| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_031250 |
Definition |
Salmonella phage BP63, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Rosemountvirus; Salmonella virus BP63. |
DB of origin |
REFSEQ |
Length |
52437 |
Host Name |
Salmonella enterica |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
76 |
%GC |
46.02 |
Number of singletons |
6 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009302935.1 | NC_031250_p16 | thymidylate kinase | phrog_761 | thymidylate kinase | other | 1 | 5705 | 6211 |
| YP_009302956.1 | NC_031250_p37 | hypothetical protein | phrog_817 | tail fiber protein | tail | 1 | 24880 | 25776 |
| YP_009302977.1 | NC_031250_p58 | hypothetical protein | singleton | unknown function | unknown function | -1 | 39109 | 39273 |
| YP_009302924.1 | NC_031250_p5 | hypothetical protein | phrog_10979 | membrane protein | moron, auxiliary metabolic gene and host takeover | -1 | 1229 | 1354 |
| YP_009302974.1 | NC_031250_p55 | thymidylate synthase | phrog_160 | thymidylate synthase | DNA, RNA and nucleotide metabolism | -1 | 37219 | 38103 |
| YP_009302991.1 | NC_031250_p72 | hypothetical protein | phrog_2480 | unknown function | unknown function | -1 | 48052 | 48501 |
| YP_009302973.1 | NC_031250_p54 | DNA polymerase beta subunit | phrog_947 | DNA polymerase processivity factor | DNA, RNA and nucleotide metabolism | -1 | 36193 | 37188 |
| YP_009302945.1 | NC_031250_p26 | hypothetical protein | phrog_939 | head protein | head and packaging | 1 | 13667 | 14044 |
| YP_009302944.1 | NC_031250_p25 | hypothetical protein | phrog_222 | tail completion or Neck1 protein | connector | 1 | 13179 | 13667 |
| YP_009302926.1 | NC_031250_p7 | hypothetical protein | phrog_37772 | unknown function | unknown function | -1 | 1616 | 2005 |
| YP_009302933.1 | NC_031250_p14 | hypothetical protein | phrog_1365 | unknown function | unknown function | 1 | 4557 | 5033 |
| YP_009302923.1 | NC_031250_p4 | hypothetical protein | phrog_28081 | unknown function | unknown function | -1 | 1050 | 1217 |
| YP_009302967.1 | NC_031250_p48 | lysozyme | phrog_7 | endolysin | lysis | 1 | 32679 | 33185 |
| YP_009302952.1 | NC_031250_p33 | hypothetical protein | phrog_280 | virion structural protein | head and packaging | 1 | 22160 | 22591 |
| YP_009302989.1 | NC_031250_p70 | hypothetical protein | phrog_22331 | unknown function | unknown function | -1 | 47310 | 47600 |
| YP_009302930.1 | NC_031250_p11 | hypothetical protein | phrog_9997 | unknown function | unknown function | -1 | 2731 | 3297 |
| YP_009302981.1 | NC_031250_p62 | hypothetical protein | phrog_1990 | Cas4-domain exonuclease | DNA, RNA and nucleotide metabolism | -1 | 42271 | 43149 |
| YP_009302961.1 | NC_031250_p42 | hypothetical protein | phrog_6 | baseplate wedge subunit | tail | 1 | 28098 | 29270 |
| YP_009302954.1 | NC_031250_p35 | hypothetical protein | singleton | unknown function | unknown function | 1 | 23107 | 23220 |
| YP_009302925.1 | NC_031250_p6 | hypothetical protein | phrog_35966 | unknown function | unknown function | -1 | 1416 | 1616 |
| YP_009302993.1 | NC_031250_p74 | hypothetical protein | phrog_37966 | unknown function | unknown function | -1 | 48783 | 49220 |
| YP_009302957.1 | NC_031250_p38 | hypothetical protein | phrog_349 | virion structural protein | head and packaging | 1 | 25776 | 26168 |
| YP_009302951.1 | NC_031250_p32 | hypothetical protein | phrog_205 | tail sheath | tail | 1 | 21009 | 22148 |
| YP_009302971.1 | NC_031250_p52 | hypothetical protein | phrog_28954 | unknown function | unknown function | -1 | 33935 | 34210 |
| YP_009302946.1 | NC_031250_p27 | hypothetical protein | phrog_6920 | unknown function | unknown function | 1 | 13968 | 14495 |
| YP_009302987.1 | NC_031250_p68 | hypothetical protein | phrog_33391 | unknown function | unknown function | -1 | 46003 | 46908 |
| YP_009302985.1 | NC_031250_p66 | hypothetical protein | singleton | unknown function | unknown function | -1 | 45217 | 45447 |
| YP_009302990.1 | NC_031250_p71 | hypothetical protein | phrog_27896 | unknown function | unknown function | -1 | 47669 | 48007 |
| YP_009302978.1 | NC_031250_p59 | hypothetical protein | phrog_28664 | unknown function | unknown function | -1 | 39760 | 40227 |
| YP_009302983.1 | NC_031250_p64 | hypothetical protein | phrog_2300 | unknown function | unknown function | -1 | 43680 | 44225 |
| YP_009302969.1 | NC_031250_p50 | hypothetical protein | phrog_456 | Rz-like spanin | lysis | 1 | 33477 | 33695 |
| YP_009302960.1 | NC_031250_p41 | hypothetical protein | phrog_120 | baseplate wedge subunit | tail | 1 | 27727 | 28098 |
| YP_009302936.1 | NC_031250_p17 | hypothetical protein | phrog_37540 | unknown function | unknown function | 1 | 6208 | 6927 |
| YP_009302964.1 | NC_031250_p45 | hypothetical protein | phrog_136 | tail fiber assembly protein | tail | 1 | 31253 | 31795 |
| YP_009302986.1 | NC_031250_p67 | hypothetical protein | phrog_37080 | unknown function | unknown function | -1 | 45508 | 45954 |
| YP_009302939.1 | NC_031250_p20 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 7689 | 9137 |
| YP_009302947.1 | NC_031250_p28 | hypothetical protein | phrog_27998 | tail fiber protein | tail | 1 | 14495 | 15118 |
| YP_009302980.1 | NC_031250_p61 | DEAD box helicase | phrog_16 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 40542 | 42212 |
| YP_009302995.1 | NC_031250_p76 | primase | phrog_3022 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 49681 | 52215 |
| YP_009302972.1 | NC_031250_p53 | DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 34226 | 36193 |
| YP_009302942.1 | NC_031250_p23 | major capsid protein | phrog_247 | major head protein | head and packaging | 1 | 11596 | 12573 |
| YP_009302955.1 | NC_031250_p36 | hypothetical protein | phrog_29251 | tail length tape measure protein | tail | 1 | 23201 | 24883 |
| YP_009302943.1 | NC_031250_p24 | hypothetical protein | phrog_477 | head-tail adaptor Ad1 | connector | 1 | 12679 | 13179 |
| YP_009302959.1 | NC_031250_p40 | hypothetical protein | phrog_11 | baseplate spike | tail | 1 | 27069 | 27716 |
| YP_009302965.1 | NC_031250_p46 | hypothetical protein | phrog_136 | tail fiber assembly protein | tail | 1 | 31799 | 32302 |
| YP_009302920.1 | NC_031250_p1 | hypothetical protein | phrog_244 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 205 | 636 |
| YP_009302968.1 | NC_031250_p49 | hypothetical protein | phrog_214 | Rz-like spanin | lysis | 1 | 33164 | 33493 |
| YP_009302931.1 | NC_031250_p12 | hypothetical protein | singleton | unknown function | unknown function | -1 | 3393 | 3572 |
| YP_009302921.1 | NC_031250_p2 | hypothetical protein | phrog_32337 | unknown function | unknown function | -1 | 633 | 818 |
| YP_009302949.1 | NC_031250_p30 | hypothetical protein | phrog_215 | structural protein with Ig domain | head and packaging | 1 | 18143 | 18781 |
| YP_009302929.1 | NC_031250_p10 | hypothetical protein | phrog_35350 | unknown function | unknown function | -1 | 2508 | 2666 |
| YP_009302982.1 | NC_031250_p63 | deoxycytidylate deaminase | phrog_174 | dCMP deaminase | DNA, RNA and nucleotide metabolism | -1 | 43133 | 43618 |
| YP_009302941.1 | NC_031250_p22 | scaffold protein | phrog_206 | head scaffolding protein | head and packaging | 1 | 10879 | 11592 |
| YP_009302992.1 | NC_031250_p73 | hypothetical protein | singleton | unknown function | unknown function | -1 | 48404 | 48772 |
| YP_009302966.1 | NC_031250_p47 | hypothetical protein | phrog_1350 | holin | lysis | 1 | 32405 | 32665 |
| YP_009302940.1 | NC_031250_p21 | portal protein | phrog_145 | portal protein | head and packaging | 1 | 9139 | 10701 |
| YP_009302927.1 | NC_031250_p8 | hypothetical protein | phrog_29626 | unknown function | unknown function | -1 | 2075 | 2248 |
| YP_009302948.1 | NC_031250_p29 | tail protein | phrog_2871 | tail protein | tail | 1 | 15118 | 18075 |
| YP_009302975.1 | NC_031250_p56 | hypothetical protein | phrog_671 | nucleotide pyrophosphohydrolase | other | -1 | 38103 | 38696 |
| YP_009302928.1 | NC_031250_p9 | hypothetical protein | phrog_35114 | unknown function | unknown function | -1 | 2245 | 2502 |
| YP_009302970.1 | NC_031250_p51 | hypothetical protein | phrog_54 | DksA-like zinc-finger protein | other | -1 | 33711 | 33935 |
| YP_009302979.1 | NC_031250_p60 | hypothetical protein | phrog_23504 | unknown function | unknown function | -1 | 40334 | 40555 |
| YP_009302938.1 | NC_031250_p19 | hypothetical protein | phrog_38712 | unknown function | unknown function | 1 | 7395 | 7685 |
| YP_009302988.1 | NC_031250_p69 | hypothetical protein | phrog_28927 | unknown function | unknown function | -1 | 47023 | 47313 |
| YP_009302984.1 | NC_031250_p65 | hypothetical protein | phrog_124 | Sak4-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 44333 | 45217 |
| YP_009302934.1 | NC_031250_p15 | hypothetical protein | phrog_316 | dihydrofolate reductase | DNA, RNA and nucleotide metabolism | 1 | 5034 | 5708 |
| YP_009302922.1 | NC_031250_p3 | hypothetical protein | phrog_34345 | unknown function | unknown function | -1 | 815 | 994 |
| YP_009302976.1 | NC_031250_p57 | hypothetical protein | phrog_36727 | unknown function | unknown function | -1 | 38683 | 39081 |
| YP_009302963.1 | NC_031250_p44 | hypothetical protein | phrog_30316 | tail fiber protein | tail | 1 | 29909 | 31243 |
| YP_009302962.1 | NC_031250_p43 | hypothetical protein | phrog_587 | structural protein | head and packaging | 1 | 29263 | 29916 |
| YP_009302932.1 | NC_031250_p13 | hypothetical protein | singleton | unknown function | unknown function | -1 | 3587 | 3736 |
| YP_009302953.1 | NC_031250_p34 | hypothetical protein | phrog_6419 | unknown function | unknown function | 1 | 22610 | 23038 |
| YP_009302950.1 | NC_031250_p31 | hypothetical protein | phrog_28902 | major tail protein | tail | 1 | 18793 | 20922 |
| YP_009302958.1 | NC_031250_p39 | hypothetical protein | phrog_196 | baseplate hub | tail | 1 | 26110 | 27069 |
| YP_009302937.1 | NC_031250_p18 | hypothetical protein | phrog_29999 | unknown function | unknown function | 1 | 6927 | 7217 |
| YP_009302994.1 | NC_031250_p75 | hypothetical protein | phrog_28429 | unknown function | unknown function | 1 | 49374 | 49706 |