Genomic map of Gordonia phage Vivi2 (NC_031239)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_031239
Definition
Gordonia phage Vivi2, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Vividuovirus; Gordonia virus Vivi2.
DB of origin
REFSEQ
Length
59337
Host Name
Gordonia terrae
Host domain
Bacteria
Is prophage?
undef
Number of proteins
89
%GC
67.13
Number of singletons
7
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009302000.1 NC_031239_p76 hypothetical protein phrog_21901 unknown function unknown function 1 54411 54710
YP_009301996.1 NC_031239_p72 hypothetical protein phrog_32335 unknown function unknown function 1 52040 52333
YP_009302004.1 NC_031239_p80 hypothetical protein phrog_35348 unknown function unknown function 1 55928 56197
YP_009301941.1 NC_031239_p17 hypothetical protein phrog_23855 unknown function unknown function 1 14455 14628
YP_009301960.1 NC_031239_p36 minor tail protein phrog_106 minor tail protein tail 1 30528 31484
YP_009301988.1 NC_031239_p64 hypothetical protein phrog_16769 unknown function unknown function 1 48862 49254
YP_009301930.1 NC_031239_p6 hypothetical protein phrog_21387 unknown function unknown function 1 4342 4515
YP_009301976.1 NC_031239_p52 hypothetical protein phrog_38185 unknown function unknown function 1 43487 43663
YP_009301931.1 NC_031239_p7 hypothetical protein phrog_22356 unknown function unknown function 1 4576 4971
YP_009301965.1 NC_031239_p41 hypothetical protein phrog_4137 unknown function unknown function 1 36338 36616
YP_009301932.1 NC_031239_p8 lipoprotein phrog_4980 superinfection exclusion moron, auxiliary metabolic gene and host takeover 1 5070 5612
YP_009301945.1 NC_031239_p21 hypothetical protein phrog_779 unknown function unknown function 1 17307 18137
YP_009301936.1 NC_031239_p12 hypothetical protein phrog_14528 unknown function unknown function 1 7797 8156
YP_009301998.1 NC_031239_p74 hypothetical protein phrog_16850 unknown function unknown function 1 52962 53333
YP_009301933.1 NC_031239_p9 hypothetical protein phrog_23472 unknown function unknown function 1 5614 5781
YP_009301981.1 NC_031239_p57 hypothetical protein phrog_24531 unknown function unknown function 1 45881 46081
YP_009301946.1 NC_031239_p22 hypothetical protein phrog_14463 unknown function unknown function 1 18154 18669
YP_009301952.1 NC_031239_p28 hypothetical protein singleton unknown function unknown function 1 21898 22047
YP_009301977.1 NC_031239_p53 hypothetical protein phrog_27530 unknown function unknown function 1 43666 43938
YP_009301963.1 NC_031239_p39 hypothetical protein phrog_352 minor tail protein tail 1 33856 34413
YP_009301973.1 NC_031239_p49 hypothetical protein phrog_17370 unknown function unknown function 1 41638 42084
YP_009301995.1 NC_031239_p71 hypothetical protein phrog_33533 unknown function unknown function 1 51745 51927
YP_009301948.1 NC_031239_p24 hypothetical protein phrog_35351 unknown function unknown function 1 19596 19829
YP_009301927.1 NC_031239_p3 hypothetical protein phrog_34768 unknown function unknown function 1 2948 3208
YP_009301962.1 NC_031239_p38 HNH endonuclease phrog_1492 HNH endonuclease DNA, RNA and nucleotide metabolism -1 33263 33736
YP_009302013.1 NC_031239_p89 methyltransferase phrog_111 DNA methyltransferase other 1 58598 59149
YP_009301928.1 NC_031239_p4 membrane protein singleton unknown function unknown function 1 3242 3874
YP_009301961.1 NC_031239_p37 hypothetical protein phrog_110 minor tail protein tail 1 31487 33250
YP_009301984.1 NC_031239_p60 HTH DNA-binding protein phrog_27344 replication initiation protein DNA, RNA and nucleotide metabolism 1 46593 47636
YP_009301953.1 NC_031239_p29 hypothetical protein phrog_783 head-tail adaptor connector 1 22212 22979
YP_009301958.1 NC_031239_p34 hypothetical protein phrog_13927 unknown function unknown function 1 25003 25611
YP_009301954.1 NC_031239_p30 hypothetical protein phrog_810 unknown function unknown function 1 22976 23524
YP_009301942.1 NC_031239_p18 HNH endonuclease phrog_826 HNH endonuclease DNA, RNA and nucleotide metabolism 1 14618 15085
YP_009302009.1 NC_031239_p85 hypothetical protein phrog_3848 unknown function unknown function 1 57303 57620
YP_009302002.1 NC_031239_p78 hypothetical protein phrog_13001 unknown function unknown function 1 55466 55729
YP_009301970.1 NC_031239_p46 membrane protein phrog_1298 minor tail protein tail 1 39701 40384
YP_009301940.1 NC_031239_p16 hypothetical protein phrog_18402 head maturation protease head and packaging 1 11838 14453
YP_009301935.1 NC_031239_p11 portal protein phrog_776 portal protein head and packaging 1 6178 7800
YP_009301990.1 NC_031239_p66 hypothetical protein phrog_26886 unknown function unknown function 1 50324 50701
YP_009301999.1 NC_031239_p75 hypothetical protein phrog_26185 unknown function unknown function 1 53330 54409
YP_009301925.1 NC_031239_p1 hypothetical protein phrog_645 Rnase E DNA, RNA and nucleotide metabolism 1 1 510
YP_009302008.1 NC_031239_p84 hypothetical protein phrog_15181 unknown function unknown function 1 57019 57306
YP_009301964.1 NC_031239_p40 hypothetical protein phrog_2689 minor tail protein tail 1 34410 36332
YP_009301978.1 NC_031239_p54 HNH endonuclease phrog_826 HNH endonuclease DNA, RNA and nucleotide metabolism 1 43935 44456
YP_009302006.1 NC_031239_p82 hypothetical protein phrog_26914 unknown function unknown function 1 56385 56588
YP_009301987.1 NC_031239_p63 hypothetical protein phrog_19496 unknown function unknown function 1 48686 48865
YP_009301956.1 NC_031239_p32 hypothetical protein phrog_5 tail completion or Neck1 protein connector 1 23909 24343
YP_009301959.1 NC_031239_p35 tape measure protein phrog_6090 tail length tape measure protein tail 1 25706 30517
YP_009301979.1 NC_031239_p55 ssDNA binding protein phrog_148 RecT-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 44459 45457
YP_009301943.1 NC_031239_p19 hypothetical protein phrog_14225 unknown function unknown function 1 15088 15201
YP_009302012.1 NC_031239_p88 HTH DNA-binding protein phrog_597 DNA binding protein DNA, RNA and nucleotide metabolism 1 58335 58601
YP_009301994.1 NC_031239_p70 hypothetical protein phrog_31047 unknown function unknown function 1 51344 51748
YP_009301949.1 NC_031239_p25 hypothetical protein singleton unknown function unknown function 1 19906 20631
YP_009301991.1 NC_031239_p67 hypothetical protein singleton unknown function unknown function 1 50698 50823
YP_009301971.1 NC_031239_p47 membrane protein phrog_726 unknown function unknown function 1 40374 40823
YP_009301938.1 NC_031239_p14 hypothetical protein phrog_18477 head morphogenesis head and packaging 1 8338 11589
YP_009301997.1 NC_031239_p73 resolvase phrog_159 RuvC-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 52330 52968
YP_009301989.1 NC_031239_p65 hypothetical protein phrog_21374 unknown function unknown function 1 49251 50327
YP_009301968.1 NC_031239_p44 lysin A phrog_2998 endolysin lysis 1 37477 39222
YP_009301974.1 NC_031239_p50 hypothetical protein phrog_5984 unknown function unknown function 1 42081 42335
YP_009301929.1 NC_031239_p5 hypothetical protein phrog_21555 unknown function unknown function 1 3871 4314
YP_009301972.1 NC_031239_p48 lysin B phrog_102 endolysin lysis 1 40816 41550
YP_009301986.1 NC_031239_p62 hypothetical protein singleton unknown function unknown function 1 48540 48689
YP_009301944.1 NC_031239_p20 major capsid protein phrog_777 major head protein head and packaging 1 15311 17209
YP_009301967.1 NC_031239_p43 HNH endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism -1 36914 37381
YP_009301966.1 NC_031239_p42 hypothetical protein phrog_23538 unknown function unknown function 1 36613 36798
YP_009301951.1 NC_031239_p27 hypothetical protein singleton unknown function unknown function 1 21602 21886
YP_009302003.1 NC_031239_p79 hypothetical protein phrog_24143 unknown function unknown function 1 55726 55875
YP_009302011.1 NC_031239_p87 hypothetical protein phrog_17380 unknown function unknown function 1 58000 58275
YP_009301939.1 NC_031239_p15 hypothetical protein phrog_17748 unknown function unknown function 1 11586 11804
YP_009302010.1 NC_031239_p86 hypothetical protein phrog_17681 unknown function unknown function 1 57617 58003
YP_009301975.1 NC_031239_p51 exonuclease phrog_434 RecE-like recombination exonuclease DNA, RNA and nucleotide metabolism 1 42332 43459
YP_009301926.1 NC_031239_p2 terminase large subunit phrog_38 terminase large subunit head and packaging 1 514 2907
YP_009301934.1 NC_031239_p10 hypothetical protein phrog_781 unknown function unknown function 1 5856 6164
YP_009301992.1 NC_031239_p68 hypothetical protein phrog_22035 unknown function unknown function 1 50816 51082
YP_009301993.1 NC_031239_p69 hypothetical protein phrog_23432 unknown function unknown function 1 51079 51267
YP_009301985.1 NC_031239_p61 hypothetical protein phrog_6055 unknown function unknown function 1 47633 48136
YP_009301937.1 NC_031239_p13 hypothetical protein phrog_36055 unknown function unknown function 1 8153 8353
YP_009301947.1 NC_031239_p23 major tail protein phrog_792 major tail protein tail 1 18774 19469
YP_009301982.1 NC_031239_p58 HTH DNA-binding protein phrog_66 excisionase and transcriptional regulator integration and excision 1 46078 46281
YP_009301980.1 NC_031239_p56 hypothetical protein phrog_14395 unknown function unknown function 1 45472 45903
YP_009302007.1 NC_031239_p83 hypothetical protein phrog_26813 unknown function unknown function 1 56643 57005
YP_009301955.1 NC_031239_p31 hypothetical protein phrog_901 unknown function unknown function 1 23521 23928
YP_009302001.1 NC_031239_p77 hypothetical protein phrog_17794 unknown function unknown function 1 55003 55473
YP_009301950.1 NC_031239_p26 hypothetical protein singleton unknown function unknown function 1 20634 21605
YP_009301957.1 NC_031239_p33 hypothetical protein phrog_14331 unknown function unknown function 1 24383 24994
YP_009301969.1 NC_031239_p45 membrane protein phrog_443 holin lysis 1 39237 39704
YP_009302005.1 NC_031239_p81 hypothetical protein phrog_4852 unknown function unknown function 1 56194 56370
YP_009301983.1 NC_031239_p59 hypothetical protein phrog_27757 unknown function unknown function 1 46291 46596