| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_031238 |
Definition |
Mycobacterium phage Catalina, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus; unclassified Fromanvirus. |
DB of origin |
REFSEQ |
Length |
53411 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
101 |
%GC |
62.64 |
Number of singletons |
2 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009301909.1 | NC_031238_p86 | DNA methylase | phrog_363 | DNA methyltransferase | other | -1 | 46851 | 47399 |
| YP_009301889.1 | NC_031238_p66 | hypothetical protein | phrog_18212 | unknown function | unknown function | -1 | 40135 | 40272 |
| YP_009301865.1 | NC_031238_p42 | hypothetical protein | phrog_383 | unknown function | unknown function | -1 | 28893 | 29264 |
| YP_009301858.1 | NC_031238_p35 | hypothetical protein | phrog_13533 | unknown function | unknown function | 1 | 26525 | 26947 |
| YP_009301833.1 | NC_031238_p10 | lysin A | phrog_317 | endolysin | lysis | 1 | 6147 | 7727 |
| YP_009301835.1 | NC_031238_p12 | terminase | phrog_9 | terminase large subunit | head and packaging | 1 | 8125 | 9897 |
| YP_009301864.1 | NC_031238_p41 | hypothetical protein | phrog_9466 | unknown function | unknown function | -1 | 28693 | 28896 |
| YP_009301891.1 | NC_031238_p68 | hypothetical protein | phrog_8981 | unknown function | unknown function | -1 | 40406 | 40582 |
| YP_009301863.1 | NC_031238_p40 | hypothetical protein | phrog_10689 | unknown function | unknown function | -1 | 28493 | 28705 |
| YP_009301875.1 | NC_031238_p52 | hypothetical protein | phrog_2046 | unknown function | unknown function | -1 | 35671 | 35874 |
| YP_009301880.1 | NC_031238_p57 | hypothetical protein | phrog_474 | phosphofructokinase | other | -1 | 37679 | 37957 |
| YP_009301902.1 | NC_031238_p79 | hypothetical protein | phrog_1173 | unknown function | unknown function | -1 | 45019 | 45183 |
| YP_009301830.1 | NC_031238_p7 | hypothetical protein | phrog_819 | tail protein | tail | 1 | 4193 | 5236 |
| YP_009301861.1 | NC_031238_p38 | hypothetical protein | phrog_2697 | unknown function | unknown function | -1 | 28001 | 28201 |
| YP_009301841.1 | NC_031238_p18 | hypothetical protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 14141 | 14518 |
| YP_009301897.1 | NC_031238_p74 | hypothetical protein | phrog_520 | unknown function | unknown function | -1 | 42417 | 42695 |
| YP_009301843.1 | NC_031238_p20 | hypothetical protein | phrog_320 | head closure Hc1 | connector | 1 | 14709 | 15077 |
| YP_009301906.1 | NC_031238_p83 | hypothetical protein | phrog_8086 | unknown function | unknown function | -1 | 45905 | 46141 |
| YP_009301851.1 | NC_031238_p28 | hypothetical protein | phrog_1543 | minor tail protein | tail | 1 | 21547 | 21750 |
| YP_009301837.1 | NC_031238_p14 | capsid maturation protease | phrog_193 | head maturation protease | head and packaging | 1 | 11378 | 12238 |
| YP_009301871.1 | NC_031238_p48 | hypothetical protein | phrog_690 | unknown function | unknown function | -1 | 32107 | 32319 |
| YP_009301905.1 | NC_031238_p82 | hypothetical protein | phrog_3963 | unknown function | unknown function | -1 | 45615 | 45905 |
| YP_009301886.1 | NC_031238_p63 | hypothetical protein | phrog_4886 | unknown function | unknown function | -1 | 39398 | 39577 |
| YP_009301893.1 | NC_031238_p70 | hypothetical protein | phrog_542 | unknown function | unknown function | -1 | 40895 | 41050 |
| YP_009301924.1 | NC_031238_p101 | hypothetical protein | phrog_1676 | unknown function | unknown function | -1 | 51651 | 51947 |
| YP_009301846.1 | NC_031238_p23 | major tail protein | phrog_117 | major tail protein | tail | 1 | 15901 | 16497 |
| YP_009301899.1 | NC_031238_p76 | exonuclease | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 42956 | 43798 |
| YP_009301873.1 | NC_031238_p50 | hypothetical protein | phrog_364 | ribonucleoside reductase class II | DNA, RNA and nucleotide metabolism | -1 | 33105 | 33635 |
| YP_009301879.1 | NC_031238_p56 | metallophosphoesterase | phrog_221 | metallo-phosphoesterase | other | -1 | 36912 | 37682 |
| YP_009301885.1 | NC_031238_p62 | hypothetical protein | phrog_10806 | unknown function | unknown function | -1 | 39193 | 39405 |
| YP_009301894.1 | NC_031238_p71 | hypothetical protein | phrog_478 | site-specific recombination directionality factor RDF | integration and excision | -1 | 41047 | 41433 |
| YP_009301920.1 | NC_031238_p97 | hypothetical protein | phrog_2124 | unknown function | unknown function | -1 | 50481 | 50609 |
| YP_009301836.1 | NC_031238_p13 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 9894 | 11381 |
| YP_009301895.1 | NC_031238_p72 | dsDNA helicase | phrog_243 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | -1 | 41445 | 42254 |
| YP_009301844.1 | NC_031238_p21 | hypothetical protein | phrog_321 | tail completion or Neck1 protein | connector | 1 | 15077 | 15466 |
| YP_009301839.1 | NC_031238_p16 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 12849 | 13808 |
| YP_009301903.1 | NC_031238_p80 | hypothetical protein | phrog_7865 | unknown function | unknown function | -1 | 45214 | 45384 |
| YP_009301842.1 | NC_031238_p19 | hypothetical protein | phrog_830 | head-tail connector protein | connector | 1 | 14515 | 14712 |
| YP_009301912.1 | NC_031238_p89 | hypothetical protein | phrog_421 | unknown function | unknown function | -1 | 48049 | 48810 |
| YP_009301917.1 | NC_031238_p94 | hypothetical protein | phrog_519 | unknown function | unknown function | -1 | 49717 | 49890 |
| YP_009301852.1 | NC_031238_p29 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 21747 | 22925 |
| YP_009301877.1 | NC_031238_p54 | hypothetical protein | phrog_10515 | unknown function | unknown function | -1 | 36106 | 36246 |
| YP_009301827.1 | NC_031238_p4 | HNH endonuclease | phrog_333 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 2335 | 2628 |
| YP_009301832.1 | NC_031238_p9 | hypothetical protein | phrog_1087 | unknown function | unknown function | 1 | 6007 | 6147 |
| YP_009301884.1 | NC_031238_p61 | hypothetical protein | phrog_23055 | unknown function | unknown function | -1 | 39065 | 39196 |
| YP_009301828.1 | NC_031238_p5 | minor tail protein | phrog_226 | minor tail protein | tail | 1 | 2669 | 3142 |
| YP_009301856.1 | NC_031238_p33 | minor tail protein | phrog_737 | minor tail protein | tail | 1 | 24377 | 26143 |
| YP_009301859.1 | NC_031238_p36 | dsDNA partitioning protein | phrog_164 | ParA-like partition protein | DNA, RNA and nucleotide metabolism | 1 | 27014 | 27595 |
| YP_009301862.1 | NC_031238_p39 | hypothetical protein | phrog_10331 | DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 28198 | 28512 |
| YP_009301913.1 | NC_031238_p90 | hypothetical protein | phrog_855 | unknown function | unknown function | -1 | 48813 | 48956 |
| YP_009301892.1 | NC_031238_p69 | hypothetical protein | phrog_397 | unknown function | unknown function | -1 | 40579 | 40728 |
| YP_009301904.1 | NC_031238_p81 | hypothetical protein | phrog_5531 | unknown function | unknown function | -1 | 45394 | 45612 |
| YP_009301910.1 | NC_031238_p87 | hypothetical protein | phrog_3256 | unknown function | unknown function | -1 | 47403 | 47768 |
| YP_009301853.1 | NC_031238_p30 | minor tail protein | singleton | unknown function | unknown function | 1 | 22922 | 23539 |
| YP_009301896.1 | NC_031238_p73 | hypothetical protein | singleton | unknown function | unknown function | -1 | 42274 | 42420 |
| YP_009301918.1 | NC_031238_p95 | hypothetical protein | phrog_10771 | unknown function | unknown function | -1 | 49887 | 50258 |
| YP_009301866.1 | NC_031238_p43 | hypothetical protein | phrog_7968 | unknown function | unknown function | -1 | 29257 | 29421 |
| YP_009301870.1 | NC_031238_p47 | HTH DNA binding protein | phrog_517 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 31784 | 32110 |
| YP_009301825.1 | NC_031238_p2 | hypothetical protein | phrog_5234 | unknown function | unknown function | 1 | 1050 | 2114 |
| YP_009301867.1 | NC_031238_p44 | hypothetical protein | phrog_896 | unknown function | unknown function | -1 | 29421 | 29660 |
| YP_009301848.1 | NC_031238_p25 | tail assembly chaperone | phrog_330 | tail assembly chaperone | tail | 1 | 16615 | 17010 |
| YP_009301826.1 | NC_031238_p3 | hypothetical protein | phrog_10336 | unknown function | unknown function | 1 | 2111 | 2338 |
| YP_009301908.1 | NC_031238_p85 | DNA methylase | phrog_1008 | DNA methyltransferase | other | -1 | 46385 | 46900 |
| YP_009301911.1 | NC_031238_p88 | hypothetical protein | phrog_439 | site-specific recombination directionality factor RDF | integration and excision | -1 | 47768 | 48034 |
| YP_009301860.1 | NC_031238_p37 | dsDNA partitioning protein | phrog_2639 | Arc-like repressor | transcription regulation | 1 | 27588 | 27857 |
| YP_009301916.1 | NC_031238_p93 | hypothetical protein | phrog_10931 | unknown function | unknown function | -1 | 49586 | 49720 |
| YP_009301834.1 | NC_031238_p11 | holin | phrog_526 | holin | lysis | 1 | 7724 | 8110 |
| YP_009301890.1 | NC_031238_p67 | hypothetical protein | phrog_1498 | unknown function | unknown function | -1 | 40272 | 40421 |
| YP_009301887.1 | NC_031238_p64 | endonuclease VII | phrog_17507 | endonuclease VII | DNA, RNA and nucleotide metabolism | -1 | 39574 | 39771 |
| YP_009301854.1 | NC_031238_p31 | hypothetical protein | phrog_352 | minor tail protein | tail | 1 | 23557 | 24006 |
| YP_009301888.1 | NC_031238_p65 | hypothetical protein | phrog_9791 | unknown function | unknown function | -1 | 39983 | 40138 |
| YP_009301845.1 | NC_031238_p22 | hypothetical protein | phrog_123 | tail terminator | connector | 1 | 15463 | 15885 |
| YP_009301919.1 | NC_031238_p96 | hypothetical protein | phrog_3831 | unknown function | unknown function | -1 | 50261 | 50491 |
| YP_009301831.1 | NC_031238_p8 | hypothetical protein | phrog_356 | minor tail protein | tail | 1 | 5240 | 5869 |
| YP_009301857.1 | NC_031238_p34 | hypothetical protein | phrog_2570 | unknown function | unknown function | 1 | 26210 | 26404 |
| YP_009301907.1 | NC_031238_p84 | hypothetical protein | phrog_1342 | unknown function | unknown function | -1 | 46138 | 46365 |
| YP_009301921.1 | NC_031238_p98 | hypothetical protein | phrog_1392 | unknown function | unknown function | -1 | 50618 | 51328 |
| YP_009301900.1 | NC_031238_p77 | repressor | phrog_1562 | unknown function | unknown function | -1 | 43795 | 44214 |
| YP_009301876.1 | NC_031238_p53 | hypothetical protein | phrog_499 | unknown function | unknown function | -1 | 35846 | 36109 |
| YP_009301850.1 | NC_031238_p27 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 20528 | 21541 |
| YP_009301901.1 | NC_031238_p78 | immunity repressor | phrog_357 | transcriptional repressor | transcription regulation | -1 | 44235 | 44771 |
| YP_009301874.1 | NC_031238_p51 | ribonucleotide reductase | phrog_367 | ribonucleotide reductase | DNA, RNA and nucleotide metabolism | -1 | 33632 | 35671 |
| YP_009301881.1 | NC_031238_p58 | glutaredoxin | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | -1 | 37954 | 38226 |
| YP_009301824.1 | NC_031238_p1 | hypothetical protein | phrog_940 | nuclease | DNA, RNA and nucleotide metabolism | 1 | 379 | 1161 |
| YP_009301915.1 | NC_031238_p92 | hypothetical protein | phrog_586 | unknown function | unknown function | -1 | 49222 | 49575 |
| YP_009301855.1 | NC_031238_p32 | hypothetical protein | phrog_404 | minor tail protein | tail | 1 | 24008 | 24376 |
| YP_009301847.1 | NC_031238_p24 | tail assembly chaperone | phrog_393 | tail assembly chaperone | tail | 1 | 16615 | 17462 |
| YP_009301898.1 | NC_031238_p75 | hypothetical protein | phrog_642 | unknown function | unknown function | -1 | 42707 | 42925 |
| YP_009301872.1 | NC_031238_p49 | thymidylate synthase | phrog_85 | thymidylate synthase | DNA, RNA and nucleotide metabolism | -1 | 32321 | 33025 |
| YP_009301883.1 | NC_031238_p60 | DNA primase | phrog_360 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 38689 | 39072 |
| YP_009301868.1 | NC_031238_p45 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 29691 | 31484 |
| YP_009301882.1 | NC_031238_p59 | DNA primase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 38226 | 38687 |
| YP_009301869.1 | NC_031238_p46 | hypothetical protein | phrog_4326 | unknown function | unknown function | -1 | 31488 | 31784 |
| YP_009301838.1 | NC_031238_p15 | scaffolding protein | phrog_233 | head scaffolding protein | head and packaging | 1 | 12268 | 12801 |
| YP_009301829.1 | NC_031238_p6 | minor tail protein | phrog_1260 | minor tail protein | tail | 1 | 3231 | 4193 |
| YP_009301923.1 | NC_031238_p100 | hypothetical protein | phrog_1445 | unknown function | unknown function | -1 | 51537 | 51620 |
| YP_009301914.1 | NC_031238_p91 | hypothetical protein | phrog_3718 | unknown function | unknown function | -1 | 48953 | 49198 |
| YP_009301878.1 | NC_031238_p55 | hypothetical protein | phrog_354 | sigma-K factor | transcription regulation | -1 | 36243 | 36908 |
| YP_009301840.1 | NC_031238_p17 | hypothetical protein | phrog_3101 | unknown function | unknown function | 1 | 13890 | 14138 |
| YP_009301922.1 | NC_031238_p99 | hypothetical protein | phrog_2499 | unknown function | unknown function | -1 | 51330 | 51533 |
| YP_009301849.1 | NC_031238_p26 | tape measure protein | phrog_305 | tail length tape measure protein | tail | 1 | 17591 | 20500 |