| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_031241 |
Definition |
Staphylococcus phage CNPx, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Phietavirus; unclassified Phietavirus. |
DB of origin |
REFSEQ |
Length |
43293 |
Host Name |
Staphylococcus epidermidis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
69 |
%GC |
34.66 |
Number of singletons |
1 |
Number of paralogs |
3 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009302028.1 | NC_031241_p10 | head-tail adaptor | phrog_25 | head closure Hc1 | connector | 1 | 6818 | 7147 |
| YP_009302068.1 | NC_031241_p50 | hypothetical protein | phrog_2289 | helicase loader | DNA, RNA and nucleotide metabolism | 1 | 35728 | 36087 |
| YP_009302072.1 | NC_031241_p54 | holliday junction resolvase | phrog_140 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 37765 | 38172 |
| YP_009302026.1 | NC_031241_p8 | transcriptional terminator | phrog_390 | Arc-like repressor | transcription regulation | 1 | 6221 | 6511 |
| YP_009302051.1 | NC_031241_p33 | hypothetical protein | phrog_5375 | unknown function | unknown function | -1 | 29177 | 29653 |
| YP_009302063.1 | NC_031241_p45 | hypothetical protein | phrog_946 | unknown function | unknown function | 1 | 33001 | 33225 |
| YP_009302067.1 | NC_031241_p49 | replication initiation protein | phrog_186 | DnaD-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 34934 | 35728 |
| YP_009302054.1 | NC_031241_p36 | hypothetical protein | phrog_3 | transcriptional repressor | transcription regulation | 1 | 30633 | 30881 |
| YP_009302085.1 | NC_031241_p67 | hypothetical protein | phrog_2409 | unknown function | unknown function | 1 | 42138 | 42536 |
| YP_009302047.1 | NC_031241_p29 | lysin | phrog_489 | endolysin | lysis | 1 | 24332 | 25714 |
| YP_009302078.1 | NC_031241_p60 | nuclease family protein | phrog_452 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 40014 | 40370 |
| YP_009302045.1 | NC_031241_p27 | hypothetical protein | phrog_134 | unknown function | unknown function | 1 | 23859 | 24005 |
| YP_009302042.1 | NC_031241_p24 | bifunctional autolysin Atl/N-acetylmuramoyl-L-alanine amidase/endo-beta-N-acetylglucosaminidase | phrog_759 | tail associated cell-wall hydrolase | other | 1 | 20555 | 22465 |
| YP_009302087.1 | NC_031241_p69 | transcriptional regulator | phrog_36 | transcriptional regulator | transcription regulation | 1 | 42667 | 43083 |
| YP_009302038.1 | NC_031241_p20 | hypothetical protein | phrog_257 | minor tail protein | tail | 1 | 18063 | 19595 |
| YP_009302041.1 | NC_031241_p23 | hypothetical protein | phrog_276 | unknown function | unknown function | 1 | 20117 | 20416 |
| YP_009302062.1 | NC_031241_p44 | hypothetical protein | phrog_7824 | unknown function | unknown function | 1 | 32754 | 33029 |
| YP_009302080.1 | NC_031241_p62 | hypothetical protein | phrog_8714 | unknown function | unknown function | 1 | 40637 | 40816 |
| YP_009302031.1 | NC_031241_p13 | hypothetical protein | phrog_238 | major tail protein | tail | 1 | 7990 | 8529 |
| YP_009302056.1 | NC_031241_p38 | hypothetical protein | phrog_13376 | unknown function | unknown function | -1 | 31016 | 31186 |
| YP_009302081.1 | NC_031241_p63 | deoxyuridine 5'-triphosphatenucleotidohydrolase | phrog_135 | dUTPase | DNA, RNA and nucleotide metabolism | 1 | 40809 | 41234 |
| YP_009302048.1 | NC_031241_p30 | hypothetical protein | phrog_4538 | unknown function | unknown function | 1 | 25781 | 26941 |
| YP_009302065.1 | NC_031241_p47 | single-stranded DNA-binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 33837 | 34253 |
| YP_009302073.1 | NC_031241_p55 | transcriptional regulator | phrog_13968 | transcriptional regulator | transcription regulation | 1 | 38173 | 38370 |
| YP_009302021.1 | NC_031241_p3 | portal protein | phrog_64 | portal protein | head and packaging | 1 | 1934 | 3370 |
| YP_009302032.1 | NC_031241_p14 | hypothetical protein | phrog_183 | tail chaperone protein | tail | 1 | 8592 | 9086 |
| YP_009302052.1 | NC_031241_p34 | hypothetical protein | phrog_87 | metallo-protease | other | -1 | 29673 | 30134 |
| YP_009302029.1 | NC_031241_p11 | capsid and scaffold protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 7140 | 7553 |
| YP_009302064.1 | NC_031241_p46 | hypothetical protein | phrog_659 | Sak-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 33218 | 33844 |
| YP_009302058.1 | NC_031241_p40 | hypothetical protein | phrog_16149 | unknown function | unknown function | 1 | 32005 | 32169 |
| YP_009302040.1 | NC_031241_p22 | hypothetical protein | phrog_134 | unknown function | unknown function | 1 | 19940 | 20080 |
| YP_009302022.1 | NC_031241_p4 | minor capsid protein | phrog_115 | minor head protein | head and packaging | 1 | 3327 | 4280 |
| YP_009302027.1 | NC_031241_p9 | capsid and scaffold protein | phrog_1161 | head-tail adaptor | connector | 1 | 6511 | 6825 |
| YP_009302057.1 | NC_031241_p39 | antirepressor protein | phrog_63 | anti-repressor Ant | transcription regulation | 1 | 31235 | 32002 |
| YP_009302071.1 | NC_031241_p53 | hypothetical protein | phrog_433 | unknown function | unknown function | 1 | 37511 | 37756 |
| YP_009302046.1 | NC_031241_p28 | holin | phrog_263 | holin | lysis | 1 | 24060 | 24332 |
| YP_009302037.1 | NC_031241_p19 | neck protein | phrog_4775 | pre-neck appendage protein | connector | 1 | 15397 | 18063 |
| YP_009302024.1 | NC_031241_p6 | capsid and scaffold protein | phrog_194 | head scaffolding protein | head and packaging | 1 | 4709 | 5233 |
| YP_009302049.1 | NC_031241_p31 | hypothetical protein | phrog_95 | integrase | integration and excision | -1 | 27263 | 28639 |
| YP_009302044.1 | NC_031241_p26 | hypothetical protein | phrog_1766 | tail fiber protein | tail | 1 | 23513 | 23866 |
| YP_009302035.1 | NC_031241_p17 | hypothetical protein | phrog_33 | distal tail protein Dit | tail | 1 | 12574 | 13512 |
| YP_009302084.1 | NC_031241_p66 | transcriptional regulator | phrog_152 | RinB-like transcriptional activator | transcription regulation | 1 | 41762 | 41932 |
| YP_009302033.1 | NC_031241_p15 | hypothetical protein | phrog_1404 | tail protein | tail | 1 | 9149 | 9451 |
| YP_009302034.1 | NC_031241_p16 | tail length tape-measure protein | phrog_58 | tail length tape measure protein | tail | 1 | 9454 | 12558 |
| YP_009302079.1 | NC_031241_p61 | hypothetical protein | phrog_4380 | unknown function | unknown function | 1 | 40374 | 40607 |
| YP_009302030.1 | NC_031241_p12 | hypothetical protein | phrog_176 | tail terminator | connector | 1 | 7566 | 8003 |
| YP_009302076.1 | NC_031241_p58 | HNH homing endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 39164 | 39844 |
| YP_009302055.1 | NC_031241_p37 | hypothetical protein | phrog_6431 | unknown function | unknown function | 1 | 30894 | 31055 |
| YP_009302036.1 | NC_031241_p18 | minor structural protein | phrog_663 | minor head protein | head and packaging | 1 | 13526 | 15382 |
| YP_009302059.1 | NC_031241_p41 | hypothetical protein | phrog_14955 | unknown function | unknown function | -1 | 32155 | 32361 |
| YP_009302023.1 | NC_031241_p5 | tail length tape-measure protein | phrog_2881 | dCMP hydroxymethylase | DNA, RNA and nucleotide metabolism | 1 | 4388 | 4594 |
| YP_009302083.1 | NC_031241_p65 | hypothetical protein | phrog_24716 | unknown function | unknown function | 1 | 41514 | 41765 |
| YP_009302066.1 | NC_031241_p48 | hypothetical protein | phrog_398 | unknown function | unknown function | 1 | 34267 | 34941 |
| YP_009302074.1 | NC_031241_p56 | hypothetical protein | phrog_201 | Panton-Valentine leukocicin | DNA, RNA and nucleotide metabolism | 1 | 38371 | 38730 |
| YP_009302039.1 | NC_031241_p21 | hypothetical protein | phrog_1766 | tail fiber protein | tail | 1 | 19579 | 19938 |
| YP_009302050.1 | NC_031241_p32 | hypothetical protein | phrog_27855 | unknown function | unknown function | -1 | 28693 | 29175 |
| YP_009302060.1 | NC_031241_p42 | hypothetical protein | phrog_3785 | unknown function | unknown function | 1 | 32408 | 32521 |
| YP_009302075.1 | NC_031241_p57 | hypothetical protein | phrog_1689 | nucleotide kinase | other | 1 | 38727 | 39161 |
| YP_009302082.1 | NC_031241_p64 | hypothetical protein | singleton | unknown function | unknown function | 1 | 41271 | 41504 |
| YP_009302025.1 | NC_031241_p7 | hypothetical protein | phrog_422 | major head protein | head and packaging | 1 | 5215 | 6204 |
| YP_009302077.1 | NC_031241_p59 | hypothetical protein | phrog_3683 | unknown function | unknown function | 1 | 39841 | 40026 |
| YP_009302053.1 | NC_031241_p35 | CI-like repressor | phrog_8 | transcriptional regulator | transcription regulation | -1 | 30146 | 30469 |
| YP_009302086.1 | NC_031241_p68 | hypothetical protein | phrog_1367 | unknown function | unknown function | 1 | 42524 | 42664 |
| YP_009302043.1 | NC_031241_p25 | tail fiber protein | phrog_257 | minor tail protein | tail | 1 | 22518 | 23501 |
| YP_009302019.1 | NC_031241_p1 | terminase small subunit | phrog_51 | terminase small subunit | head and packaging | 1 | 245 | 679 |
| YP_009302020.1 | NC_031241_p2 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 663 | 1928 |
| YP_009302069.1 | NC_031241_p51 | DNA helicase | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 36080 | 37315 |
| YP_009302070.1 | NC_031241_p52 | hypothetical protein | phrog_3161 | unknown function | unknown function | 1 | 37312 | 37533 |
| YP_009302061.1 | NC_031241_p43 | hypothetical protein | phrog_5815 | unknown function | unknown function | 1 | 32518 | 32694 |