Genomic map of Staphylococcus phage CNPx (NC_031241)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_031241
Definition
Staphylococcus phage CNPx, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Phietavirus; unclassified Phietavirus.
DB of origin
REFSEQ
Length
43293
Host Name
Staphylococcus epidermidis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
69
%GC
34.66
Number of singletons
1
Number of paralogs
3

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009302028.1 NC_031241_p10 head-tail adaptor phrog_25 head closure Hc1 connector 1 6818 7147
YP_009302068.1 NC_031241_p50 hypothetical protein phrog_2289 helicase loader DNA, RNA and nucleotide metabolism 1 35728 36087
YP_009302072.1 NC_031241_p54 holliday junction resolvase phrog_140 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 37765 38172
YP_009302026.1 NC_031241_p8 transcriptional terminator phrog_390 Arc-like repressor transcription regulation 1 6221 6511
YP_009302051.1 NC_031241_p33 hypothetical protein phrog_5375 unknown function unknown function -1 29177 29653
YP_009302063.1 NC_031241_p45 hypothetical protein phrog_946 unknown function unknown function 1 33001 33225
YP_009302067.1 NC_031241_p49 replication initiation protein phrog_186 DnaD-like helicase loader DNA, RNA and nucleotide metabolism 1 34934 35728
YP_009302054.1 NC_031241_p36 hypothetical protein phrog_3 transcriptional repressor transcription regulation 1 30633 30881
YP_009302085.1 NC_031241_p67 hypothetical protein phrog_2409 unknown function unknown function 1 42138 42536
YP_009302047.1 NC_031241_p29 lysin phrog_489 endolysin lysis 1 24332 25714
YP_009302078.1 NC_031241_p60 nuclease family protein phrog_452 endonuclease DNA, RNA and nucleotide metabolism 1 40014 40370
YP_009302045.1 NC_031241_p27 hypothetical protein phrog_134 unknown function unknown function 1 23859 24005
YP_009302042.1 NC_031241_p24 bifunctional autolysin Atl/N-acetylmuramoyl-L-alanine amidase/endo-beta-N-acetylglucosaminidase phrog_759 tail associated cell-wall hydrolase other 1 20555 22465
YP_009302087.1 NC_031241_p69 transcriptional regulator phrog_36 transcriptional regulator transcription regulation 1 42667 43083
YP_009302038.1 NC_031241_p20 hypothetical protein phrog_257 minor tail protein tail 1 18063 19595
YP_009302041.1 NC_031241_p23 hypothetical protein phrog_276 unknown function unknown function 1 20117 20416
YP_009302062.1 NC_031241_p44 hypothetical protein phrog_7824 unknown function unknown function 1 32754 33029
YP_009302080.1 NC_031241_p62 hypothetical protein phrog_8714 unknown function unknown function 1 40637 40816
YP_009302031.1 NC_031241_p13 hypothetical protein phrog_238 major tail protein tail 1 7990 8529
YP_009302056.1 NC_031241_p38 hypothetical protein phrog_13376 unknown function unknown function -1 31016 31186
YP_009302081.1 NC_031241_p63 deoxyuridine 5'-triphosphatenucleotidohydrolase phrog_135 dUTPase DNA, RNA and nucleotide metabolism 1 40809 41234
YP_009302048.1 NC_031241_p30 hypothetical protein phrog_4538 unknown function unknown function 1 25781 26941
YP_009302065.1 NC_031241_p47 single-stranded DNA-binding protein phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 33837 34253
YP_009302073.1 NC_031241_p55 transcriptional regulator phrog_13968 transcriptional regulator transcription regulation 1 38173 38370
YP_009302021.1 NC_031241_p3 portal protein phrog_64 portal protein head and packaging 1 1934 3370
YP_009302032.1 NC_031241_p14 hypothetical protein phrog_183 tail chaperone protein tail 1 8592 9086
YP_009302052.1 NC_031241_p34 hypothetical protein phrog_87 metallo-protease other -1 29673 30134
YP_009302029.1 NC_031241_p11 capsid and scaffold protein phrog_5 tail completion or Neck1 protein connector 1 7140 7553
YP_009302064.1 NC_031241_p46 hypothetical protein phrog_659 Sak-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 33218 33844
YP_009302058.1 NC_031241_p40 hypothetical protein phrog_16149 unknown function unknown function 1 32005 32169
YP_009302040.1 NC_031241_p22 hypothetical protein phrog_134 unknown function unknown function 1 19940 20080
YP_009302022.1 NC_031241_p4 minor capsid protein phrog_115 minor head protein head and packaging 1 3327 4280
YP_009302027.1 NC_031241_p9 capsid and scaffold protein phrog_1161 head-tail adaptor connector 1 6511 6825
YP_009302057.1 NC_031241_p39 antirepressor protein phrog_63 anti-repressor Ant transcription regulation 1 31235 32002
YP_009302071.1 NC_031241_p53 hypothetical protein phrog_433 unknown function unknown function 1 37511 37756
YP_009302046.1 NC_031241_p28 holin phrog_263 holin lysis 1 24060 24332
YP_009302037.1 NC_031241_p19 neck protein phrog_4775 pre-neck appendage protein connector 1 15397 18063
YP_009302024.1 NC_031241_p6 capsid and scaffold protein phrog_194 head scaffolding protein head and packaging 1 4709 5233
YP_009302049.1 NC_031241_p31 hypothetical protein phrog_95 integrase integration and excision -1 27263 28639
YP_009302044.1 NC_031241_p26 hypothetical protein phrog_1766 tail fiber protein tail 1 23513 23866
YP_009302035.1 NC_031241_p17 hypothetical protein phrog_33 distal tail protein Dit tail 1 12574 13512
YP_009302084.1 NC_031241_p66 transcriptional regulator phrog_152 RinB-like transcriptional activator transcription regulation 1 41762 41932
YP_009302033.1 NC_031241_p15 hypothetical protein phrog_1404 tail protein tail 1 9149 9451
YP_009302034.1 NC_031241_p16 tail length tape-measure protein phrog_58 tail length tape measure protein tail 1 9454 12558
YP_009302079.1 NC_031241_p61 hypothetical protein phrog_4380 unknown function unknown function 1 40374 40607
YP_009302030.1 NC_031241_p12 hypothetical protein phrog_176 tail terminator connector 1 7566 8003
YP_009302076.1 NC_031241_p58 HNH homing endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism 1 39164 39844
YP_009302055.1 NC_031241_p37 hypothetical protein phrog_6431 unknown function unknown function 1 30894 31055
YP_009302036.1 NC_031241_p18 minor structural protein phrog_663 minor head protein head and packaging 1 13526 15382
YP_009302059.1 NC_031241_p41 hypothetical protein phrog_14955 unknown function unknown function -1 32155 32361
YP_009302023.1 NC_031241_p5 tail length tape-measure protein phrog_2881 dCMP hydroxymethylase DNA, RNA and nucleotide metabolism 1 4388 4594
YP_009302083.1 NC_031241_p65 hypothetical protein phrog_24716 unknown function unknown function 1 41514 41765
YP_009302066.1 NC_031241_p48 hypothetical protein phrog_398 unknown function unknown function 1 34267 34941
YP_009302074.1 NC_031241_p56 hypothetical protein phrog_201 Panton-Valentine leukocicin DNA, RNA and nucleotide metabolism 1 38371 38730
YP_009302039.1 NC_031241_p21 hypothetical protein phrog_1766 tail fiber protein tail 1 19579 19938
YP_009302050.1 NC_031241_p32 hypothetical protein phrog_27855 unknown function unknown function -1 28693 29175
YP_009302060.1 NC_031241_p42 hypothetical protein phrog_3785 unknown function unknown function 1 32408 32521
YP_009302075.1 NC_031241_p57 hypothetical protein phrog_1689 nucleotide kinase other 1 38727 39161
YP_009302082.1 NC_031241_p64 hypothetical protein singleton unknown function unknown function 1 41271 41504
YP_009302025.1 NC_031241_p7 hypothetical protein phrog_422 major head protein head and packaging 1 5215 6204
YP_009302077.1 NC_031241_p59 hypothetical protein phrog_3683 unknown function unknown function 1 39841 40026
YP_009302053.1 NC_031241_p35 CI-like repressor phrog_8 transcriptional regulator transcription regulation -1 30146 30469
YP_009302086.1 NC_031241_p68 hypothetical protein phrog_1367 unknown function unknown function 1 42524 42664
YP_009302043.1 NC_031241_p25 tail fiber protein phrog_257 minor tail protein tail 1 22518 23501
YP_009302019.1 NC_031241_p1 terminase small subunit phrog_51 terminase small subunit head and packaging 1 245 679
YP_009302020.1 NC_031241_p2 terminase large subunit phrog_2 terminase large subunit head and packaging 1 663 1928
YP_009302069.1 NC_031241_p51 DNA helicase phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism 1 36080 37315
YP_009302070.1 NC_031241_p52 hypothetical protein phrog_3161 unknown function unknown function 1 37312 37533
YP_009302061.1 NC_031241_p43 hypothetical protein phrog_5815 unknown function unknown function 1 32518 32694