| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_031233 |
Definition |
Gordonia phage Kita, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Nymbaxtervirinae; Nymphadoravirus. |
DB of origin |
REFSEQ |
Length |
50346 |
Host Name |
Gordonia terrae |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
80 |
%GC |
66.66 |
Number of singletons |
6 |
Number of paralogs |
2 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009301371.1 | NC_031233_p10 | hypothetical protein | phrog_556 | minor head protein | head and packaging | 1 | 7709 | 8038 |
| YP_009301407.1 | NC_031233_p46 | HTH DNA-binding protein | phrog_6463 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 34242 | 34610 |
| YP_009301430.1 | NC_031233_p69 | HTH DNA-binding protein | phrog_2149 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 44757 | 45833 |
| YP_009301377.1 | NC_031233_p16 | hypothetical protein | phrog_2320 | unknown function | unknown function | -1 | 10161 | 10478 |
| YP_009301363.1 | NC_031233_p2 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 498 | 2222 |
| YP_009301368.1 | NC_031233_p7 | head-to-tail connector protein | phrog_9538 | head-tail connector protein | connector | 1 | 6430 | 6777 |
| YP_009301434.1 | NC_031233_p73 | hypothetical protein | phrog_14446 | unknown function | unknown function | 1 | 46928 | 47431 |
| YP_009301381.1 | NC_031233_p20 | lysin A | phrog_1512 | endolysin | lysis | 1 | 19391 | 20098 |
| YP_009301367.1 | NC_031233_p6 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 4693 | 6342 |
| YP_009301428.1 | NC_031233_p67 | hypothetical protein | singleton | unknown function | unknown function | -1 | 44272 | 44499 |
| YP_009301364.1 | NC_031233_p3 | hypothetical protein | phrog_4810 | unknown function | unknown function | 1 | 2204 | 2380 |
| YP_009301418.1 | NC_031233_p57 | exonuclease | phrog_412 | exonuclease VIII | DNA, RNA and nucleotide metabolism | 1 | 38849 | 39724 |
| YP_009301438.1 | NC_031233_p77 | hypothetical protein | phrog_9543 | unknown function | unknown function | 1 | 48949 | 49275 |
| YP_009301385.1 | NC_031233_p24 | hypothetical protein | phrog_4565 | unknown function | unknown function | 1 | 21502 | 21753 |
| YP_009301383.1 | NC_031233_p22 | lysin A | phrog_3084 | endolysin | lysis | 1 | 20294 | 21205 |
| YP_009301373.1 | NC_031233_p12 | major tail protein | phrog_3884 | major tail protein | tail | 1 | 8478 | 8990 |
| YP_009301379.1 | NC_031233_p18 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 16949 | 17776 |
| YP_009301390.1 | NC_031233_p29 | hypothetical protein | phrog_13955 | unknown function | unknown function | 1 | 24428 | 24808 |
| YP_009301392.1 | NC_031233_p31 | hypothetical protein | phrog_7114 | minor tail protein | tail | 1 | 27060 | 27656 |
| YP_009301376.2 | NC_031233_p14 | tail assembly chaperone | phrog_3860 | tail assembly chaperone | tail | 1 | 9285 | 10189 |
| YP_009301366.1 | NC_031233_p5 | capsid maturation protease | phrog_80 | head maturation protease | head and packaging | 1 | 3785 | 4696 |
| YP_009301400.1 | NC_031233_p39 | hypothetical protein | singleton | unknown function | unknown function | -1 | 29914 | 30294 |
| YP_009301362.1 | NC_031233_p1 | terminase small subunit | phrog_83 | terminase small subunit | head and packaging | 1 | 56 | 520 |
| YP_009301410.1 | NC_031233_p49 | antirepressor protein | phrog_130 | anti-repressor Ant | transcription regulation | 1 | 35359 | 36195 |
| YP_009301411.1 | NC_031233_p50 | hypothetical protein | phrog_7723 | unknown function | unknown function | 1 | 36192 | 36419 |
| YP_009301415.1 | NC_031233_p54 | hypothetical protein | phrog_210 | unknown function | unknown function | 1 | 37337 | 38188 |
| YP_009301401.1 | NC_031233_p40 | integrase | phrog_1 | integrase | integration and excision | 1 | 30461 | 31654 |
| YP_009301436.1 | NC_031233_p75 | hypothetical protein | phrog_1467 | unknown function | unknown function | 1 | 47955 | 48629 |
| YP_009301413.1 | NC_031233_p52 | hypothetical protein | phrog_9213 | unknown function | unknown function | 1 | 36703 | 36906 |
| YP_009301408.1 | NC_031233_p47 | hypothetical protein | phrog_16839 | unknown function | unknown function | 1 | 34607 | 34765 |
| YP_009301406.1 | NC_031233_p45 | immunity repressor | phrog_6288 | unknown function | unknown function | -1 | 33219 | 34166 |
| YP_009301427.1 | NC_031233_p66 | hypothetical protein | phrog_16050 | unknown function | unknown function | 1 | 44018 | 44269 |
| YP_009301403.1 | NC_031233_p42 | hypothetical protein | phrog_19414 | antitoxin from a toxin-antitoxin system | moron, auxiliary metabolic gene and host takeover | 1 | 32127 | 32441 |
| YP_009301429.1 | NC_031233_p68 | hypothetical protein | phrog_10621 | unknown function | unknown function | 1 | 44558 | 44767 |
| YP_009301384.1 | NC_031233_p23 | membrane protein | phrog_3428 | holin | lysis | 1 | 21208 | 21498 |
| YP_009301440.1 | NC_031233_p79 | hypothetical protein | phrog_10381 | unknown function | unknown function | 1 | 49651 | 49959 |
| YP_009301437.1 | NC_031233_p76 | HTH DNA-binding domain protein | phrog_2474 | MerR-like transcriptional regulator | transcription regulation | 1 | 48626 | 48952 |
| YP_009301433.1 | NC_031233_p72 | resolvase | phrog_34 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 46566 | 46931 |
| YP_009301399.1 | NC_031233_p38 | hypothetical protein | singleton | unknown function | unknown function | -1 | 29595 | 29765 |
| YP_009301396.1 | NC_031233_p35 | hypothetical protein | phrog_24196 | unknown function | unknown function | 1 | 29024 | 29104 |
| YP_009301365.1 | NC_031233_p4 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 2377 | 3795 |
| YP_009301397.1 | NC_031233_p36 | hypothetical protein | phrog_597 | DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 29127 | 29363 |
| YP_009301387.1 | NC_031233_p26 | membrane protein | phrog_3798 | unknown function | unknown function | 1 | 21932 | 22306 |
| YP_009301414.1 | NC_031233_p53 | hypothetical protein | phrog_204 | unknown function | unknown function | 1 | 36911 | 37333 |
| YP_009301412.1 | NC_031233_p51 | hypothetical protein | phrog_1840 | excisionase | integration and excision | 1 | 36416 | 36706 |
| YP_009301417.1 | NC_031233_p56 | hypothetical protein | phrog_2857 | tail fiber protein | tail | 1 | 38547 | 38852 |
| YP_009301431.1 | NC_031233_p70 | hypothetical protein | phrog_6055 | unknown function | unknown function | 1 | 45830 | 46324 |
| YP_009301391.1 | NC_031233_p30 | minor tail protein | phrog_8780 | minor tail protein | tail | 1 | 24786 | 27056 |
| YP_009301432.1 | NC_031233_p71 | hypothetical protein | phrog_14741 | unknown function | unknown function | 1 | 46321 | 46569 |
| YP_009301425.1 | NC_031233_p64 | methylase | phrog_116 | DNA methyltransferase | other | 1 | 42172 | 43749 |
| YP_009301435.1 | NC_031233_p74 | hypothetical protein | phrog_37625 | unknown function | unknown function | 1 | 47425 | 47958 |
| YP_009301388.1 | NC_031233_p27 | lysin B | phrog_102 | endolysin | lysis | 1 | 22303 | 22923 |
| YP_009301402.1 | NC_031233_p41 | hypothetical protein | phrog_21927 | unknown function | unknown function | -1 | 31669 | 32043 |
| YP_009301386.1 | NC_031233_p25 | membrane protein | phrog_17624 | membrane protein | moron, auxiliary metabolic gene and host takeover | 1 | 21750 | 21935 |
| YP_009301389.1 | NC_031233_p28 | minor tail protein | phrog_2689 | minor tail protein | tail | 1 | 22923 | 24428 |
| YP_009301409.1 | NC_031233_p48 | hypothetical protein | phrog_17511 | unknown function | unknown function | 1 | 34762 | 35310 |
| YP_009301423.1 | NC_031233_p62 | activating signal cointegrator protein | phrog_986 | RNA-binding protein | DNA, RNA and nucleotide metabolism | 1 | 41688 | 42038 |
| YP_009301404.1 | NC_031233_p43 | hypothetical protein | phrog_5316 | unknown function | unknown function | -1 | 32519 | 32740 |
| YP_009301398.1 | NC_031233_p37 | hypothetical protein | singleton | unknown function | unknown function | -1 | 29350 | 29598 |
| YP_009301374.1 | NC_031233_p13 | hypothetical protein | phrog_17334 | unknown function | unknown function | 1 | 9049 | 9222 |
| YP_009301421.1 | NC_031233_p60 | hypothetical protein | phrog_10709 | unknown function | unknown function | 1 | 41312 | 41494 |
| YP_009301370.1 | NC_031233_p9 | head-to-tail connector protein | phrog_3881 | head-tail connector protein | connector | 1 | 7344 | 7697 |
| YP_009301395.1 | NC_031233_p34 | hypothetical protein | singleton | unknown function | unknown function | 1 | 28688 | 28963 |
| YP_009301422.1 | NC_031233_p61 | hypothetical protein | phrog_20668 | unknown function | unknown function | 1 | 41491 | 41691 |
| YP_009301382.1 | NC_031233_p21 | hypothetical protein | phrog_23761 | unknown function | unknown function | 1 | 20095 | 20292 |
| YP_009301439.1 | NC_031233_p78 | hypothetical protein | phrog_17450 | unknown function | unknown function | 1 | 49262 | 49651 |
| YP_009301420.1 | NC_031233_p59 | hypothetical protein | phrog_15664 | unknown function | unknown function | 1 | 40866 | 41315 |
| YP_009301393.1 | NC_031233_p32 | hypothetical protein | phrog_87 | metallo-protease | other | 1 | 27740 | 28276 |
| YP_009301405.1 | NC_031233_p44 | hypothetical protein | phrog_87 | metallo-protease | other | -1 | 32740 | 33156 |
| YP_009301380.1 | NC_031233_p19 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 17773 | 19371 |
| YP_009301375.1 | NC_031233_p15 | tail assembly chaperone | phrog_3860 | tail assembly chaperone | tail | 1 | 9285 | 9932 |
| YP_009301372.1 | NC_031233_p11 | head-to-tail connector protein | phrog_2595 | head-tail connector protein | connector | 1 | 8035 | 8475 |
| YP_009301369.1 | NC_031233_p8 | head-to-tail connector protein | phrog_442 | head-tail adaptor | connector | 1 | 6774 | 7319 |
| YP_009301441.1 | NC_031233_p80 | HNH endonuclease | phrog_589 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 49959 | 50294 |
| YP_009301419.1 | NC_031233_p58 | ssDNA binding protein | phrog_4171 | RecT-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 39721 | 40869 |
| YP_009301426.1 | NC_031233_p65 | hypothetical protein | phrog_19263 | unknown function | unknown function | 1 | 43749 | 44021 |
| YP_009301394.1 | NC_031233_p33 | hypothetical protein | singleton | unknown function | unknown function | 1 | 28273 | 28632 |
| YP_009301416.1 | NC_031233_p55 | hypothetical protein | phrog_6877 | unknown function | unknown function | 1 | 38185 | 38547 |
| YP_009301378.1 | NC_031233_p17 | tape measure protein | phrog_7025 | tail length tape measure protein | tail | 1 | 10512 | 16949 |
| YP_009301424.1 | NC_031233_p63 | hypothetical protein | phrog_7793 | unknown function | unknown function | 1 | 42035 | 42175 |