| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_031237 |
Definition |
Gordonia phage Obliviate, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
49286 |
Host Name |
Gordonia terrae |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
80 |
%GC |
67.53 |
Number of singletons |
4 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009301816.1 | NC_031237_p73 | hypothetical protein | phrog_11256 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 44695 | 45894 |
| YP_009301806.1 | NC_031237_p63 | hypothetical protein | phrog_11360 | unknown function | unknown function | 1 | 40666 | 40884 |
| YP_009301822.1 | NC_031237_p79 | hypothetical protein | phrog_1138 | unknown function | unknown function | 1 | 48067 | 48606 |
| YP_009301765.1 | NC_031237_p22 | hypothetical protein | phrog_4511 | unknown function | unknown function | 1 | 20176 | 20499 |
| YP_009301803.1 | NC_031237_p60 | hypothetical protein | phrog_10784 | membrane protein | moron, auxiliary metabolic gene and host takeover | 1 | 39523 | 39705 |
| YP_009301783.1 | NC_031237_p40 | hypothetical protein | phrog_8218 | unknown function | unknown function | 1 | 31641 | 31805 |
| YP_009301788.1 | NC_031237_p45 | hypothetical protein | singleton | unknown function | unknown function | 1 | 32818 | 33150 |
| YP_009301766.1 | NC_031237_p23 | membrane protein | phrog_37077 | unknown function | unknown function | 1 | 20496 | 20726 |
| YP_009301793.1 | NC_031237_p50 | hypothetical protein | phrog_1622 | unknown function | unknown function | 1 | 34448 | 34762 |
| YP_009301755.1 | NC_031237_p12 | head-to-tail connector protein | phrog_123 | tail terminator | connector | 1 | 7923 | 8342 |
| YP_009301756.1 | NC_031237_p13 | major tail protein | phrog_117 | major tail protein | tail | 1 | 8445 | 9086 |
| YP_009301753.1 | NC_031237_p10 | head-to-tail connector protein | phrog_9658 | head-tail connector protein | connector | 1 | 7359 | 7646 |
| YP_009301808.1 | NC_031237_p65 | hypothetical protein | phrog_22267 | transcriptional regulator WhiB-like | transcription regulation | 1 | 41567 | 41860 |
| YP_009301768.1 | NC_031237_p25 | lysin B | phrog_102 | endolysin | lysis | 1 | 21074 | 21871 |
| YP_009301763.1 | NC_031237_p20 | lysin A | phrog_3084 | endolysin | lysis | 1 | 18810 | 19721 |
| YP_009301781.1 | NC_031237_p38 | immunity repressor | phrog_2328 | transcriptional repressor | transcription regulation | -1 | 30835 | 31257 |
| YP_009301770.1 | NC_031237_p27 | minor tail protein | phrog_4120 | minor tail protein | tail | 1 | 22235 | 23302 |
| YP_009301764.1 | NC_031237_p21 | membrane protein | phrog_443 | holin | lysis | 1 | 19724 | 20176 |
| YP_009301809.1 | NC_031237_p66 | hypothetical protein | singleton | unknown function | unknown function | 1 | 41847 | 42359 |
| YP_009301815.1 | NC_031237_p72 | hypothetical protein | phrog_27386 | unknown function | unknown function | 1 | 44537 | 44698 |
| YP_009301820.1 | NC_031237_p77 | hypothetical protein | phrog_908 | unknown function | unknown function | 1 | 46932 | 47708 |
| YP_009301782.1 | NC_031237_p39 | excise | phrog_66 | excisionase and transcriptional regulator | integration and excision | 1 | 31330 | 31524 |
| YP_009301769.1 | NC_031237_p26 | hypothetical protein | phrog_9406 | unknown function | unknown function | 1 | 21868 | 22242 |
| YP_009301795.1 | NC_031237_p52 | hypothetical protein | phrog_572 | unknown function | unknown function | 1 | 35205 | 35558 |
| YP_009301745.1 | NC_031237_p2 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 360 | 1928 |
| YP_009301761.1 | NC_031237_p18 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 16440 | 18086 |
| YP_009301819.1 | NC_031237_p76 | hypothetical protein | phrog_12987 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 46744 | 46935 |
| YP_009301802.1 | NC_031237_p59 | hypothetical protein | phrog_8336 | unknown function | unknown function | 1 | 39019 | 39519 |
| YP_009301794.1 | NC_031237_p51 | hypothetical protein | phrog_6877 | unknown function | unknown function | 1 | 34759 | 35205 |
| YP_009301777.1 | NC_031237_p34 | hypothetical protein | phrog_3 | transcriptional repressor | transcription regulation | 1 | 28915 | 29199 |
| YP_009301786.1 | NC_031237_p43 | hypothetical protein | phrog_9909 | unknown function | unknown function | 1 | 32292 | 32594 |
| YP_009301790.1 | NC_031237_p47 | hypothetical protein | phrog_19919 | unknown function | unknown function | 1 | 33512 | 33934 |
| YP_009301784.1 | NC_031237_p41 | hypothetical protein | phrog_6554 | unknown function | unknown function | 1 | 31802 | 31984 |
| YP_009301747.1 | NC_031237_p4 | capsid maturation protease | phrog_3894 | head maturation protease | head and packaging | 1 | 3316 | 4752 |
| YP_009301760.1 | NC_031237_p17 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 15583 | 16443 |
| YP_009301813.1 | NC_031237_p70 | hypothetical protein | phrog_2857 | tail fiber protein | tail | 1 | 43957 | 44253 |
| YP_009301810.1 | NC_031237_p67 | hypothetical protein | phrog_464 | unknown function | unknown function | 1 | 42359 | 42727 |
| YP_009301796.1 | NC_031237_p53 | hypothetical protein | phrog_2857 | tail fiber protein | tail | 1 | 35555 | 35863 |
| YP_009301791.1 | NC_031237_p48 | hypothetical protein | phrog_5984 | unknown function | unknown function | 1 | 33931 | 34266 |
| YP_009301774.1 | NC_031237_p31 | minor tail protein | phrog_15641 | tail fiber protein | tail | 1 | 25963 | 27858 |
| YP_009301798.1 | NC_031237_p55 | ssDNA binding protein | phrog_2780 | RecT-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 36786 | 37877 |
| YP_009301754.1 | NC_031237_p11 | head-to-tail connector protein | phrog_5837 | head closure Hc1 | connector | 1 | 7639 | 7926 |
| YP_009301778.1 | NC_031237_p35 | hypothetical protein | phrog_22923 | unknown function | unknown function | 1 | 29246 | 29677 |
| YP_009301752.1 | NC_031237_p9 | head-to-tail connector protein | phrog_501 | head closure Hc1 | connector | 1 | 6983 | 7345 |
| YP_009301757.1 | NC_031237_p14 | tail assembly chaperone | phrog_8183 | tail assembly chaperone | tail | 1 | 9189 | 9973 |
| YP_009301748.1 | NC_031237_p5 | scaffolding protein | phrog_673 | head scaffolding protein | head and packaging | 1 | 4754 | 5206 |
| YP_009301811.1 | NC_031237_p68 | hypothetical protein | phrog_10260 | unknown function | unknown function | 1 | 42724 | 42882 |
| YP_009301749.1 | NC_031237_p6 | major capsid protein | phrog_1650 | major head protein | head and packaging | 1 | 5233 | 6162 |
| YP_009301818.1 | NC_031237_p75 | hypothetical protein | phrog_17433 | unknown function | unknown function | 1 | 46478 | 46747 |
| YP_009301817.1 | NC_031237_p74 | RuvC-like resolvase | phrog_159 | RuvC-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 45891 | 46481 |
| YP_009301762.1 | NC_031237_p19 | lysin A | phrog_1512 | endolysin | lysis | 1 | 18103 | 18810 |
| YP_009301780.1 | NC_031237_p37 | hypothetical protein | singleton | unknown function | unknown function | -1 | 30641 | 30838 |
| YP_009301775.1 | NC_031237_p32 | hypothetical protein | phrog_6153 | unknown function | unknown function | -1 | 27895 | 28122 |
| YP_009301787.1 | NC_031237_p44 | hypothetical protein | phrog_33674 | unknown function | unknown function | 1 | 32591 | 32824 |
| YP_009301805.1 | NC_031237_p62 | hypothetical protein | phrog_388 | nucleotidyltransferase | DNA, RNA and nucleotide metabolism | 1 | 39884 | 40669 |
| YP_009301792.1 | NC_031237_p49 | hypothetical protein | phrog_9981 | unknown function | unknown function | 1 | 34263 | 34451 |
| YP_009301746.1 | NC_031237_p3 | portal protein | phrog_113 | portal protein | head and packaging | 1 | 1940 | 3316 |
| YP_009301814.1 | NC_031237_p71 | hypothetical protein | phrog_16913 | unknown function | unknown function | 1 | 44250 | 44540 |
| YP_009301799.1 | NC_031237_p56 | hypothetical protein | phrog_8105 | unknown function | unknown function | 1 | 37874 | 38179 |
| YP_009301758.1 | NC_031237_p15 | tail assembly chaperone | phrog_5010 | tail assembly chaperone | tail | 1 | 9189 | 9599 |
| YP_009301800.1 | NC_031237_p57 | hypothetical protein | phrog_26600 | unknown function | unknown function | 1 | 38176 | 38832 |
| YP_009301807.1 | NC_031237_p64 | hypothetical protein | phrog_32119 | unknown function | unknown function | 1 | 40881 | 41570 |
| YP_009301797.1 | NC_031237_p54 | exonuclease | phrog_434 | RecE-like recombination exonuclease | DNA, RNA and nucleotide metabolism | 1 | 35860 | 36789 |
| YP_009301759.1 | NC_031237_p16 | tape measure protein | phrog_4197 | tail length tape measure protein | tail | 1 | 10043 | 15586 |
| YP_009301772.1 | NC_031237_p29 | hypothetical protein | phrog_8055 | unknown function | unknown function | 1 | 24801 | 25118 |
| YP_009301812.1 | NC_031237_p69 | hypothetical protein | phrog_3171 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 42872 | 43960 |
| YP_009301751.1 | NC_031237_p8 | head-to-tail connector protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 6591 | 6983 |
| YP_009301750.1 | NC_031237_p7 | head-to-tail connector protein | phrog_2322 | head-tail connector protein | connector | 1 | 6166 | 6594 |
| YP_009301779.1 | NC_031237_p36 | integrase | phrog_1 | integrase | integration and excision | -1 | 29674 | 30564 |
| YP_009301773.1 | NC_031237_p30 | minor tail protein | phrog_10433 | minor tail protein | tail | 1 | 25111 | 25959 |
| YP_009301801.1 | NC_031237_p58 | hypothetical protein | phrog_12075 | membrane protein | moron, auxiliary metabolic gene and host takeover | 1 | 38829 | 39035 |
| YP_009301789.1 | NC_031237_p46 | hypothetical protein | phrog_11014 | unknown function | unknown function | 1 | 33147 | 33515 |
| YP_009301744.1 | NC_031237_p1 | terminase small subunit | phrog_1496 | terminase small subunit | head and packaging | 1 | 56 | 397 |
| YP_009301823.1 | NC_031237_p80 | HNH endonuclease | phrog_1808 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 48856 | 49218 |
| YP_009301804.1 | NC_031237_p61 | hypothetical protein | phrog_10682 | unknown function | unknown function | 1 | 39702 | 39887 |
| YP_009301821.1 | NC_031237_p78 | hypothetical protein | singleton | unknown function | unknown function | 1 | 47705 | 48070 |
| YP_009301767.1 | NC_031237_p24 | membrane protein | phrog_3798 | unknown function | unknown function | 1 | 20727 | 21077 |
| YP_009301776.1 | NC_031237_p33 | hypothetical protein | phrog_5392 | unknown function | unknown function | -1 | 28514 | 28822 |
| YP_009301785.1 | NC_031237_p42 | hypothetical protein | phrog_9588 | unknown function | unknown function | 1 | 31981 | 32295 |
| YP_009301771.1 | NC_031237_p28 | minor tail protein | phrog_737 | minor tail protein | tail | 1 | 23302 | 24801 |