| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_031249 |
Definition |
Gordonia phage UmaThurman, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
50127 |
Host Name |
Gordonia terrae |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
83 |
%GC |
67.02 |
Number of singletons |
5 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009302847.1 | NC_031249_p11 | head-to-tail connector protein | phrog_9658 | head-tail connector protein | connector | 1 | 7697 | 7984 |
| YP_009302901.1 | NC_031249_p65 | hypothetical protein | phrog_11360 | unknown function | unknown function | 1 | 41987 | 42208 |
| YP_009302844.1 | NC_031249_p8 | head-to-tail connector protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 6567 | 6959 |
| YP_009302886.1 | NC_031249_p50 | hypothetical protein | phrog_9981 | unknown function | unknown function | 1 | 36500 | 36688 |
| YP_009302904.1 | NC_031249_p68 | hypothetical protein | phrog_22267 | transcriptional regulator WhiB-like | transcription regulation | 1 | 43634 | 43903 |
| YP_009302873.1 | NC_031249_p37 | excise | phrog_66 | excisionase and transcriptional regulator | integration and excision | 1 | 31748 | 31954 |
| YP_009302853.1 | NC_031249_p17 | tape measure protein | phrog_4197 | tail length tape measure protein | tail | 1 | 10381 | 15924 |
| YP_009302852.1 | NC_031249_p16 | tail assembly chaperone | phrog_5010 | tail assembly chaperone | tail | 1 | 9527 | 9937 |
| YP_009302914.1 | NC_031249_p78 | hypothetical protein | phrog_7217 | unknown function | unknown function | 1 | 47249 | 47482 |
| YP_009302875.1 | NC_031249_p39 | hypothetical protein | phrog_4652 | unknown function | unknown function | 1 | 32723 | 33346 |
| YP_009302911.1 | NC_031249_p75 | hypothetical protein | singleton | unknown function | unknown function | 1 | 45974 | 46447 |
| YP_009302843.1 | NC_031249_p7 | head-to-tail connector protein | phrog_2322 | head-tail connector protein | connector | 1 | 6142 | 6570 |
| YP_009302887.1 | NC_031249_p51 | hypothetical protein | phrog_1622 | unknown function | unknown function | 1 | 36685 | 36999 |
| YP_009302877.1 | NC_031249_p41 | hypothetical protein | phrog_15946 | unknown function | unknown function | 1 | 33701 | 34123 |
| YP_009302908.1 | NC_031249_p72 | hypothetical protein | phrog_2857 | tail fiber protein | tail | 1 | 45236 | 45532 |
| YP_009302840.1 | NC_031249_p4 | capsid maturation protease | phrog_3894 | head maturation protease | head and packaging | 1 | 3316 | 4728 |
| YP_009302872.1 | NC_031249_p36 | immunity repressor | phrog_2328 | transcriptional repressor | transcription regulation | -1 | 31237 | 31566 |
| YP_009302906.1 | NC_031249_p70 | hypothetical protein | phrog_2118 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 44054 | 44461 |
| YP_009302876.1 | NC_031249_p40 | hypothetical protein | singleton | unknown function | unknown function | 1 | 33362 | 33685 |
| YP_009302912.1 | NC_031249_p76 | hypothetical protein | phrog_159 | RuvC-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 46447 | 47037 |
| YP_009302857.1 | NC_031249_p21 | lysin A | phrog_3084 | endolysin | lysis | 1 | 19145 | 20056 |
| YP_009302862.1 | NC_031249_p26 | minor tail protein | phrog_9406 | unknown function | unknown function | 1 | 22077 | 22451 |
| YP_009302869.1 | NC_031249_p33 | hypothetical protein | phrog_3 | transcriptional repressor | transcription regulation | 1 | 29524 | 29805 |
| YP_009302885.1 | NC_031249_p49 | hypothetical protein | phrog_5984 | unknown function | unknown function | 1 | 36168 | 36503 |
| YP_009302863.1 | NC_031249_p27 | minor tail protein | phrog_4120 | minor tail protein | tail | 1 | 22444 | 23511 |
| YP_009302837.1 | NC_031249_p1 | terminase small subunit | phrog_1496 | terminase small subunit | head and packaging | 1 | 56 | 397 |
| YP_009302893.1 | NC_031249_p57 | hypothetical protein | phrog_8105 | unknown function | unknown function | 1 | 40006 | 40257 |
| YP_009302895.1 | NC_031249_p59 | hypothetical protein | phrog_8336 | unknown function | unknown function | 1 | 40450 | 40944 |
| YP_009302859.1 | NC_031249_p23 | membrane protein | phrog_11800 | membrane protein | moron, auxiliary metabolic gene and host takeover | 1 | 20584 | 20838 |
| YP_009302851.1 | NC_031249_p15 | tail assembly chaperone | phrog_8183 | tail assembly chaperone | tail | 1 | 9527 | 10311 |
| YP_009302918.1 | NC_031249_p82 | hypothetical protein | phrog_21675 | unknown function | unknown function | 1 | 48754 | 49467 |
| YP_009302889.1 | NC_031249_p53 | hypothetical protein | phrog_572 | unknown function | unknown function | 1 | 37358 | 37711 |
| YP_009302868.1 | NC_031249_p32 | hypothetical protein | phrog_5392 | unknown function | unknown function | -1 | 29123 | 29419 |
| YP_009302865.1 | NC_031249_p29 | minor tail protein | phrog_8055 | unknown function | unknown function | 1 | 25025 | 25360 |
| YP_009302907.1 | NC_031249_p71 | hypothetical protein | phrog_2447 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 44454 | 45239 |
| YP_009302870.1 | NC_031249_p34 | hypothetical protein | singleton | unknown function | unknown function | -1 | 29936 | 30196 |
| YP_009302910.1 | NC_031249_p74 | hypothetical protein | phrog_27386 | unknown function | unknown function | 1 | 45816 | 45977 |
| YP_009302897.1 | NC_031249_p61 | hypothetical protein | phrog_10682 | unknown function | unknown function | 1 | 41127 | 41315 |
| YP_009302861.1 | NC_031249_p25 | lysin B | phrog_102 | endolysin | lysis | 1 | 21277 | 22080 |
| YP_009302855.1 | NC_031249_p19 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 16778 | 18424 |
| YP_009302884.1 | NC_031249_p48 | hypothetical protein | phrog_19919 | unknown function | unknown function | 1 | 35749 | 36171 |
| YP_009302883.1 | NC_031249_p47 | hypothetical protein | phrog_11014 | unknown function | unknown function | 1 | 35528 | 35752 |
| YP_009302915.1 | NC_031249_p79 | hypothetical protein | phrog_12987 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 47479 | 47664 |
| YP_009302871.1 | NC_031249_p35 | integrase | phrog_1 | integrase | integration and excision | -1 | 30235 | 31152 |
| YP_009302891.1 | NC_031249_p55 | exonuclease | phrog_434 | RecE-like recombination exonuclease | DNA, RNA and nucleotide metabolism | 1 | 38004 | 38933 |
| YP_009302856.1 | NC_031249_p20 | lysin A | phrog_1512 | endolysin | lysis | 1 | 18441 | 19145 |
| YP_009302858.1 | NC_031249_p22 | membrane protein | phrog_443 | holin | lysis | 1 | 20059 | 20520 |
| YP_009302867.1 | NC_031249_p31 | hypothetical protein | phrog_6153 | unknown function | unknown function | -1 | 28508 | 28735 |
| YP_009302903.1 | NC_031249_p67 | hypothetical protein | phrog_67 | DNA methyltransferase | other | 1 | 42612 | 43637 |
| YP_009302902.1 | NC_031249_p66 | hypothetical protein | phrog_12575 | unknown function | unknown function | 1 | 42205 | 42615 |
| YP_009302874.1 | NC_031249_p38 | hypothetical protein | singleton | unknown function | unknown function | 1 | 31954 | 32607 |
| YP_009302890.1 | NC_031249_p54 | hypothetical protein | phrog_2857 | tail fiber protein | tail | 1 | 37708 | 38007 |
| YP_009302905.1 | NC_031249_p69 | hypothetical protein | phrog_10260 | unknown function | unknown function | 1 | 43900 | 44064 |
| YP_009302841.1 | NC_031249_p5 | scaffolding protein | phrog_673 | head scaffolding protein | head and packaging | 1 | 4730 | 5182 |
| YP_009302854.1 | NC_031249_p18 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 15921 | 16781 |
| YP_009302845.1 | NC_031249_p9 | head-to-tail connector protein | phrog_501 | head closure Hc1 | connector | 1 | 6959 | 7321 |
| YP_009302879.1 | NC_031249_p43 | hypothetical protein | phrog_6554 | unknown function | unknown function | 1 | 34287 | 34469 |
| YP_009302894.1 | NC_031249_p58 | hypothetical protein | phrog_12075 | membrane protein | moron, auxiliary metabolic gene and host takeover | 1 | 40254 | 40466 |
| YP_009302860.1 | NC_031249_p24 | membrane protein | phrog_10261 | membrane protein | moron, auxiliary metabolic gene and host takeover | 1 | 20825 | 21283 |
| YP_009302850.1 | NC_031249_p14 | major tail protein | phrog_117 | major tail protein | tail | 1 | 8786 | 9424 |
| YP_009302882.1 | NC_031249_p46 | hypothetical protein | phrog_28200 | unknown function | unknown function | 1 | 35085 | 35531 |
| YP_009302864.1 | NC_031249_p28 | minor tail protein | phrog_737 | minor tail protein | tail | 1 | 23511 | 25025 |
| YP_009302892.1 | NC_031249_p56 | ssDNA binding protein | phrog_2780 | RecT-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 38930 | 40009 |
| YP_009302838.1 | NC_031249_p2 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 360 | 1928 |
| YP_009302896.1 | NC_031249_p60 | hypothetical protein | phrog_10784 | membrane protein | moron, auxiliary metabolic gene and host takeover | 1 | 40948 | 41130 |
| YP_009302916.1 | NC_031249_p80 | hypothetical protein | phrog_908 | unknown function | unknown function | 1 | 47661 | 48437 |
| YP_009302881.1 | NC_031249_p45 | hypothetical protein | phrog_9909 | unknown function | unknown function | 1 | 34786 | 35088 |
| YP_009302878.1 | NC_031249_p42 | hypothetical protein | phrog_8218 | unknown function | unknown function | 1 | 34120 | 34287 |
| YP_009302866.1 | NC_031249_p30 | minor tail protein | phrog_36751 | minor tail protein | tail | 1 | 25353 | 28478 |
| YP_009302917.1 | NC_031249_p81 | hypothetical protein | phrog_29880 | unknown function | unknown function | 1 | 48434 | 48757 |
| YP_009302842.1 | NC_031249_p6 | major capsid protein | phrog_1650 | major head protein | head and packaging | 1 | 5209 | 6138 |
| YP_009302913.1 | NC_031249_p77 | hypothetical protein | singleton | unknown function | unknown function | 1 | 47034 | 47252 |
| YP_009302909.1 | NC_031249_p73 | hypothetical protein | phrog_16913 | unknown function | unknown function | 1 | 45529 | 45819 |
| YP_009302880.1 | NC_031249_p44 | hypothetical protein | phrog_9588 | unknown function | unknown function | 1 | 34466 | 34789 |
| YP_009302898.1 | NC_031249_p62 | hypothetical protein | phrog_20668 | unknown function | unknown function | 1 | 41312 | 41485 |
| YP_009302839.1 | NC_031249_p3 | portal protein | phrog_113 | portal protein | head and packaging | 1 | 1940 | 3316 |
| YP_009302888.1 | NC_031249_p52 | hypothetical protein | phrog_6877 | unknown function | unknown function | 1 | 36996 | 37358 |
| YP_009302900.1 | NC_031249_p64 | hypothetical protein | phrog_10015 | unknown function | unknown function | 1 | 41829 | 41990 |
| YP_009302848.1 | NC_031249_p12 | head-to-tail connector protein | phrog_5837 | head closure Hc1 | connector | 1 | 7977 | 8264 |
| YP_009302849.1 | NC_031249_p13 | head-to-tail connector protein | phrog_123 | tail terminator | connector | 1 | 8261 | 8680 |
| YP_009302899.1 | NC_031249_p63 | hypothetical protein | phrog_986 | RNA-binding protein | DNA, RNA and nucleotide metabolism | 1 | 41482 | 41829 |
| YP_009302919.1 | NC_031249_p83 | HNH endonuclease | phrog_1808 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 49697 | 50059 |
| YP_009302846.1 | NC_031249_p10 | hypothetical protein | phrog_6910 | unknown function | unknown function | 1 | 7330 | 7695 |