62199 |
| YP_009293495.1 | NC_031129_p38 | hypothetical protein | phrog_1527 | holin | lysis | 1 | 34178 | 34522 |
| YP_009293493.1 | NC_031129_p36 | site-specific recombinase | phrog_125 | DNA invertase | DNA, RNA and nucleotide metabolism | 1 | 33176 | 33757 |
| YP_009293538.1 | NC_031129_p81 | prevention of host death by Doc toxicity | phrog_375 | Phd-like antitoxin | moron, auxiliary metabolic gene and host takeover | -1 | 76263 | 76484 |
| YP_009293483.1 | NC_031129_p26 | morphogenetic protein | phrog_1854 | PmgB-like head morphogenesis | head and packaging | 1 | 20991 | 21872 |
| YP_009293459.1 | NC_031129_p2 | alanine racemase | phrog_281 | PAAR motif of membran proteins | moron, auxiliary metabolic gene and host takeover | 1 | 804 | 983 |
| YP_009293571.1 | NC_031129_p114 | hypothetical protein | phrog_2518 | unknown function | unknown function | -1 | 95672 | 96670 |
| YP_009293566.1 | NC_031129_p109 | tail protein | phrog_1722 | tail protein | tail | 1 | 91261 | 92478 |
| YP_009293510.1 | NC_031129_p53 | portal protein | phrog_1497 | portal protein | head and packaging | -1 | 47080 | 48789 |
| YP_009293506.1 | NC_031129_p49 | single-stranded DNA-binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 44561 | 45049 |
| YP_009293579.1 | NC_031129_p122 | DNA adenine methylase family protein | phrog_116 | DNA methyltransferase | other | -1 | 100372 | 102795 |
| YP_009293464.1 | NC_031129_p7 | initiator replication family protein | phrog_775 | replication helicase | DNA, RNA and nucleotide metabolism | 1 | 3111 | 4031 |
| YP_009293470.1 | NC_031129_p13 | tail tube protein | phrog_1053 | unknown function | unknown function | 1 | 11108 | 11923 |
| YP_009293526.1 | NC_031129_p69 | recombination enhancement function protein | phrog_2321 | Ref-like RecA filament endonuclease | DNA, RNA and nucleotide metabolism | -1 | 67071 | 67652 |
| YP_009293543.1 | NC_031129_p86 | hypothetical protein | phrog_4403 | unknown function | unknown function | -1 | 79138 | 79500 |
| YP_009293486.1 | NC_031129_p29 | baseplate structural protein | phrog_1369 | baseplate protein | tail | 1 | 25720 | 27153 |
| YP_009293569.1 | NC_031129_p112 | tail length tape measure protein | phrog_1390 | tail protein | tail | 1 | 93984 | 95000 |
| YP_009293473.1 | NC_031129_p16 | hypothetical protein | phrog_7522 | unknown function | unknown function | 1 | 13197 | 13829 |
| YP_009293494.1 | NC_031129_p37 | DNA invertase | phrog_8275 | DNA invertase | DNA, RNA and nucleotide metabolism | -1 | 33889 | 34113 |
| YP_009293559.1 | NC_031129_p102 | serine/threonine-protein phosphatase | phrog_246 | NinI-like serine-threonine phosphatase | other | -1 | 87877 | 88569 |
| YP_009293552.1 | NC_031129_p95 | hypothetical protein | phrog_2457 | unknown function | unknown function | -1 | 83370 | 84014 |
| YP_009293528.1 | NC_031129_p71 | GST-loxP-cre recombinase fusion protein | phrog_1 | integrase | integration and excision | -1 | 68262 | 69293 |
| YP_009293570.1 | NC_031129_p113 | baseplate protein | phrog_430 | baseplate hub subunit and tail lysozyme | tail | 1 | 94993 | 95625 |
| YP_009293509.1 | NC_031129_p52 | head processing protein | phrog_1801 | tail fiber protein | tail | -1 | 46068 | 47087 |
| YP_009293458.1 | NC_031129_p1 | hypothetical protein | phrog_2213 | nucleoside triphosphate pyrophosphohydrolase | other | -1 | 245 | 529 |
| YP_009293522.1 | NC_031129_p65 | transposase | phrog_2262 | transposase | integration and excision | -1 | 64111 | 65079 |
| YP_009293513.1 | NC_031129_p56 | hypothetical protein | phrog_1629 | Ulx-like anti-restriction | moron, auxiliary metabolic gene and host takeover | 1 | 55666 | 56106 |
| YP_009293556.1 | NC_031129_p99 | 3'-phosphatase, 5'-polynucleotide kinase | phrog_415 | polynucleotide kinase | other | -1 | 85036 | 85542 |
| YP_009293484.1 | NC_031129_p27 | transglycosylase SLT domain protein | phrog_2533 | unknown function | unknown function | 1 | 21954 | 25367 |
| YP_009293523.1 | NC_031129_p66 | extended-spectrum beta-lactamase CTX-M-27 | phrog_14881 | unknown function | unknown function | -1 | 65114 | 65965 |
| YP_009293576.1 | NC_031129_p119 | hypothetical protein | singleton | unknown function | unknown function | -1 | 99324 | 99455 |
| YP_009293514.1 | NC_031129_p57 | modulator protein | phrog_2160 | unknown function | unknown function | 1 | 56103 | 56351 |
| YP_009293511.1 | NC_031129_p54 | DNA adenine methyltransferase | phrog_11801 | DNA methyltransferase | other | 1 | 48880 | 53361 |
| YP_009293480.1 | NC_031129_p23 | membrane protein | phrog_1094 | unknown function | unknown function | 1 | 19168 | 19707 |
| YP_009293477.1 | NC_031129_p20 | host killing protein | phrog_63 | anti-repressor Ant | transcription regulation | -1 | 15803 | 16603 |
| YP_009293549.1 | NC_031129_p92 | hypothetical protein | phrog_2814 | unknown function | unknown function | -1 | 81574 | 81834 |
| YP_009293462.1 | NC_031129_p5 | outer membrane lipoprotein | phrog_15803 | lipoprotein | other | 1 | 2277 | 2408 |
| YP_009293564.1 | NC_031129_p107 | morphogenetic protein | phrog_54 | DksA-like zinc-finger protein | other | -1 | 90482 | 90727 |
| YP_009293562.1 | NC_031129_p105 | hypothetical protein | phrog_2350 | unknown function | unknown function | -1 | 89679 | 89834 |
| YP_009293504.1 | NC_031129_p47 | insertion-associated protein | phrog_2326 | unknown function | unknown function | -1 | 42897 | 43679 |
| YP_009293548.1 | NC_031129_p91 | hypothetical protein | phrog_3876 | unknown function | unknown function | -1 | 81264 | 81497 |
| YP_009293516.1 | NC_031129_p59 | maturation control protein | phrog_1837 | unknown function | unknown function | -1 | 57623 | 58264 |
| YP_009293530.1 | NC_031129_p73 | C1 repressor inactivator | phrog_2079 | unknown function | unknown function | 1 | 70127 | 70336 |
| YP_009293515.1 | NC_031129_p58 | RelA/SpoT family protein | phrog_4773 | unknown function | unknown function | -1 | 56389 | 57510 |
| YP_009293536.1 | NC_031129_p79 | hypothetical protein | phrog_3345 | unknown function | unknown function | -1 | 75699 | 75878 |
| YP_009293460.1 | NC_031129_p3 | hypothetical protein | phrog_1559 | unknown function | unknown function | 1 | 992 | 1780 |
| YP_009293497.1 | NC_031129_p40 | lysis determining protein | phrog_1898 | lysis determining protein | lysis | 1 | 34916 | 35359 |
| YP_009293512.1 | NC_031129_p55 | DNA methylase | phrog_21007 | DNA methyltransferase | other | 1 | 53542 | 55632 |
| YP_009293502.1 | NC_031129_p45 | hypothetical protein | phrog_2299 | unknown function | unknown function | 1 | 39579 | 42566 |
| YP_009293525.1 | NC_031129_p68 | aerotaxis sensor receptor protein | singleton | unknown function | unknown function | 1 | 66576 | 66923 |
| YP_009293520.1 | NC_031129_p63 | methyl-accepting chemotaxis protein | singleton | unknown function | unknown function | 1 | 62353 | 62982 |
| YP_009293500.1 | NC_031129_p43 | DdrA | phrog_1855 | DdrA-like anti-restriction protein | moron, auxiliary metabolic gene and host takeover | 1 | 37866 | 38231 |
| YP_009293577.1 | NC_031129_p120 | hypothetical protein | singleton | unknown function | unknown function | -1 | 99455 | 99874 |
| YP_009293499.1 | NC_031129_p42 | DarA | phrog_1926 | released from the phage upon host infection | other | 1 | 35950 | 37869 |
| YP_009293487.1 | NC_031129_p30 | tail tube protein | phrog_2015 | tail tube protein | tail | 1 | 27153 | 27989 |
| YP_009293471.1 | NC_031129_p14 | morphogenetic protein | phrog_1114 | PmgG-like head morphogenesis | head and packaging | 1 | 11959 | 12540 |
| YP_009293542.1 | NC_031129_p85 | hypothetical protein | singleton | unknown function | unknown function | 1 | 78925 | 79062 |
| YP_009293546.1 | NC_031129_p89 | hypothetical protein | phrog_1258 | unknown function | unknown function | -1 | 80792 | 81052 |
| YP_009293554.1 | NC_031129_p97 | hypothetical protein | phrog_874 | unknown function | unknown function | -1 | 84260 | 84841 |
| YP_009293503.1 | NC_031129_p46 | repressor protein Hxr | phrog_2292 | unknown function | unknown function | 1 | 42556 | 42867 |
| YP_009293482.1 | NC_031129_p25 | major tail tube protein | phrog_1842 | tail tube protein | tail | 1 | 20365 | 20976 |
| YP_009293492.1 | NC_031129_p35 | tail protein | phrog_454 | tail fiber protein | tail | -1 | 31856 | 33181 |
| YP_009293491.1 | NC_031129_p34 | tail-fiber asembly protein | phrog_136 | tail fiber assembly protein | tail | -1 | 31269 | 31856 |
| YP_009293535.1 | NC_031129_p78 | hypothetical protein | phrog_96 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 74628 | 75671 |
| YP_009293529.1 | NC_031129_p72 | Cre-associated regulatory protein | phrog_804 | unknown function | unknown function | -1 | 69301 | 69522 |
| YP_009293496.1 | NC_031129_p39 | lysis determining protein | phrog_1527 | holin | lysis | 1 | 34590 | 34919 |
| YP_009293558.1 | NC_031129_p101 | HdmD | phrog_1962 | glycosyltransferase | moron, auxiliary metabolic gene and host takeover | -1 | 87179 | 87880 |
| YP_009293557.1 | NC_031129_p100 | morphogenetic protein | phrog_1660 | PmgS-like head morphogenesis | head and packaging | -1 | 85615 | 86877 |
| YP_009293485.1 | NC_031129_p28 | morphogenetic protein | phrog_1896 | unknown function | unknown function | 1 | 25367 | 25723 |
| YP_009293573.1 | NC_031129_p116 | tellurite or colicin resistance protein | phrog_23152 | unknown function | unknown function | -1 | 98395 | 98502 |
| YP_009293541.1 | NC_031129_p84 | hypothetical protein | phrog_5797 | unknown function | unknown function | 1 | 77706 | 78062 |
| YP_009293534.1 | NC_031129_p77 | late promoter activating protein | phrog_1704 | Lpa-like transcriptional activator | transcription regulation | -1 | 74087 | 74509 |
| YP_009293563.1 | NC_031129_p106 | morphogenetic function protein | phrog_2363 | unknown function | unknown function | -1 | 89901 | 90479 |
| YP_009293508.1 | NC_031129_p51 | holin | phrog_21930 | holin | lysis | 1 | 45769 | 46020 |
| YP_009293568.1 | NC_031129_p111 | hypothetical protein | phrog_1767 | baseplate protein | tail | 1 | 93197 | 93982 |
| YP_009293468.1 | NC_031129_p11 | baseplate protein | phrog_1014 | unknown function | unknown function | 1 | 7742 | 9448 |
| YP_009293507.1 | NC_031129_p50 | lysozyme | phrog_7 | endolysin | lysis | 1 | 45132 | 45776 |
| YP_009293527.1 | NC_031129_p70 | lysogeny establishment protein | phrog_1968 | unknown function | unknown function | -1 | 67900 | 68211 |
| YP_009293469.1 | NC_031129_p12 | hypothetical protein | phrog_1036 | tail sheath | tail | 1 | 9509 | 11098 |
| YP_009293550.1 | NC_031129_p93 | hypothetical protein | phrog_60 | unknown function | unknown function | -1 | 81831 | 82691 |
| YP_009293560.1 | NC_031129_p103 | morphogenetic protein | phrog_2111 | unknown function | unknown function | -1 | 88551 | 89087 |
| YP_009293567.1 | NC_031129_p110 | tail protein | phrog_1906 | tail protein | tail | 1 | 92482 | 93210 |
| YP_009293498.1 | NC_031129_p41 | hypothetical protein | phrog_1620 | Hdf-like antirestriction | moron, auxiliary metabolic gene and host takeover | 1 | 35346 | 35948 |
| YP_009293518.1 | NC_031129_p61 | resolvase | phrog_125 | DNA invertase | DNA, RNA and nucleotide metabolism | -1 | 61483 | 61857 |
| YP_009293547.1 | NC_031129_p90 | hypothetical protein | phrog_5525 | unknown function | unknown function | -1 | 81093 | 81215 |
| YP_009293540.1 | NC_031129_p83 | hypothetical protein | phrog_6164 | unknown function | unknown function | 1 | 77121 | 77705 |
| YP_009293578.1 | NC_031129_p121 | hypothetical protein | singleton | unknown function | unknown function | 1 | 99890 | 100207 |
| YP_009293474.1 | NC_031129_p17 | hypothetical protein | phrog_3772 | unknown function | unknown function | -1 | 14009 | 14260 |
| YP_009293539.1 | NC_031129_p82 | DNA repair protein | phrog_811 | UmuD-like protein | DNA, RNA and nucleotide metabolism | -1 | 76557 | 76946 |
| YP_009293505.1 | NC_031129_p48 | hypothetical protein | phrog_872 | unknown function | unknown function | -1 | 43686 | 44531 |
| YP_009293466.1 | NC_031129_p9 | plasmid partition protein A | phrog_164 | ParA-like partition protein | DNA, RNA and nucleotide metabolism | 1 | 5302 | 6498 |
| YP_009293490.1 | NC_031129_p33 | tail fiber protein | phrog_188 | tail fiber assembly protein | tail | 1 | 30858 | 31265 |
| YP_009293478.1 | NC_031129_p21 | antirepressor protein | phrog_63 | anti-repressor Ant | transcription regulation | -1 | 16768 | 17814 |
| YP_009293553.1 | NC_031129_p96 | hypothetical protein | phrog_4030 | unknown function | unknown function | -1 | 84007 | 84267 |
| YP_009293517.1 | NC_031129_p60 | transposase | phrog_7951 | transposase | integration and excision | -1 | 58513 | 61479 |
| YP_009293561.1 | NC_031129_p104 | morphogenic function protein | phrog_4603 | alpha-2;3-sialyltransferase | other | -1 | 89075 | 89575 |
| YP_009293524.1 | NC_031129_p67 | hypothetical protein | singleton | unknown function | unknown function | -1 | 66239 | 66496 |
| YP_009293521.1 | NC_031129_p64 | iron outer membrane receptor | singleton | unknown function | unknown function | -1 | 62957 | 63982 |
| YP_009293475.1 | NC_031129_p18 | replication protein | phrog_108 | Lom outer membrane protein | other | -1 | 14320 | 14835 |
| YP_009293572.1 | NC_031129_p115 | replicative DNA helicase | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | -1 | 96670 | 98034 |
| YP_009293467.1 | NC_031129_p10 | plasmid partition protein B | phrog_1146 | ParB-like partition protein | DNA, RNA and nucleotide metabolism | 1 | 6515 | 7516 |
| YP_009293537.1 | NC_031129_p80 | toxin protein | phrog_577 | Doc-like toxin | moron, auxiliary metabolic gene and host takeover | -1 | 75883 | 76263 |
| YP_009293481.1 | NC_031129_p24 | morphogenetic protein | phrog_1851 | PmgC-like head morphogenesis | head and packaging | 1 | 19836 | 20354 |
| YP_009293544.1 | NC_031129_p87 | hypothetical protein | phrog_60 | unknown function | unknown function | -1 | 79497 | 80429 |
| YP_009293574.1 | NC_031129_p117 | tellurite or colicin resistance protein | phrog_1470 | TciB-like inhibition of cell division or resistance to colicin | moron, auxiliary metabolic gene and host takeover | -1 | 98502 | 98666 |
| YP_009293575.1 | NC_031129_p118 | tellurite or colicin resistance protein | phrog_632 | tellurite resistance | moron, auxiliary metabolic gene and host takeover | -1 | 98666 | 99091 |
| YP_009293531.1 | NC_031129_p74 | primary repressor of lytic function | phrog_1678 | unknown function | unknown function | 1 | 70447 | 71298 |
| YP_009293533.1 | NC_031129_p76 | terminase A protein | phrog_1711 | terminase | head and packaging | -1 | 72807 | 74000 |
| YP_009293488.1 | NC_031129_p31 | tail fiber structure or assembly protein | phrog_2032 | tail fiber assembly protein | tail | 1 | 28068 | 28502 |