Genomic map of Salmonella phage BP12C (NC_031228)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_031228
Definition
Salmonella phage BP12C, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Chivirus; unclassified Chivirus.
DB of origin
REFSEQ
Length
60606
Host Name
Salmonella enterica
Host domain
Bacteria
Is prophage?
undef
Number of proteins
76
%GC
56.39
Number of singletons
2
Number of paralogs
2

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009300940.1 NC_031228_p65 terminase small subunit phrog_141 terminase small subunit head and packaging -1 49246 49815
YP_009300934.1 NC_031228_p59 major capsid protein phrog_29 major head protein head and packaging -1 42416 43480
YP_009300926.1 NC_031228_p51 tape measure protein phrog_2335 tail length tape measure protein tail -1 34326 38621
YP_009300924.1 NC_031228_p49 hypothetical protein phrog_778 tail assembly protein tail -1 31804 32622
YP_009300929.1 NC_031228_p54 hypothetical protein phrog_807 major tail protein with Ig-like domain tail -1 39414 40553
YP_009300888.1 NC_031228_p13 hypothetical protein singleton unknown function unknown function -1 5494 5694
YP_009300880.1 NC_031228_p5 hypothetical protein phrog_10087 unknown function unknown function -1 1533 2702
YP_009300938.1 NC_031228_p63 head-to-tail joining protein phrog_75 head-tail adaptor Ad1 connector -1 46916 47170
YP_009300906.1 NC_031228_p31 hypothetical protein phrog_9301 unknown function unknown function 1 15974 16285
YP_009300896.1 NC_031228_p21 hypothetical protein phrog_6886 unknown function unknown function 1 9754 10494
YP_009300925.1 NC_031228_p50 hypothetical protein phrog_1082 tail assembly protein tail -1 32632 34320
YP_009300901.1 NC_031228_p26 hypothetical protein phrog_9067 unknown function unknown function 1 13822 14016
YP_009300950.1 NC_031228_p75 hypothetical protein phrog_2339 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 59653 59976
YP_009300919.1 NC_031228_p44 hypothetical protein phrog_2448 unknown function unknown function -1 25686 26693
YP_009300920.1 NC_031228_p45 tail fiber protein phrog_7049 tail fiber protein tail -1 26703 27443
YP_009300912.1 NC_031228_p37 hypothetical protein phrog_1026 Rz-like spanin lysis -1 18927 19181
YP_009300943.1 NC_031228_p68 DNA polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism -1 51613 53652
YP_009300945.1 NC_031228_p70 hypothetical protein phrog_69 exonuclease DNA, RNA and nucleotide metabolism -1 54370 55707
YP_009300890.1 NC_031228_p15 hypothetical protein phrog_7942 unknown function unknown function 1 6892 7332
YP_009300899.1 NC_031228_p24 DNA adenine methylase phrog_111 DNA methyltransferase other 1 12244 12930
YP_009300891.1 NC_031228_p16 hypothetical protein phrog_7734 unknown function unknown function 1 7319 7654
YP_009300923.1 NC_031228_p48 hypothetical protein phrog_1180 tail assembly chaperone tail -1 31562 31792
YP_009300918.1 NC_031228_p43 hypothetical protein phrog_2448 unknown function unknown function -1 24713 25675
YP_009300895.1 NC_031228_p20 hypothetical protein phrog_7587 unknown function unknown function 1 9283 9558
YP_009300949.1 NC_031228_p74 primase phrog_1156 DNA primase DNA, RNA and nucleotide metabolism 1 57032 59617
YP_009300876.1 NC_031228_p1 hypothetical protein phrog_8116 unknown function unknown function -1 552 803
YP_009300917.1 NC_031228_p42 hypothetical protein phrog_2448 unknown function unknown function -1 23680 24699
YP_009300908.1 NC_031228_p33 hypothetical protein phrog_8098 unknown function unknown function 1 16736 17449
YP_009300947.1 NC_031228_p72 hypothetical protein phrog_7721 unknown function unknown function -1 56092 56511
YP_009300942.1 NC_031228_p67 hypothetical protein phrog_93 endonuclease DNA, RNA and nucleotide metabolism -1 51324 51611
YP_009300884.1 NC_031228_p9 hypothetical protein phrog_10310 unknown function unknown function -1 3820 4443
YP_009300878.1 NC_031228_p3 hypothetical protein phrog_8059 unknown function unknown function -1 1040 1246
YP_009300935.1 NC_031228_p60 capsid decorator protein phrog_49 head decoration head and packaging -1 43493 43912
YP_009300941.1 NC_031228_p66 helicase phrog_62 DNA helicase DNA, RNA and nucleotide metabolism -1 49802 51277
YP_009300921.1 NC_031228_p46 hypothetical protein phrog_6284 tail protein tail -1 27443 31333
YP_009300897.1 NC_031228_p22 hypothetical protein phrog_8641 unknown function unknown function 1 10491 11147
YP_009300913.1 NC_031228_p38 hypothetical protein phrog_873 endolysin head and packaging -1 19178 19891
YP_009300886.1 NC_031228_p11 hypothetical protein phrog_3199 unknown function unknown function -1 4661 5200
YP_009300894.1 NC_031228_p19 hypothetical protein phrog_7200 unknown function unknown function 1 9045 9278
YP_009300914.1 NC_031228_p39 hypothetical protein phrog_7686 Rz-like spanin lysis -1 19895 20233
YP_009300915.1 NC_031228_p40 hypothetical protein phrog_7226 unknown function unknown function -1 20297 22426
YP_009300881.1 NC_031228_p6 hypothetical protein phrog_8635 unknown function unknown function -1 2828 3049
YP_009300887.1 NC_031228_p12 hypothetical protein phrog_4445 unknown function unknown function -1 5219 5476
YP_009300946.1 NC_031228_p71 hypothetical protein phrog_8318 unknown function unknown function -1 55700 56029
YP_009300900.1 NC_031228_p25 hypothetical protein phrog_8209 unknown function unknown function 1 13005 13814
YP_009300882.1 NC_031228_p7 hypothetical protein phrog_9514 unknown function unknown function -1 3046 3594
YP_009300877.1 NC_031228_p2 hypothetical protein phrog_7646 unknown function unknown function -1 796 1047
YP_009300889.1 NC_031228_p14 hypothetical protein phrog_6647 unknown function unknown function 1 6419 6820
YP_009300933.1 NC_031228_p58 hypothetical protein phrog_7559 unknown function unknown function -1 42061 42354
YP_009300936.1 NC_031228_p61 prohead protease ClpP phrog_53 head maturation protease head and packaging -1 43927 45213
YP_009300944.1 NC_031228_p69 hypothetical protein phrog_112 Gp2.5-like ssDNA binding protein and ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 53719 54315
YP_009300905.1 NC_031228_p30 hypothetical protein phrog_3012 unknown function unknown function 1 15696 15977
YP_009300883.1 NC_031228_p8 hypothetical protein phrog_7744 unknown function unknown function -1 3605 3799
YP_009300879.1 NC_031228_p4 hypothetical protein phrog_3786 unknown function unknown function -1 1249 1521
YP_009300928.1 NC_031228_p53 hypothetical protein phrog_5260 tail protein tail -1 38856 39317
YP_009300932.1 NC_031228_p57 hypothetical protein phrog_4858 unknown function unknown function -1 41693 42058
YP_009300898.1 NC_031228_p23 hypothetical protein phrog_8386 unknown function unknown function 1 11144 12244
YP_009300931.1 NC_031228_p56 hypothetical protein phrog_27 tail completion or Neck1 protein connector -1 41067 41693
YP_009300922.1 NC_031228_p47 hypothetical protein phrog_1196 tail assembly chaperone tail -1 31323 31562
YP_009300907.1 NC_031228_p32 hypothetical protein phrog_8264 unknown function unknown function 1 16282 16734
YP_009300904.1 NC_031228_p29 hypothetical protein phrog_9072 thymidylate synthase complementing protein DNA, RNA and nucleotide metabolism 1 15106 15615
YP_009300951.1 NC_031228_p76 hypothetical protein singleton unknown function unknown function -1 60043 60198
YP_009300911.1 NC_031228_p36 hypothetical protein phrog_1275 Rz-like spanin lysis -1 18797 19000
YP_009300927.1 NC_031228_p52 hypothetical protein phrog_9221 tail length tape measure protein tail -1 38614 38811
YP_009300939.1 NC_031228_p64 terminase large subunit phrog_15 terminase large subunit head and packaging -1 47181 49256
YP_009300909.1 NC_031228_p34 hypothetical protein phrog_424 phosphoadenosine phosphosulfate reductase moron, auxiliary metabolic gene and host takeover 1 17439 18338
YP_009300937.1 NC_031228_p62 portal protein phrog_21 portal protein head and packaging -1 45240 46919
YP_009300885.1 NC_031228_p10 hypothetical protein phrog_2385 unknown function unknown function -1 4446 4640
YP_009300902.1 NC_031228_p27 hypothetical protein phrog_8705 unknown function unknown function 1 13989 14228
YP_009300930.1 NC_031228_p55 hypothetical protein phrog_5078 tail terminator connector -1 40567 41070
YP_009300916.1 NC_031228_p41 hypothetical protein phrog_10924 unknown function unknown function -1 22436 23665
YP_009300892.1 NC_031228_p17 hypothetical protein phrog_7965 unknown function unknown function 1 7641 7982
YP_009300910.1 NC_031228_p35 hypothetical protein phrog_355 nucleoside 2-deoxyribosyltransferase DNA, RNA and nucleotide metabolism 1 18335 18796
YP_009300893.1 NC_031228_p18 exonuclease RdgC phrog_724 exonuclease recombination-associated DNA, RNA and nucleotide metabolism 1 7963 9042
YP_009300903.1 NC_031228_p28 hypothetical protein phrog_6247 DNA topoisomerase DNA, RNA and nucleotide metabolism 1 14225 15112
YP_009300948.1 NC_031228_p73 hypothetical protein phrog_7401 unknown function unknown function 1 56754 57035