Genomic map of Gordonia phage Kita (NC_031233)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_031233
Definition
Gordonia phage Kita, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Nymbaxtervirinae; Nymphadoravirus.
DB of origin
REFSEQ
Length
50346
Host Name
Gordonia terrae
Host domain
Bacteria
Is prophage?
undef
Number of proteins
80
%GC
66.66
Number of singletons
6
Number of paralogs
2

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009301371.1 NC_031233_p10 hypothetical protein phrog_556 minor head protein head and packaging 1 7709 8038
YP_009301407.1 NC_031233_p46 HTH DNA-binding protein phrog_6463 HTH DNA binding protein DNA, RNA and nucleotide metabolism 1 34242 34610
YP_009301430.1 NC_031233_p69 HTH DNA-binding protein phrog_2149 replication initiation protein DNA, RNA and nucleotide metabolism 1 44757 45833
YP_009301377.1 NC_031233_p16 hypothetical protein phrog_2320 unknown function unknown function -1 10161 10478
YP_009301363.1 NC_031233_p2 terminase large subunit phrog_9 terminase large subunit head and packaging 1 498 2222
YP_009301368.1 NC_031233_p7 head-to-tail connector protein phrog_9538 head-tail connector protein connector 1 6430 6777
YP_009301434.1 NC_031233_p73 hypothetical protein phrog_14446 unknown function unknown function 1 46928 47431
YP_009301381.1 NC_031233_p20 lysin A phrog_1512 endolysin lysis 1 19391 20098
YP_009301367.1 NC_031233_p6 major capsid protein phrog_10 major head protein head and packaging 1 4693 6342
YP_009301428.1 NC_031233_p67 hypothetical protein singleton unknown function unknown function -1 44272 44499
YP_009301364.1 NC_031233_p3 hypothetical protein phrog_4810 unknown function unknown function 1 2204 2380
YP_009301418.1 NC_031233_p57 exonuclease phrog_412 exonuclease VIII DNA, RNA and nucleotide metabolism 1 38849 39724
YP_009301438.1 NC_031233_p77 hypothetical protein phrog_9543 unknown function unknown function 1 48949 49275
YP_009301385.1 NC_031233_p24 hypothetical protein phrog_4565 unknown function unknown function 1 21502 21753
YP_009301383.1 NC_031233_p22 lysin A phrog_3084 endolysin lysis 1 20294 21205
YP_009301373.1 NC_031233_p12 major tail protein phrog_3884 major tail protein tail 1 8478 8990
YP_009301379.1 NC_031233_p18 minor tail protein phrog_106 minor tail protein tail 1 16949 17776
YP_009301390.1 NC_031233_p29 hypothetical protein phrog_13955 unknown function unknown function 1 24428 24808
YP_009301392.1 NC_031233_p31 hypothetical protein phrog_7114 minor tail protein tail 1 27060 27656
YP_009301376.2 NC_031233_p14 tail assembly chaperone phrog_3860 tail assembly chaperone tail 1 9285 10189
YP_009301366.1 NC_031233_p5 capsid maturation protease phrog_80 head maturation protease head and packaging 1 3785 4696
YP_009301400.1 NC_031233_p39 hypothetical protein singleton unknown function unknown function -1 29914 30294
YP_009301362.1 NC_031233_p1 terminase small subunit phrog_83 terminase small subunit head and packaging 1 56 520
YP_009301410.1 NC_031233_p49 antirepressor protein phrog_130 anti-repressor Ant transcription regulation 1 35359 36195
YP_009301411.1 NC_031233_p50 hypothetical protein phrog_7723 unknown function unknown function 1 36192 36419
YP_009301415.1 NC_031233_p54 hypothetical protein phrog_210 unknown function unknown function 1 37337 38188
YP_009301401.1 NC_031233_p40 integrase phrog_1 integrase integration and excision 1 30461 31654
YP_009301436.1 NC_031233_p75 hypothetical protein phrog_1467 unknown function unknown function 1 47955 48629
YP_009301413.1 NC_031233_p52 hypothetical protein phrog_9213 unknown function unknown function 1 36703 36906
YP_009301408.1 NC_031233_p47 hypothetical protein phrog_16839 unknown function unknown function 1 34607 34765
YP_009301406.1 NC_031233_p45 immunity repressor phrog_6288 unknown function unknown function -1 33219 34166
YP_009301427.1 NC_031233_p66 hypothetical protein phrog_16050 unknown function unknown function 1 44018 44269
YP_009301403.1 NC_031233_p42 hypothetical protein phrog_19414 antitoxin from a toxin-antitoxin system moron, auxiliary metabolic gene and host takeover 1 32127 32441
YP_009301429.1 NC_031233_p68 hypothetical protein phrog_10621 unknown function unknown function 1 44558 44767
YP_009301384.1 NC_031233_p23 membrane protein phrog_3428 holin lysis 1 21208 21498
YP_009301440.1 NC_031233_p79 hypothetical protein phrog_10381 unknown function unknown function 1 49651 49959
YP_009301437.1 NC_031233_p76 HTH DNA-binding domain protein phrog_2474 MerR-like transcriptional regulator transcription regulation 1 48626 48952
YP_009301433.1 NC_031233_p72 resolvase phrog_34 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 46566 46931
YP_009301399.1 NC_031233_p38 hypothetical protein singleton unknown function unknown function -1 29595 29765
YP_009301396.1 NC_031233_p35 hypothetical protein phrog_24196 unknown function unknown function 1 29024 29104
YP_009301365.1 NC_031233_p4 portal protein phrog_12 portal protein head and packaging 1 2377 3795
YP_009301397.1 NC_031233_p36 hypothetical protein phrog_597 DNA binding protein DNA, RNA and nucleotide metabolism -1 29127 29363
YP_009301387.1 NC_031233_p26 membrane protein phrog_3798 unknown function unknown function 1 21932 22306
YP_009301414.1 NC_031233_p53 hypothetical protein phrog_204 unknown function unknown function 1 36911 37333
YP_009301412.1 NC_031233_p51 hypothetical protein phrog_1840 excisionase integration and excision 1 36416 36706
YP_009301417.1 NC_031233_p56 hypothetical protein phrog_2857 tail fiber protein tail 1 38547 38852
YP_009301431.1 NC_031233_p70 hypothetical protein phrog_6055 unknown function unknown function 1 45830 46324
YP_009301391.1 NC_031233_p30 minor tail protein phrog_8780 minor tail protein tail 1 24786 27056
YP_009301432.1 NC_031233_p71 hypothetical protein phrog_14741 unknown function unknown function 1 46321 46569
YP_009301425.1 NC_031233_p64 methylase phrog_116 DNA methyltransferase other 1 42172 43749
YP_009301435.1 NC_031233_p74 hypothetical protein phrog_37625 unknown function unknown function 1 47425 47958
YP_009301388.1 NC_031233_p27 lysin B phrog_102 endolysin lysis 1 22303 22923
YP_009301402.1 NC_031233_p41 hypothetical protein phrog_21927 unknown function unknown function -1 31669 32043
YP_009301386.1 NC_031233_p25 membrane protein phrog_17624 membrane protein moron, auxiliary metabolic gene and host takeover 1 21750 21935
YP_009301389.1 NC_031233_p28 minor tail protein phrog_2689 minor tail protein tail 1 22923 24428
YP_009301409.1 NC_031233_p48 hypothetical protein phrog_17511 unknown function unknown function 1 34762 35310
YP_009301423.1 NC_031233_p62 activating signal cointegrator protein phrog_986 RNA-binding protein DNA, RNA and nucleotide metabolism 1 41688 42038
YP_009301404.1 NC_031233_p43 hypothetical protein phrog_5316 unknown function unknown function -1 32519 32740
YP_009301398.1 NC_031233_p37 hypothetical protein singleton unknown function unknown function -1 29350 29598
YP_009301374.1 NC_031233_p13 hypothetical protein phrog_17334 unknown function unknown function 1 9049 9222
YP_009301421.1 NC_031233_p60 hypothetical protein phrog_10709 unknown function unknown function 1 41312 41494
YP_009301370.1 NC_031233_p9 head-to-tail connector protein phrog_3881 head-tail connector protein connector 1 7344 7697
YP_009301395.1 NC_031233_p34 hypothetical protein singleton unknown function unknown function 1 28688 28963
YP_009301422.1 NC_031233_p61 hypothetical protein phrog_20668 unknown function unknown function 1 41491 41691
YP_009301382.1 NC_031233_p21 hypothetical protein phrog_23761 unknown function unknown function 1 20095 20292
YP_009301439.1 NC_031233_p78 hypothetical protein phrog_17450 unknown function unknown function 1 49262 49651
YP_009301420.1 NC_031233_p59 hypothetical protein phrog_15664 unknown function unknown function 1 40866 41315
YP_009301393.1 NC_031233_p32 hypothetical protein phrog_87 metallo-protease other 1 27740 28276
YP_009301405.1 NC_031233_p44 hypothetical protein phrog_87 metallo-protease other -1 32740 33156
YP_009301380.1 NC_031233_p19 minor tail protein phrog_110 minor tail protein tail 1 17773 19371
YP_009301375.1 NC_031233_p15 tail assembly chaperone phrog_3860 tail assembly chaperone tail 1 9285 9932
YP_009301372.1 NC_031233_p11 head-to-tail connector protein phrog_2595 head-tail connector protein connector 1 8035 8475
YP_009301369.1 NC_031233_p8 head-to-tail connector protein phrog_442 head-tail adaptor connector 1 6774 7319
YP_009301441.1 NC_031233_p80 HNH endonuclease phrog_589 HNH endonuclease DNA, RNA and nucleotide metabolism 1 49959 50294
YP_009301419.1 NC_031233_p58 ssDNA binding protein phrog_4171 RecT-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 39721 40869
YP_009301426.1 NC_031233_p65 hypothetical protein phrog_19263 unknown function unknown function 1 43749 44021
YP_009301394.1 NC_031233_p33 hypothetical protein singleton unknown function unknown function 1 28273 28632
YP_009301416.1 NC_031233_p55 hypothetical protein phrog_6877 unknown function unknown function 1 38185 38547
YP_009301378.1 NC_031233_p17 tape measure protein phrog_7025 tail length tape measure protein tail 1 10512 16949
YP_009301424.1 NC_031233_p63 hypothetical protein phrog_7793 unknown function unknown function 1 42035 42175