Genomic map of Salmonella phage SJ46 (NC_031129)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_031129
Definition
Salmonella phage SJ46, complete genome.
Molecule type
DNA
Genome structure
circular
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Punavirus; Salmonella virus SJ46.
DB of origin
REFSEQ
Length
103445
Host Name
Salmonella enterica
Host domain
Bacteria
Is prophage?
undef
Number of proteins
122
%GC
48.57
Number of singletons
10
Number of paralogs
5

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009293555.1 NC_031129_p98 membrane protein singleton unknown function unknown function -1 84851 84985
YP_009293565.1 NC_031129_p108 baseplate protein phrog_1269 baseplate wedge subunit tail 1 90874 91251
YP_009293545.1 NC_031129_p88 hypothetical protein phrog_2638 unknown function unknown function -1 80411 80785
YP_009293551.1 NC_031129_p94 hypothetical protein phrog_250 unknown function unknown function -1 82693 83373
YP_009293479.1 NC_031129_p22 outer membrane lipoprotein phrog_1277 DNA methyltransferase other 1 18643 19164
YP_009293489.1 NC_031129_p32 tail fiber repeat family protein phrog_454 tail fiber protein tail 1 28514 30856
YP_009293472.1 NC_031129_p15 baseplate structural protein phrog_1120 tail tube protein tail 1 12552 13061
YP_009293465.1 NC_031129_p8 hypothetical protein phrog_2876 unknown function unknown function 1 4324 5007
YP_009293461.1 NC_031129_p4 outer membrane lytic protein phrog_89 Rz-like spanin lysis 1 1820 2242
YP_009293532.1 NC_031129_p75 large terminase protein phrog_2 terminase large subunit head and packaging -1 71323 72807
YP_009293476.1 NC_031129_p19 replication protein phrog_2418 unknown function unknown function -1 14931 15773
YP_009293463.1 NC_031129_p6 UpfB phrog_1453 unknown function unknown function 1 2420 2812
YP_009293501.1 NC_031129_p44 transposase phrog_506 transposase integration and excision -1 38271 39479
YP_009293519.1 NC_031129_p62 hypothetical protein singleton unknown function unknown function 1 61861 62199
YP_009293495.1 NC_031129_p38 hypothetical protein phrog_1527 holin lysis 1 34178 34522
YP_009293493.1 NC_031129_p36 site-specific recombinase phrog_125 DNA invertase DNA, RNA and nucleotide metabolism 1 33176 33757
YP_009293538.1 NC_031129_p81 prevention of host death by Doc toxicity phrog_375 Phd-like antitoxin moron, auxiliary metabolic gene and host takeover -1 76263 76484
YP_009293483.1 NC_031129_p26 morphogenetic protein phrog_1854 PmgB-like head morphogenesis head and packaging 1 20991 21872
YP_009293459.1 NC_031129_p2 alanine racemase phrog_281 PAAR motif of membran proteins moron, auxiliary metabolic gene and host takeover 1 804 983
YP_009293571.1 NC_031129_p114 hypothetical protein phrog_2518 unknown function unknown function -1 95672 96670
YP_009293566.1 NC_031129_p109 tail protein phrog_1722 tail protein tail 1 91261 92478
YP_009293510.1 NC_031129_p53 portal protein phrog_1497 portal protein head and packaging -1 47080 48789
YP_009293506.1 NC_031129_p49 single-stranded DNA-binding protein phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism -1 44561 45049
YP_009293579.1 NC_031129_p122 DNA adenine methylase family protein phrog_116 DNA methyltransferase other -1 100372 102795
YP_009293464.1 NC_031129_p7 initiator replication family protein phrog_775 replication helicase DNA, RNA and nucleotide metabolism 1 3111 4031
YP_009293470.1 NC_031129_p13 tail tube protein phrog_1053 unknown function unknown function 1 11108 11923
YP_009293526.1 NC_031129_p69 recombination enhancement function protein phrog_2321 Ref-like RecA filament endonuclease DNA, RNA and nucleotide metabolism -1 67071 67652
YP_009293543.1 NC_031129_p86 hypothetical protein phrog_4403 unknown function unknown function -1 79138 79500
YP_009293486.1 NC_031129_p29 baseplate structural protein phrog_1369 baseplate protein tail 1 25720 27153
YP_009293569.1 NC_031129_p112 tail length tape measure protein phrog_1390 tail protein tail 1 93984 95000
YP_009293473.1 NC_031129_p16 hypothetical protein phrog_7522 unknown function unknown function 1 13197 13829
YP_009293494.1 NC_031129_p37 DNA invertase phrog_8275 DNA invertase DNA, RNA and nucleotide metabolism -1 33889 34113
YP_009293559.1 NC_031129_p102 serine/threonine-protein phosphatase phrog_246 NinI-like serine-threonine phosphatase other -1 87877 88569
YP_009293552.1 NC_031129_p95 hypothetical protein phrog_2457 unknown function unknown function -1 83370 84014
YP_009293528.1 NC_031129_p71 GST-loxP-cre recombinase fusion protein phrog_1 integrase integration and excision -1 68262 69293
YP_009293570.1 NC_031129_p113 baseplate protein phrog_430 baseplate hub subunit and tail lysozyme tail 1 94993 95625
YP_009293509.1 NC_031129_p52 head processing protein phrog_1801 tail fiber protein tail -1 46068 47087
YP_009293458.1 NC_031129_p1 hypothetical protein phrog_2213 nucleoside triphosphate pyrophosphohydrolase other -1 245 529
YP_009293522.1 NC_031129_p65 transposase phrog_2262 transposase integration and excision -1 64111 65079
YP_009293513.1 NC_031129_p56 hypothetical protein phrog_1629 Ulx-like anti-restriction moron, auxiliary metabolic gene and host takeover 1 55666 56106
YP_009293556.1 NC_031129_p99 3'-phosphatase, 5'-polynucleotide kinase phrog_415 polynucleotide kinase other -1 85036 85542
YP_009293484.1 NC_031129_p27 transglycosylase SLT domain protein phrog_2533 unknown function unknown function 1 21954 25367
YP_009293523.1 NC_031129_p66 extended-spectrum beta-lactamase CTX-M-27 phrog_14881 unknown function unknown function -1 65114 65965
YP_009293576.1 NC_031129_p119 hypothetical protein singleton unknown function unknown function -1 99324 99455
YP_009293514.1 NC_031129_p57 modulator protein phrog_2160 unknown function unknown function 1 56103 56351
YP_009293511.1 NC_031129_p54 DNA adenine methyltransferase phrog_11801 DNA methyltransferase other 1 48880 53361
YP_009293480.1 NC_031129_p23 membrane protein phrog_1094 unknown function unknown function 1 19168 19707
YP_009293477.1 NC_031129_p20 host killing protein phrog_63 anti-repressor Ant transcription regulation -1 15803 16603
YP_009293549.1 NC_031129_p92 hypothetical protein phrog_2814 unknown function unknown function -1 81574 81834
YP_009293462.1 NC_031129_p5 outer membrane lipoprotein phrog_15803 lipoprotein other 1 2277 2408
YP_009293564.1 NC_031129_p107 morphogenetic protein phrog_54 DksA-like zinc-finger protein other -1 90482 90727
YP_009293562.1 NC_031129_p105 hypothetical protein phrog_2350 unknown function unknown function -1 89679 89834
YP_009293504.1 NC_031129_p47 insertion-associated protein phrog_2326 unknown function unknown function -1 42897 43679
YP_009293548.1 NC_031129_p91 hypothetical protein phrog_3876 unknown function unknown function -1 81264 81497
YP_009293516.1 NC_031129_p59 maturation control protein phrog_1837 unknown function unknown function -1 57623 58264
YP_009293530.1 NC_031129_p73 C1 repressor inactivator phrog_2079 unknown function unknown function 1 70127 70336
YP_009293515.1 NC_031129_p58 RelA/SpoT family protein phrog_4773 unknown function unknown function -1 56389 57510
YP_009293536.1 NC_031129_p79 hypothetical protein phrog_3345 unknown function unknown function -1 75699 75878
YP_009293460.1 NC_031129_p3 hypothetical protein phrog_1559 unknown function unknown function 1 992 1780
YP_009293497.1 NC_031129_p40 lysis determining protein phrog_1898 lysis determining protein lysis 1 34916 35359
YP_009293512.1 NC_031129_p55 DNA methylase phrog_21007 DNA methyltransferase other 1 53542 55632
YP_009293502.1 NC_031129_p45 hypothetical protein phrog_2299 unknown function unknown function 1 39579 42566
YP_009293525.1 NC_031129_p68 aerotaxis sensor receptor protein singleton unknown function unknown function 1 66576 66923
YP_009293520.1 NC_031129_p63 methyl-accepting chemotaxis protein singleton unknown function unknown function 1 62353 62982
YP_009293500.1 NC_031129_p43 DdrA phrog_1855 DdrA-like anti-restriction protein moron, auxiliary metabolic gene and host takeover 1 37866 38231
YP_009293577.1 NC_031129_p120 hypothetical protein singleton unknown function unknown function -1 99455 99874
YP_009293499.1 NC_031129_p42 DarA phrog_1926 released from the phage upon host infection other 1 35950 37869
YP_009293487.1 NC_031129_p30 tail tube protein phrog_2015 tail tube protein tail 1 27153 27989
YP_009293471.1 NC_031129_p14 morphogenetic protein phrog_1114 PmgG-like head morphogenesis head and packaging 1 11959 12540
YP_009293542.1 NC_031129_p85 hypothetical protein singleton unknown function unknown function 1 78925 79062
YP_009293546.1 NC_031129_p89 hypothetical protein phrog_1258 unknown function unknown function -1 80792 81052
YP_009293554.1 NC_031129_p97 hypothetical protein phrog_874 unknown function unknown function -1 84260 84841
YP_009293503.1 NC_031129_p46 repressor protein Hxr phrog_2292 unknown function unknown function 1 42556 42867
YP_009293482.1 NC_031129_p25 major tail tube protein phrog_1842 tail tube protein tail 1 20365 20976
YP_009293492.1 NC_031129_p35 tail protein phrog_454 tail fiber protein tail -1 31856 33181
YP_009293491.1 NC_031129_p34 tail-fiber asembly protein phrog_136 tail fiber assembly protein tail -1 31269 31856
YP_009293535.1 NC_031129_p78 hypothetical protein phrog_96 HNH endonuclease DNA, RNA and nucleotide metabolism -1 74628 75671
YP_009293529.1 NC_031129_p72 Cre-associated regulatory protein phrog_804 unknown function unknown function -1 69301 69522
YP_009293496.1 NC_031129_p39 lysis determining protein phrog_1527 holin lysis 1 34590 34919
YP_009293558.1 NC_031129_p101 HdmD phrog_1962 glycosyltransferase moron, auxiliary metabolic gene and host takeover -1 87179 87880
YP_009293557.1 NC_031129_p100 morphogenetic protein phrog_1660 PmgS-like head morphogenesis head and packaging -1 85615 86877
YP_009293485.1 NC_031129_p28 morphogenetic protein phrog_1896 unknown function unknown function 1 25367 25723
YP_009293573.1 NC_031129_p116 tellurite or colicin resistance protein phrog_23152 unknown function unknown function -1 98395 98502
YP_009293541.1 NC_031129_p84 hypothetical protein phrog_5797 unknown function unknown function 1 77706 78062
YP_009293534.1 NC_031129_p77 late promoter activating protein phrog_1704 Lpa-like transcriptional activator transcription regulation -1 74087 74509
YP_009293563.1 NC_031129_p106 morphogenetic function protein phrog_2363 unknown function unknown function -1 89901 90479
YP_009293508.1 NC_031129_p51 holin phrog_21930 holin lysis 1 45769 46020
YP_009293568.1 NC_031129_p111 hypothetical protein phrog_1767 baseplate protein tail 1 93197 93982
YP_009293468.1 NC_031129_p11 baseplate protein phrog_1014 unknown function unknown function 1 7742 9448
YP_009293507.1 NC_031129_p50 lysozyme phrog_7 endolysin lysis 1 45132 45776
YP_009293527.1 NC_031129_p70 lysogeny establishment protein phrog_1968 unknown function unknown function -1 67900 68211
YP_009293469.1 NC_031129_p12 hypothetical protein phrog_1036 tail sheath tail 1 9509 11098
YP_009293550.1 NC_031129_p93 hypothetical protein phrog_60 unknown function unknown function -1 81831 82691
YP_009293560.1 NC_031129_p103 morphogenetic protein phrog_2111 unknown function unknown function -1 88551 89087
YP_009293567.1 NC_031129_p110 tail protein phrog_1906 tail protein tail 1 92482 93210
YP_009293498.1 NC_031129_p41 hypothetical protein phrog_1620 Hdf-like antirestriction moron, auxiliary metabolic gene and host takeover 1 35346 35948
YP_009293518.1 NC_031129_p61 resolvase phrog_125 DNA invertase DNA, RNA and nucleotide metabolism -1 61483 61857
YP_009293547.1 NC_031129_p90 hypothetical protein phrog_5525 unknown function unknown function -1 81093 81215
YP_009293540.1 NC_031129_p83 hypothetical protein phrog_6164 unknown function unknown function 1 77121 77705
YP_009293578.1 NC_031129_p121 hypothetical protein singleton unknown function unknown function 1 99890 100207
YP_009293474.1 NC_031129_p17 hypothetical protein phrog_3772 unknown function unknown function -1 14009 14260
YP_009293539.1 NC_031129_p82 DNA repair protein phrog_811 UmuD-like protein DNA, RNA and nucleotide metabolism -1 76557 76946
YP_009293505.1 NC_031129_p48 hypothetical protein phrog_872 unknown function unknown function -1 43686 44531
YP_009293466.1 NC_031129_p9 plasmid partition protein A phrog_164 ParA-like partition protein DNA, RNA and nucleotide metabolism 1 5302 6498
YP_009293490.1 NC_031129_p33 tail fiber protein phrog_188 tail fiber assembly protein tail 1 30858 31265
YP_009293478.1 NC_031129_p21 antirepressor protein phrog_63 anti-repressor Ant transcription regulation -1 16768 17814
YP_009293553.1 NC_031129_p96 hypothetical protein phrog_4030 unknown function unknown function -1 84007 84267
YP_009293517.1 NC_031129_p60 transposase phrog_7951 transposase integration and excision -1 58513 61479
YP_009293561.1 NC_031129_p104 morphogenic function protein phrog_4603 alpha-2;3-sialyltransferase other -1 89075 89575
YP_009293524.1 NC_031129_p67 hypothetical protein singleton unknown function unknown function -1 66239 66496
YP_009293521.1 NC_031129_p64 iron outer membrane receptor singleton unknown function unknown function -1 62957 63982
YP_009293475.1 NC_031129_p18 replication protein phrog_108 Lom outer membrane protein other -1 14320 14835
YP_009293572.1 NC_031129_p115 replicative DNA helicase phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism -1 96670 98034
YP_009293467.1 NC_031129_p10 plasmid partition protein B phrog_1146 ParB-like partition protein DNA, RNA and nucleotide metabolism 1 6515 7516
YP_009293537.1 NC_031129_p80 toxin protein phrog_577 Doc-like toxin moron, auxiliary metabolic gene and host takeover -1 75883 76263
YP_009293481.1 NC_031129_p24 morphogenetic protein phrog_1851 PmgC-like head morphogenesis head and packaging 1 19836 20354
YP_009293544.1 NC_031129_p87 hypothetical protein phrog_60 unknown function unknown function -1 79497 80429
YP_009293574.1 NC_031129_p117 tellurite or colicin resistance protein phrog_1470 TciB-like inhibition of cell division or resistance to colicin moron, auxiliary metabolic gene and host takeover -1 98502 98666
YP_009293575.1 NC_031129_p118 tellurite or colicin resistance protein phrog_632 tellurite resistance moron, auxiliary metabolic gene and host takeover -1 98666 99091
YP_009293531.1 NC_031129_p74 primary repressor of lytic function phrog_1678 unknown function unknown function 1 70447 71298
YP_009293533.1 NC_031129_p76 terminase A protein phrog_1711 terminase head and packaging -1 72807 74000
YP_009293488.1 NC_031129_p31 tail fiber structure or assembly protein phrog_2032 tail fiber assembly protein tail 1 28068 28502