Genomic map of Gordonia phage Emalyn (NC_031234)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_031234
Definition
Gordonia phage Emalyn, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Emalynvirus; Gordonia virus Emalyn.
DB of origin
REFSEQ
Length
43982
Host Name
Gordonia terrae
Host domain
Bacteria
Is prophage?
undef
Number of proteins
67
%GC
61.21
Number of singletons
9
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009301462.1 NC_031234_p21 membrane protein phrog_3428 holin lysis 1 18672 18953
YP_009301507.1 NC_031234_p66 hypothetical protein phrog_26569 unknown function unknown function 1 43145 43507
YP_009301469.1 NC_031234_p28 hypothetical protein singleton unknown function unknown function -1 22850 23098
YP_009301495.1 NC_031234_p54 hypothetical protein phrog_17534 unknown function unknown function -1 38042 38221
YP_009301467.1 NC_031234_p26 hypothetical protein phrog_21962 tail protein tail 1 21242 22129
YP_009301456.1 NC_031234_p15 tape measure protein phrog_4197 tail length tape measure protein tail 1 9356 14068
YP_009301485.1 NC_031234_p44 lysin B phrog_102 endolysin lysis -1 32062 32901
YP_009301459.1 NC_031234_p18 hypothetical protein phrog_8122 minor tail protein tail 1 16747 17136
YP_009301461.1 NC_031234_p20 lysin A phrog_3084 endolysin lysis 1 17725 18675
YP_009301494.1 NC_031234_p53 hypothetical protein phrog_24818 unknown function unknown function -1 37824 38042
YP_009301498.1 NC_031234_p57 DNA recombinase phrog_3123 unknown function unknown function 1 38879 40876
YP_009301497.1 NC_031234_p56 hypothetical protein phrog_13148 unknown function unknown function -1 38408 38851
YP_009301453.1 NC_031234_p12 major tail subunit phrog_117 major tail protein tail 1 7661 8509
YP_009301444.1 NC_031234_p3 terminase phrog_9 terminase large subunit head and packaging 1 805 2487
YP_009301451.1 NC_031234_p10 head-to-tail connector protein phrog_387 neck protein connector 1 6986 7255
YP_009301452.1 NC_031234_p11 head-to-tail connector protein phrog_123 tail terminator connector 1 7242 7652
YP_009301496.1 NC_031234_p55 hypothetical protein singleton unknown function unknown function -1 38208 38411
YP_009301448.1 NC_031234_p7 major capsid protein phrog_10 major head protein head and packaging 1 5103 6074
YP_009301499.1 NC_031234_p58 hypothetical protein singleton unknown function unknown function 1 40920 41090
YP_009301482.1 NC_031234_p41 helicase phrog_1218 exonuclease DNA, RNA and nucleotide metabolism -1 28200 29228
YP_009301445.1 NC_031234_p4 portal protein phrog_104 portal protein head and packaging 1 2484 3938
YP_009301449.1 NC_031234_p8 head-to-tail connector protein phrog_1290 head-tail adaptor connector 1 6146 6655
YP_009301475.1 NC_031234_p34 hypothetical protein phrog_16498 unknown function unknown function -1 25235 25600
YP_009301463.1 NC_031234_p22 membrane protein phrog_5552 membrane protein moron, auxiliary metabolic gene and host takeover 1 18976 19464
YP_009301501.1 NC_031234_p60 hypothetical protein singleton unknown function unknown function 1 41497 41652
YP_009301447.1 NC_031234_p6 scaffolding protein phrog_1793 head scaffolding protein head and packaging 1 4622 5080
YP_009301506.1 NC_031234_p65 hypothetical protein phrog_25464 unknown function unknown function 1 42894 43148
YP_009301483.1 NC_031234_p42 DNA polymerase I phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism -1 29225 31612
YP_009301457.1 NC_031234_p16 minor tail protein phrog_106 minor tail protein tail 1 14065 15036
YP_009301488.1 NC_031234_p47 hypothetical protein phrog_13667 unknown function unknown function -1 33898 34815
YP_009301465.1 NC_031234_p24 hypothetical protein phrog_7719 minor tail protein tail 1 19777 20889
YP_009301502.1 NC_031234_p61 hypothetical protein phrog_19638 unknown function unknown function 1 41662 41973
YP_009301464.1 NC_031234_p23 hypothetical protein phrog_20118 unknown function unknown function 1 19469 19777
YP_009301490.1 NC_031234_p49 nucleotide pyrophosphohydrolase phrog_12184 nucleotide pyrophosphohydrolase other -1 35068 35532
YP_009301503.1 NC_031234_p62 hypothetical protein phrog_16535 unknown function unknown function 1 41970 42161
YP_009301486.1 NC_031234_p45 hypothetical protein phrog_27770 unknown function unknown function -1 32898 33059
YP_009301479.1 NC_031234_p38 hypothetical protein singleton unknown function unknown function -1 26646 26750
YP_009301481.1 NC_031234_p40 DNA recombinase phrog_124 Sak4-like ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 27339 28151
YP_009301460.1 NC_031234_p19 lysin A phrog_1512 endolysin lysis 1 17133 17723
YP_009301500.1 NC_031234_p59 hypothetical protein phrog_22617 unknown function unknown function 1 41105 41500
YP_009301458.1 NC_031234_p17 minor tail protein phrog_110 minor tail protein tail 1 15033 16727
YP_009301489.1 NC_031234_p48 hypothetical protein phrog_1581 unknown function unknown function -1 34815 35066
YP_009301493.1 NC_031234_p52 helicase phrog_62 DNA helicase DNA, RNA and nucleotide metabolism -1 36349 37827
YP_009301480.1 NC_031234_p39 hypothetical protein phrog_14876 DNA polymerase DNA, RNA and nucleotide metabolism -1 26793 27338
YP_009301470.1 NC_031234_p29 hypothetical protein singleton unknown function unknown function -1 23135 23269
YP_009301466.1 NC_031234_p25 hypothetical protein phrog_1126 unknown function unknown function 1 20900 21238
YP_009301491.1 NC_031234_p50 kinase phrog_761 thymidylate kinase other -1 35529 36041
YP_009301476.1 NC_031234_p35 HTH DNA-binding domain protein phrog_15118 HTH DNA binding protein DNA, RNA and nucleotide metabolism 1 25819 26214
YP_009301468.1 NC_031234_p27 hypothetical protein phrog_356 minor tail protein tail 1 22133 22771
YP_009301487.1 NC_031234_p46 thymidylate synthase phrog_160 thymidylate synthase DNA, RNA and nucleotide metabolism -1 33056 33901
YP_009301472.1 NC_031234_p31 hypothetical protein singleton unknown function unknown function -1 23925 24077
YP_009301508.1 NC_031234_p67 HNH endonuclease phrog_333 HNH endonuclease DNA, RNA and nucleotide metabolism 1 43687 43962
YP_009301505.1 NC_031234_p64 hypothetical protein phrog_24250 unknown function unknown function 1 42590 42934
YP_009301446.1 NC_031234_p5 capsid maturation protease phrog_193 head maturation protease head and packaging 1 3913 4572
YP_009301455.1 NC_031234_p14 tail assembly chaperone phrog_8595 tail assembly chaperone tail 1 8612 8905
YP_009301484.1 NC_031234_p43 nucleoside deaminase phrog_174 dCMP deaminase DNA, RNA and nucleotide metabolism -1 31614 32069
YP_009301443.1 NC_031234_p2 hypothetical protein phrog_1375 unknown function unknown function 1 534 692
YP_009301492.1 NC_031234_p51 hypothetical protein phrog_23484 unknown function unknown function -1 36038 36352
YP_009301454.1 NC_031234_p13 tail assembly chaperone phrog_1326 tail assembly chaperone tail 1 8612 9366
YP_009301504.1 NC_031234_p63 hypothetical protein phrog_16564 unknown function unknown function 1 42151 42582
YP_009301477.1 NC_031234_p36 hypothetical protein phrog_26548 unknown function unknown function 1 26211 26306
YP_009301450.1 NC_031234_p9 head-to-tail connector protein phrog_763 head-tail adaptor connector 1 6652 6993
YP_009301478.1 NC_031234_p37 exonuclease singleton unknown function unknown function -1 26362 26583
YP_009301474.1 NC_031234_p33 hypothetical protein singleton unknown function unknown function 1 24936 25109
YP_009301471.1 NC_031234_p30 protease phrog_1006 unknown function unknown function -1 23318 23911
YP_009301473.1 NC_031234_p32 hypothetical protein phrog_18656 unknown function unknown function -1 24137 24769
YP_009301442.1 NC_031234_p1 hypothetical protein phrog_226 minor tail protein tail 1 52 531