| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_031239 |
Definition |
Gordonia phage Vivi2, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Vividuovirus; Gordonia virus Vivi2. |
DB of origin |
REFSEQ |
Length |
59337 |
Host Name |
Gordonia terrae |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
89 |
%GC |
67.13 |
Number of singletons |
7 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009302000.1 | NC_031239_p76 | hypothetical protein | phrog_21901 | unknown function | unknown function | 1 | 54411 | 54710 |
| YP_009301996.1 | NC_031239_p72 | hypothetical protein | phrog_32335 | unknown function | unknown function | 1 | 52040 | 52333 |
| YP_009302004.1 | NC_031239_p80 | hypothetical protein | phrog_35348 | unknown function | unknown function | 1 | 55928 | 56197 |
| YP_009301941.1 | NC_031239_p17 | hypothetical protein | phrog_23855 | unknown function | unknown function | 1 | 14455 | 14628 |
| YP_009301960.1 | NC_031239_p36 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 30528 | 31484 |
| YP_009301988.1 | NC_031239_p64 | hypothetical protein | phrog_16769 | unknown function | unknown function | 1 | 48862 | 49254 |
| YP_009301930.1 | NC_031239_p6 | hypothetical protein | phrog_21387 | unknown function | unknown function | 1 | 4342 | 4515 |
| YP_009301976.1 | NC_031239_p52 | hypothetical protein | phrog_38185 | unknown function | unknown function | 1 | 43487 | 43663 |
| YP_009301931.1 | NC_031239_p7 | hypothetical protein | phrog_22356 | unknown function | unknown function | 1 | 4576 | 4971 |
| YP_009301965.1 | NC_031239_p41 | hypothetical protein | phrog_4137 | unknown function | unknown function | 1 | 36338 | 36616 |
| YP_009301932.1 | NC_031239_p8 | lipoprotein | phrog_4980 | superinfection exclusion | moron, auxiliary metabolic gene and host takeover | 1 | 5070 | 5612 |
| YP_009301945.1 | NC_031239_p21 | hypothetical protein | phrog_779 | unknown function | unknown function | 1 | 17307 | 18137 |
| YP_009301936.1 | NC_031239_p12 | hypothetical protein | phrog_14528 | unknown function | unknown function | 1 | 7797 | 8156 |
| YP_009301998.1 | NC_031239_p74 | hypothetical protein | phrog_16850 | unknown function | unknown function | 1 | 52962 | 53333 |
| YP_009301933.1 | NC_031239_p9 | hypothetical protein | phrog_23472 | unknown function | unknown function | 1 | 5614 | 5781 |
| YP_009301981.1 | NC_031239_p57 | hypothetical protein | phrog_24531 | unknown function | unknown function | 1 | 45881 | 46081 |
| YP_009301946.1 | NC_031239_p22 | hypothetical protein | phrog_14463 | unknown function | unknown function | 1 | 18154 | 18669 |
| YP_009301952.1 | NC_031239_p28 | hypothetical protein | singleton | unknown function | unknown function | 1 | 21898 | 22047 |
| YP_009301977.1 | NC_031239_p53 | hypothetical protein | phrog_27530 | unknown function | unknown function | 1 | 43666 | 43938 |
| YP_009301963.1 | NC_031239_p39 | hypothetical protein | phrog_352 | minor tail protein | tail | 1 | 33856 | 34413 |
| YP_009301973.1 | NC_031239_p49 | hypothetical protein | phrog_17370 | unknown function | unknown function | 1 | 41638 | 42084 |
| YP_009301995.1 | NC_031239_p71 | hypothetical protein | phrog_33533 | unknown function | unknown function | 1 | 51745 | 51927 |
| YP_009301948.1 | NC_031239_p24 | hypothetical protein | phrog_35351 | unknown function | unknown function | 1 | 19596 | 19829 |
| YP_009301927.1 | NC_031239_p3 | hypothetical protein | phrog_34768 | unknown function | unknown function | 1 | 2948 | 3208 |
| YP_009301962.1 | NC_031239_p38 | HNH endonuclease | phrog_1492 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 33263 | 33736 |
| YP_009302013.1 | NC_031239_p89 | methyltransferase | phrog_111 | DNA methyltransferase | other | 1 | 58598 | 59149 |
| YP_009301928.1 | NC_031239_p4 | membrane protein | singleton | unknown function | unknown function | 1 | 3242 | 3874 |
| YP_009301961.1 | NC_031239_p37 | hypothetical protein | phrog_110 | minor tail protein | tail | 1 | 31487 | 33250 |
| YP_009301984.1 | NC_031239_p60 | HTH DNA-binding protein | phrog_27344 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 46593 | 47636 |
| YP_009301953.1 | NC_031239_p29 | hypothetical protein | phrog_783 | head-tail adaptor | connector | 1 | 22212 | 22979 |
| YP_009301958.1 | NC_031239_p34 | hypothetical protein | phrog_13927 | unknown function | unknown function | 1 | 25003 | 25611 |
| YP_009301954.1 | NC_031239_p30 | hypothetical protein | phrog_810 | unknown function | unknown function | 1 | 22976 | 23524 |
| YP_009301942.1 | NC_031239_p18 | HNH endonuclease | phrog_826 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 14618 | 15085 |
| YP_009302009.1 | NC_031239_p85 | hypothetical protein | phrog_3848 | unknown function | unknown function | 1 | 57303 | 57620 |
| YP_009302002.1 | NC_031239_p78 | hypothetical protein | phrog_13001 | unknown function | unknown function | 1 | 55466 | 55729 |
| YP_009301970.1 | NC_031239_p46 | membrane protein | phrog_1298 | minor tail protein | tail | 1 | 39701 | 40384 |
| YP_009301940.1 | NC_031239_p16 | hypothetical protein | phrog_18402 | head maturation protease | head and packaging | 1 | 11838 | 14453 |
| YP_009301935.1 | NC_031239_p11 | portal protein | phrog_776 | portal protein | head and packaging | 1 | 6178 | 7800 |
| YP_009301990.1 | NC_031239_p66 | hypothetical protein | phrog_26886 | unknown function | unknown function | 1 | 50324 | 50701 |
| YP_009301999.1 | NC_031239_p75 | hypothetical protein | phrog_26185 | unknown function | unknown function | 1 | 53330 | 54409 |
| YP_009301925.1 | NC_031239_p1 | hypothetical protein | phrog_645 | Rnase E | DNA, RNA and nucleotide metabolism | 1 | 1 | 510 |
| YP_009302008.1 | NC_031239_p84 | hypothetical protein | phrog_15181 | unknown function | unknown function | 1 | 57019 | 57306 |
| YP_009301964.1 | NC_031239_p40 | hypothetical protein | phrog_2689 | minor tail protein | tail | 1 | 34410 | 36332 |
| YP_009301978.1 | NC_031239_p54 | HNH endonuclease | phrog_826 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 43935 | 44456 |
| YP_009302006.1 | NC_031239_p82 | hypothetical protein | phrog_26914 | unknown function | unknown function | 1 | 56385 | 56588 |
| YP_009301987.1 | NC_031239_p63 | hypothetical protein | phrog_19496 | unknown function | unknown function | 1 | 48686 | 48865 |
| YP_009301956.1 | NC_031239_p32 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 23909 | 24343 |
| YP_009301959.1 | NC_031239_p35 | tape measure protein | phrog_6090 | tail length tape measure protein | tail | 1 | 25706 | 30517 |
| YP_009301979.1 | NC_031239_p55 | ssDNA binding protein | phrog_148 | RecT-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 44459 | 45457 |
| YP_009301943.1 | NC_031239_p19 | hypothetical protein | phrog_14225 | unknown function | unknown function | 1 | 15088 | 15201 |
| YP_009302012.1 | NC_031239_p88 | HTH DNA-binding protein | phrog_597 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 58335 | 58601 |
| YP_009301994.1 | NC_031239_p70 | hypothetical protein | phrog_31047 | unknown function | unknown function | 1 | 51344 | 51748 |
| YP_009301949.1 | NC_031239_p25 | hypothetical protein | singleton | unknown function | unknown function | 1 | 19906 | 20631 |
| YP_009301991.1 | NC_031239_p67 | hypothetical protein | singleton | unknown function | unknown function | 1 | 50698 | 50823 |
| YP_009301971.1 | NC_031239_p47 | membrane protein | phrog_726 | unknown function | unknown function | 1 | 40374 | 40823 |
| YP_009301938.1 | NC_031239_p14 | hypothetical protein | phrog_18477 | head morphogenesis | head and packaging | 1 | 8338 | 11589 |
| YP_009301997.1 | NC_031239_p73 | resolvase | phrog_159 | RuvC-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 52330 | 52968 |
| YP_009301989.1 | NC_031239_p65 | hypothetical protein | phrog_21374 | unknown function | unknown function | 1 | 49251 | 50327 |
| YP_009301968.1 | NC_031239_p44 | lysin A | phrog_2998 | endolysin | lysis | 1 | 37477 | 39222 |
| YP_009301974.1 | NC_031239_p50 | hypothetical protein | phrog_5984 | unknown function | unknown function | 1 | 42081 | 42335 |
| YP_009301929.1 | NC_031239_p5 | hypothetical protein | phrog_21555 | unknown function | unknown function | 1 | 3871 | 4314 |
| YP_009301972.1 | NC_031239_p48 | lysin B | phrog_102 | endolysin | lysis | 1 | 40816 | 41550 |
| YP_009301986.1 | NC_031239_p62 | hypothetical protein | singleton | unknown function | unknown function | 1 | 48540 | 48689 |
| YP_009301944.1 | NC_031239_p20 | major capsid protein | phrog_777 | major head protein | head and packaging | 1 | 15311 | 17209 |
| YP_009301967.1 | NC_031239_p43 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 36914 | 37381 |
| YP_009301966.1 | NC_031239_p42 | hypothetical protein | phrog_23538 | unknown function | unknown function | 1 | 36613 | 36798 |
| YP_009301951.1 | NC_031239_p27 | hypothetical protein | singleton | unknown function | unknown function | 1 | 21602 | 21886 |
| YP_009302003.1 | NC_031239_p79 | hypothetical protein | phrog_24143 | unknown function | unknown function | 1 | 55726 | 55875 |
| YP_009302011.1 | NC_031239_p87 | hypothetical protein | phrog_17380 | unknown function | unknown function | 1 | 58000 | 58275 |
| YP_009301939.1 | NC_031239_p15 | hypothetical protein | phrog_17748 | unknown function | unknown function | 1 | 11586 | 11804 |
| YP_009302010.1 | NC_031239_p86 | hypothetical protein | phrog_17681 | unknown function | unknown function | 1 | 57617 | 58003 |
| YP_009301975.1 | NC_031239_p51 | exonuclease | phrog_434 | RecE-like recombination exonuclease | DNA, RNA and nucleotide metabolism | 1 | 42332 | 43459 |
| YP_009301926.1 | NC_031239_p2 | terminase large subunit | phrog_38 | terminase large subunit | head and packaging | 1 | 514 | 2907 |
| YP_009301934.1 | NC_031239_p10 | hypothetical protein | phrog_781 | unknown function | unknown function | 1 | 5856 | 6164 |
| YP_009301992.1 | NC_031239_p68 | hypothetical protein | phrog_22035 | unknown function | unknown function | 1 | 50816 | 51082 |
| YP_009301993.1 | NC_031239_p69 | hypothetical protein | phrog_23432 | unknown function | unknown function | 1 | 51079 | 51267 |
| YP_009301985.1 | NC_031239_p61 | hypothetical protein | phrog_6055 | unknown function | unknown function | 1 | 47633 | 48136 |
| YP_009301937.1 | NC_031239_p13 | hypothetical protein | phrog_36055 | unknown function | unknown function | 1 | 8153 | 8353 |
| YP_009301947.1 | NC_031239_p23 | major tail protein | phrog_792 | major tail protein | tail | 1 | 18774 | 19469 |
| YP_009301982.1 | NC_031239_p58 | HTH DNA-binding protein | phrog_66 | excisionase and transcriptional regulator | integration and excision | 1 | 46078 | 46281 |
| YP_009301980.1 | NC_031239_p56 | hypothetical protein | phrog_14395 | unknown function | unknown function | 1 | 45472 | 45903 |
| YP_009302007.1 | NC_031239_p83 | hypothetical protein | phrog_26813 | unknown function | unknown function | 1 | 56643 | 57005 |
| YP_009301955.1 | NC_031239_p31 | hypothetical protein | phrog_901 | unknown function | unknown function | 1 | 23521 | 23928 |
| YP_009302001.1 | NC_031239_p77 | hypothetical protein | phrog_17794 | unknown function | unknown function | 1 | 55003 | 55473 |
| YP_009301950.1 | NC_031239_p26 | hypothetical protein | singleton | unknown function | unknown function | 1 | 20634 | 21605 |
| YP_009301957.1 | NC_031239_p33 | hypothetical protein | phrog_14331 | unknown function | unknown function | 1 | 24383 | 24994 |
| YP_009301969.1 | NC_031239_p45 | membrane protein | phrog_443 | holin | lysis | 1 | 39237 | 39704 |
| YP_009302005.1 | NC_031239_p81 | hypothetical protein | phrog_4852 | unknown function | unknown function | 1 | 56194 | 56370 |
| YP_009301983.1 | NC_031239_p59 | hypothetical protein | phrog_27757 | unknown function | unknown function | 1 | 46291 | 46596 |