Genomic map of Mycobacterium phage Catalina (NC_031238)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_031238
Definition
Mycobacterium phage Catalina, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus; unclassified Fromanvirus.
DB of origin
REFSEQ
Length
53411
Host Name
Mycobacterium smegmatis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
101
%GC
62.64
Number of singletons
2
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009301909.1 NC_031238_p86 DNA methylase phrog_363 DNA methyltransferase other -1 46851 47399
YP_009301889.1 NC_031238_p66 hypothetical protein phrog_18212 unknown function unknown function -1 40135 40272
YP_009301865.1 NC_031238_p42 hypothetical protein phrog_383 unknown function unknown function -1 28893 29264
YP_009301858.1 NC_031238_p35 hypothetical protein phrog_13533 unknown function unknown function 1 26525 26947
YP_009301833.1 NC_031238_p10 lysin A phrog_317 endolysin lysis 1 6147 7727
YP_009301835.1 NC_031238_p12 terminase phrog_9 terminase large subunit head and packaging 1 8125 9897
YP_009301864.1 NC_031238_p41 hypothetical protein phrog_9466 unknown function unknown function -1 28693 28896
YP_009301891.1 NC_031238_p68 hypothetical protein phrog_8981 unknown function unknown function -1 40406 40582
YP_009301863.1 NC_031238_p40 hypothetical protein phrog_10689 unknown function unknown function -1 28493 28705
YP_009301875.1 NC_031238_p52 hypothetical protein phrog_2046 unknown function unknown function -1 35671 35874
YP_009301880.1 NC_031238_p57 hypothetical protein phrog_474 phosphofructokinase other -1 37679 37957
YP_009301902.1 NC_031238_p79 hypothetical protein phrog_1173 unknown function unknown function -1 45019 45183
YP_009301830.1 NC_031238_p7 hypothetical protein phrog_819 tail protein tail 1 4193 5236
YP_009301861.1 NC_031238_p38 hypothetical protein phrog_2697 unknown function unknown function -1 28001 28201
YP_009301841.1 NC_031238_p18 hypothetical protein phrog_137 head-tail adaptor Ad1 connector 1 14141 14518
YP_009301897.1 NC_031238_p74 hypothetical protein phrog_520 unknown function unknown function -1 42417 42695
YP_009301843.1 NC_031238_p20 hypothetical protein phrog_320 head closure Hc1 connector 1 14709 15077
YP_009301906.1 NC_031238_p83 hypothetical protein phrog_8086 unknown function unknown function -1 45905 46141
YP_009301851.1 NC_031238_p28 hypothetical protein phrog_1543 minor tail protein tail 1 21547 21750
YP_009301837.1 NC_031238_p14 capsid maturation protease phrog_193 head maturation protease head and packaging 1 11378 12238
YP_009301871.1 NC_031238_p48 hypothetical protein phrog_690 unknown function unknown function -1 32107 32319
YP_009301905.1 NC_031238_p82 hypothetical protein phrog_3963 unknown function unknown function -1 45615 45905
YP_009301886.1 NC_031238_p63 hypothetical protein phrog_4886 unknown function unknown function -1 39398 39577
YP_009301893.1 NC_031238_p70 hypothetical protein phrog_542 unknown function unknown function -1 40895 41050
YP_009301924.1 NC_031238_p101 hypothetical protein phrog_1676 unknown function unknown function -1 51651 51947
YP_009301846.1 NC_031238_p23 major tail protein phrog_117 major tail protein tail 1 15901 16497
YP_009301899.1 NC_031238_p76 exonuclease phrog_69 exonuclease DNA, RNA and nucleotide metabolism -1 42956 43798
YP_009301873.1 NC_031238_p50 hypothetical protein phrog_364 ribonucleoside reductase class II DNA, RNA and nucleotide metabolism -1 33105 33635
YP_009301879.1 NC_031238_p56 metallophosphoesterase phrog_221 metallo-phosphoesterase other -1 36912 37682
YP_009301885.1 NC_031238_p62 hypothetical protein phrog_10806 unknown function unknown function -1 39193 39405
YP_009301894.1 NC_031238_p71 hypothetical protein phrog_478 site-specific recombination directionality factor RDF integration and excision -1 41047 41433
YP_009301920.1 NC_031238_p97 hypothetical protein phrog_2124 unknown function unknown function -1 50481 50609
YP_009301836.1 NC_031238_p13 portal protein phrog_104 portal protein head and packaging 1 9894 11381
YP_009301895.1 NC_031238_p72 dsDNA helicase phrog_243 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism -1 41445 42254
YP_009301844.1 NC_031238_p21 hypothetical protein phrog_321 tail completion or Neck1 protein connector 1 15077 15466
YP_009301839.1 NC_031238_p16 major capsid protein phrog_10 major head protein head and packaging 1 12849 13808
YP_009301903.1 NC_031238_p80 hypothetical protein phrog_7865 unknown function unknown function -1 45214 45384
YP_009301842.1 NC_031238_p19 hypothetical protein phrog_830 head-tail connector protein connector 1 14515 14712
YP_009301912.1 NC_031238_p89 hypothetical protein phrog_421 unknown function unknown function -1 48049 48810
YP_009301917.1 NC_031238_p94 hypothetical protein phrog_519 unknown function unknown function -1 49717 49890
YP_009301852.1 NC_031238_p29 minor tail protein phrog_110 minor tail protein tail 1 21747 22925
YP_009301877.1 NC_031238_p54 hypothetical protein phrog_10515 unknown function unknown function -1 36106 36246
YP_009301827.1 NC_031238_p4 HNH endonuclease phrog_333 HNH endonuclease DNA, RNA and nucleotide metabolism 1 2335 2628
YP_009301832.1 NC_031238_p9 hypothetical protein phrog_1087 unknown function unknown function 1 6007 6147
YP_009301884.1 NC_031238_p61 hypothetical protein phrog_23055 unknown function unknown function -1 39065 39196
YP_009301828.1 NC_031238_p5 minor tail protein phrog_226 minor tail protein tail 1 2669 3142
YP_009301856.1 NC_031238_p33 minor tail protein phrog_737 minor tail protein tail 1 24377 26143
YP_009301859.1 NC_031238_p36 dsDNA partitioning protein phrog_164 ParA-like partition protein DNA, RNA and nucleotide metabolism 1 27014 27595
YP_009301862.1 NC_031238_p39 hypothetical protein phrog_10331 DNA binding protein DNA, RNA and nucleotide metabolism -1 28198 28512
YP_009301913.1 NC_031238_p90 hypothetical protein phrog_855 unknown function unknown function -1 48813 48956
YP_009301892.1 NC_031238_p69 hypothetical protein phrog_397 unknown function unknown function -1 40579 40728
YP_009301904.1 NC_031238_p81 hypothetical protein phrog_5531 unknown function unknown function -1 45394 45612
YP_009301910.1 NC_031238_p87 hypothetical protein phrog_3256 unknown function unknown function -1 47403 47768
YP_009301853.1 NC_031238_p30 minor tail protein singleton unknown function unknown function 1 22922 23539
YP_009301896.1 NC_031238_p73 hypothetical protein singleton unknown function unknown function -1 42274 42420
YP_009301918.1 NC_031238_p95 hypothetical protein phrog_10771 unknown function unknown function -1 49887 50258
YP_009301866.1 NC_031238_p43 hypothetical protein phrog_7968 unknown function unknown function -1 29257 29421
YP_009301870.1 NC_031238_p47 HTH DNA binding protein phrog_517 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 31784 32110
YP_009301825.1 NC_031238_p2 hypothetical protein phrog_5234 unknown function unknown function 1 1050 2114
YP_009301867.1 NC_031238_p44 hypothetical protein phrog_896 unknown function unknown function -1 29421 29660
YP_009301848.1 NC_031238_p25 tail assembly chaperone phrog_330 tail assembly chaperone tail 1 16615 17010
YP_009301826.1 NC_031238_p3 hypothetical protein phrog_10336 unknown function unknown function 1 2111 2338
YP_009301908.1 NC_031238_p85 DNA methylase phrog_1008 DNA methyltransferase other -1 46385 46900
YP_009301911.1 NC_031238_p88 hypothetical protein phrog_439 site-specific recombination directionality factor RDF integration and excision -1 47768 48034
YP_009301860.1 NC_031238_p37 dsDNA partitioning protein phrog_2639 Arc-like repressor transcription regulation 1 27588 27857
YP_009301916.1 NC_031238_p93 hypothetical protein phrog_10931 unknown function unknown function -1 49586 49720
YP_009301834.1 NC_031238_p11 holin phrog_526 holin lysis 1 7724 8110
YP_009301890.1 NC_031238_p67 hypothetical protein phrog_1498 unknown function unknown function -1 40272 40421
YP_009301887.1 NC_031238_p64 endonuclease VII phrog_17507 endonuclease VII DNA, RNA and nucleotide metabolism -1 39574 39771
YP_009301854.1 NC_031238_p31 hypothetical protein phrog_352 minor tail protein tail 1 23557 24006
YP_009301888.1 NC_031238_p65 hypothetical protein phrog_9791 unknown function unknown function -1 39983 40138
YP_009301845.1 NC_031238_p22 hypothetical protein phrog_123 tail terminator connector 1 15463 15885
YP_009301919.1 NC_031238_p96 hypothetical protein phrog_3831 unknown function unknown function -1 50261 50491
YP_009301831.1 NC_031238_p8 hypothetical protein phrog_356 minor tail protein tail 1 5240 5869
YP_009301857.1 NC_031238_p34 hypothetical protein phrog_2570 unknown function unknown function 1 26210 26404
YP_009301907.1 NC_031238_p84 hypothetical protein phrog_1342 unknown function unknown function -1 46138 46365
YP_009301921.1 NC_031238_p98 hypothetical protein phrog_1392 unknown function unknown function -1 50618 51328
YP_009301900.1 NC_031238_p77 repressor phrog_1562 unknown function unknown function -1 43795 44214
YP_009301876.1 NC_031238_p53 hypothetical protein phrog_499 unknown function unknown function -1 35846 36109
YP_009301850.1 NC_031238_p27 minor tail protein phrog_106 minor tail protein tail 1 20528 21541
YP_009301901.1 NC_031238_p78 immunity repressor phrog_357 transcriptional repressor transcription regulation -1 44235 44771
YP_009301874.1 NC_031238_p51 ribonucleotide reductase phrog_367 ribonucleotide reductase DNA, RNA and nucleotide metabolism -1 33632 35671
YP_009301881.1 NC_031238_p58 glutaredoxin phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism -1 37954 38226
YP_009301824.1 NC_031238_p1 hypothetical protein phrog_940 nuclease DNA, RNA and nucleotide metabolism 1 379 1161
YP_009301915.1 NC_031238_p92 hypothetical protein phrog_586 unknown function unknown function -1 49222 49575
YP_009301855.1 NC_031238_p32 hypothetical protein phrog_404 minor tail protein tail 1 24008 24376
YP_009301847.1 NC_031238_p24 tail assembly chaperone phrog_393 tail assembly chaperone tail 1 16615 17462
YP_009301898.1 NC_031238_p75 hypothetical protein phrog_642 unknown function unknown function -1 42707 42925
YP_009301872.1 NC_031238_p49 thymidylate synthase phrog_85 thymidylate synthase DNA, RNA and nucleotide metabolism -1 32321 33025
YP_009301883.1 NC_031238_p60 DNA primase phrog_360 DNA primase DNA, RNA and nucleotide metabolism -1 38689 39072
YP_009301868.1 NC_031238_p45 DNA polymerase I phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism -1 29691 31484
YP_009301882.1 NC_031238_p59 DNA primase phrog_47 DNA primase DNA, RNA and nucleotide metabolism -1 38226 38687
YP_009301869.1 NC_031238_p46 hypothetical protein phrog_4326 unknown function unknown function -1 31488 31784
YP_009301838.1 NC_031238_p15 scaffolding protein phrog_233 head scaffolding protein head and packaging 1 12268 12801
YP_009301829.1 NC_031238_p6 minor tail protein phrog_1260 minor tail protein tail 1 3231 4193
YP_009301923.1 NC_031238_p100 hypothetical protein phrog_1445 unknown function unknown function -1 51537 51620
YP_009301914.1 NC_031238_p91 hypothetical protein phrog_3718 unknown function unknown function -1 48953 49198
YP_009301878.1 NC_031238_p55 hypothetical protein phrog_354 sigma-K factor transcription regulation -1 36243 36908
YP_009301840.1 NC_031238_p17 hypothetical protein phrog_3101 unknown function unknown function 1 13890 14138
YP_009301922.1 NC_031238_p99 hypothetical protein phrog_2499 unknown function unknown function -1 51330 51533
YP_009301849.1 NC_031238_p26 tape measure protein phrog_305 tail length tape measure protein tail 1 17591 20500