| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_031251 |
Definition |
Gordonia phage SoilAssassin, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Attisvirus; unclassified Attisvirus. |
DB of origin |
REFSEQ |
Length |
47880 |
Host Name |
Gordonia terrae |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
74 |
%GC |
66.81 |
Number of singletons |
3 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009303059.1 | NC_031251_p64 | HNH endonuclease | phrog_1492 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 43104 | 43649 |
| YP_009303046.1 | NC_031251_p51 | exonuclease | phrog_412 | exonuclease VIII | DNA, RNA and nucleotide metabolism | 1 | 35972 | 36847 |
| YP_009303004.1 | NC_031251_p9 | hypothetical protein | phrog_3881 | head-tail connector protein | connector | 1 | 6508 | 6834 |
| YP_009303026.1 | NC_031251_p31 | hypothetical protein | phrog_18428 | unknown function | unknown function | -1 | 26035 | 26388 |
| YP_009303042.1 | NC_031251_p47 | hypothetical protein | phrog_204 | unknown function | unknown function | 1 | 34034 | 34456 |
| YP_009303060.1 | NC_031251_p65 | hypothetical protein | phrog_2149 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 43650 | 44540 |
| YP_009303045.1 | NC_031251_p50 | hypothetical protein | phrog_2857 | tail fiber protein | tail | 1 | 35667 | 35975 |
| YP_009303021.1 | NC_031251_p26 | hypothetical protein | phrog_36698 | unknown function | unknown function | 1 | 22006 | 22284 |
| YP_009303047.1 | NC_031251_p52 | ssDNA binding protein | phrog_4171 | RecT-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 36844 | 37989 |
| YP_009303013.1 | NC_031251_p18 | lysin A | phrog_2998 | endolysin | lysis | 1 | 16527 | 17654 |
| YP_009303048.1 | NC_031251_p53 | hypothetical protein | phrog_15664 | unknown function | unknown function | 1 | 37986 | 38855 |
| YP_009303043.1 | NC_031251_p48 | hypothetical protein | phrog_210 | unknown function | unknown function | 1 | 34460 | 35311 |
| YP_009303053.1 | NC_031251_p58 | hypothetical protein | phrog_7793 | unknown function | unknown function | 1 | 40272 | 40415 |
| YP_009303025.1 | NC_031251_p30 | hypothetical protein | phrog_35745 | unknown function | unknown function | -1 | 25461 | 25985 |
| YP_009303037.1 | NC_031251_p42 | hypothetical protein | phrog_17511 | unknown function | unknown function | 1 | 31885 | 32433 |
| YP_009303068.1 | NC_031251_p73 | hypothetical protein | phrog_10381 | unknown function | unknown function | 1 | 47174 | 47503 |
| YP_009303064.1 | NC_031251_p69 | HTH DNA-binding domain protein | phrog_908 | unknown function | unknown function | 1 | 45644 | 46315 |
| YP_009302997.1 | NC_031251_p2 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 318 | 1889 |
| YP_009303069.1 | NC_031251_p74 | HNH endonuclease | phrog_1808 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 47513 | 47821 |
| YP_009303057.1 | NC_031251_p62 | hypothetical protein | singleton | unknown function | unknown function | 1 | 42332 | 42904 |
| YP_009302996.1 | NC_031251_p1 | terminase small subunit | phrog_1496 | terminase small subunit | head and packaging | 1 | 14 | 346 |
| YP_009303039.1 | NC_031251_p44 | hypothetical protein | phrog_7723 | unknown function | unknown function | 1 | 33315 | 33542 |
| YP_009303020.1 | NC_031251_p25 | minor tail protein | phrog_2689 | minor tail protein | tail | 1 | 20498 | 22021 |
| YP_009303055.1 | NC_031251_p60 | hypothetical protein | phrog_464 | unknown function | unknown function | 1 | 40972 | 41337 |
| YP_009303008.1 | NC_031251_p13 | tail assembly chaperone | phrog_3860 | tail assembly chaperone | tail | 1 | 8361 | 9089 |
| YP_009303017.1 | NC_031251_p22 | membrane protein | phrog_2344 | unknown function | unknown function | 1 | 18967 | 19413 |
| YP_009302998.1 | NC_031251_p3 | portal protein | phrog_113 | portal protein | head and packaging | 1 | 1903 | 3252 |
| YP_009303056.1 | NC_031251_p61 | HTH DNA-binding protein | phrog_1590 | unknown function | unknown function | 1 | 41334 | 42335 |
| YP_009303029.1 | NC_031251_p34 | integrase | phrog_1 | integrase | integration and excision | 1 | 27695 | 28777 |
| YP_009303032.1 | NC_031251_p37 | hypothetical protein | phrog_5316 | unknown function | unknown function | -1 | 29642 | 29863 |
| YP_009303051.1 | NC_031251_p56 | hypothetical protein | phrog_1138 | unknown function | unknown function | 1 | 39407 | 40009 |
| YP_009303031.1 | NC_031251_p36 | MazE antitoxin | phrog_19414 | antitoxin from a toxin-antitoxin system | moron, auxiliary metabolic gene and host takeover | 1 | 29250 | 29564 |
| YP_009303036.1 | NC_031251_p41 | hypothetical protein | phrog_16839 | unknown function | unknown function | 1 | 31730 | 31888 |
| YP_009303023.1 | NC_031251_p28 | minor tail protein | phrog_8780 | minor tail protein | tail | 1 | 22589 | 24844 |
| YP_009303000.1 | NC_031251_p5 | scaffolding protein | phrog_673 | head scaffolding protein | head and packaging | 1 | 4464 | 4826 |
| YP_009303040.1 | NC_031251_p45 | hypothetical protein | phrog_1840 | excisionase | integration and excision | 1 | 33539 | 33829 |
| YP_009303009.1 | NC_031251_p14 | tail assembly chaperone | phrog_3860 | tail assembly chaperone | tail | 1 | 9070 | 9504 |
| YP_009303005.1 | NC_031251_p10 | hypothetical protein | phrog_556 | minor head protein | head and packaging | 1 | 6834 | 7160 |
| YP_009303022.1 | NC_031251_p27 | hypothetical protein | phrog_1126 | unknown function | unknown function | 1 | 22281 | 22592 |
| YP_009303050.1 | NC_031251_p55 | hypothetical protein | phrog_419 | unknown function | unknown function | 1 | 39034 | 39414 |
| YP_009303038.1 | NC_031251_p43 | antirepressor | phrog_130 | anti-repressor Ant | transcription regulation | 1 | 32482 | 33318 |
| YP_009303041.1 | NC_031251_p46 | hypothetical protein | phrog_9213 | unknown function | unknown function | 1 | 33826 | 34029 |
| YP_009303028.1 | NC_031251_p33 | hypothetical protein | phrog_25640 | unknown function | unknown function | -1 | 26824 | 27393 |
| YP_009303066.1 | NC_031251_p71 | hypothetical protein | phrog_23771 | unknown function | unknown function | 1 | 46619 | 46807 |
| YP_009303019.1 | NC_031251_p24 | lysin B | phrog_102 | endolysin | lysis | 1 | 19791 | 20498 |
| YP_009303003.1 | NC_031251_p8 | hypothetical protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 6128 | 6511 |
| YP_009303034.1 | NC_031251_p39 | immunity repressor | phrog_6288 | unknown function | unknown function | -1 | 30342 | 31301 |
| YP_009303027.1 | NC_031251_p32 | hypothetical protein | phrog_17063 | toxin | moron, auxiliary metabolic gene and host takeover | -1 | 26388 | 26624 |
| YP_009303044.1 | NC_031251_p49 | hypothetical protein | phrog_6877 | unknown function | unknown function | 1 | 35308 | 35670 |
| YP_009303014.1 | NC_031251_p19 | hypothetical protein | phrog_19300 | unknown function | unknown function | 1 | 17679 | 18002 |
| YP_009303067.1 | NC_031251_p72 | hypothetical protein | phrog_9543 | unknown function | unknown function | 1 | 46800 | 47177 |
| YP_009303052.1 | NC_031251_p57 | hypothetical protein | singleton | unknown function | unknown function | 1 | 40006 | 40275 |
| YP_009303016.1 | NC_031251_p21 | hypothetical protein | phrog_2272 | unknown function | unknown function | 1 | 18545 | 18967 |
| YP_009303006.1 | NC_031251_p11 | hypothetical protein | phrog_2595 | head-tail connector protein | connector | 1 | 7161 | 7622 |
| YP_009303007.1 | NC_031251_p12 | major tail subunit | phrog_3884 | major tail protein | tail | 1 | 7619 | 8356 |
| YP_009303033.1 | NC_031251_p38 | hypothetical protein | phrog_87 | metallo-protease | other | -1 | 29863 | 30279 |
| YP_009303011.1 | NC_031251_p16 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 13903 | 14751 |
| YP_009303035.1 | NC_031251_p40 | HTH DNA-binding protein | phrog_6463 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 31416 | 31733 |
| YP_009303001.1 | NC_031251_p6 | major capsid subunit | phrog_1650 | major head protein | head and packaging | 1 | 4854 | 5777 |
| YP_009303065.1 | NC_031251_p70 | hypothetical protein | phrog_26578 | unknown function | unknown function | 1 | 46335 | 46607 |
| YP_009303061.1 | NC_031251_p66 | hypothetical protein | phrog_6055 | unknown function | unknown function | 1 | 44537 | 45031 |
| YP_009303030.1 | NC_031251_p35 | hypothetical protein | phrog_21927 | unknown function | unknown function | -1 | 28792 | 29166 |
| YP_009303063.1 | NC_031251_p68 | hypothetical protein | phrog_34 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 45279 | 45647 |
| YP_009302999.1 | NC_031251_p4 | capsid maturation protease | phrog_2976 | head maturation protease | head and packaging | 1 | 3246 | 4460 |
| YP_009303062.1 | NC_031251_p67 | hypothetical protein | phrog_14741 | unknown function | unknown function | 1 | 45028 | 45282 |
| YP_009303058.1 | NC_031251_p63 | hypothetical protein | phrog_10621 | unknown function | unknown function | 1 | 42905 | 43114 |
| YP_009303002.1 | NC_031251_p7 | head-to-tail connector protein | phrog_2322 | head-tail connector protein | connector | 1 | 5774 | 6121 |
| YP_009303015.1 | NC_031251_p20 | hypothetical protein | phrog_9752 | holin | lysis | 1 | 18033 | 18548 |
| YP_009303018.1 | NC_031251_p23 | membrane protein | phrog_19565 | membrane protein | moron, auxiliary metabolic gene and host takeover | 1 | 19417 | 19794 |
| YP_009303049.1 | NC_031251_p54 | hypothetical protein | phrog_10709 | unknown function | unknown function | 1 | 38852 | 39037 |
| YP_009303012.1 | NC_031251_p17 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 14751 | 16460 |
| YP_009303054.1 | NC_031251_p59 | hypothetical protein | singleton | unknown function | unknown function | 1 | 40412 | 40972 |
| YP_009303010.1 | NC_031251_p15 | tape measure protein | phrog_9228 | tail length tape measure protein | tail | 1 | 9497 | 13906 |
| YP_009303024.1 | NC_031251_p29 | hypothetical protein | phrog_7114 | minor tail protein | tail | 1 | 24850 | 25548 |