| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_031253 |
Definition |
Mycobacterium phage Bipper, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
77832 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
135 |
%GC |
67.34 |
Number of singletons |
62 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009303200.1 | NC_031253_p52 | hypothetical protein | singleton | unknown function | unknown function | 1 | 40411 | 40809 |
| YP_009303181.1 | NC_031253_p33 | lysin A amidase domain | singleton | unknown function | unknown function | 1 | 28999 | 29529 |
| YP_009303262.1 | NC_031253_p114 | hypothetical protein | singleton | unknown function | unknown function | 1 | 69240 | 69665 |
| YP_009303221.1 | NC_031253_p73 | hypothetical protein | singleton | unknown function | unknown function | 1 | 50020 | 50178 |
| YP_009303256.1 | NC_031253_p108 | hypothetical protein | singleton | unknown function | unknown function | 1 | 66479 | 66748 |
| YP_009303154.1 | NC_031253_p6 | QueE-like queosine biosynthesis protein | phrog_2076 | QueE-like radical SAM domain | moron, auxiliary metabolic gene and host takeover | 1 | 2984 | 3697 |
| YP_009303242.1 | NC_031253_p94 | hypothetical protein | phrog_464 | unknown function | unknown function | 1 | 60239 | 60613 |
| YP_009303279.1 | NC_031253_p131 | hypothetical protein | singleton | unknown function | unknown function | 1 | 75294 | 75482 |
| YP_009303232.1 | NC_031253_p84 | hypothetical protein | phrog_6055 | unknown function | unknown function | 1 | 55593 | 56150 |
| YP_009303165.1 | NC_031253_p17 | head-to-tail connector protein | phrog_387 | neck protein | connector | 1 | 11835 | 12083 |
| YP_009303183.1 | NC_031253_p35 | lysin B | phrog_102 | endolysin | lysis | 1 | 30012 | 31109 |
| YP_009303157.1 | NC_031253_p9 | terminase | phrog_9 | terminase large subunit | head and packaging | 1 | 4723 | 6342 |
| YP_009303172.1 | NC_031253_p24 | Minor tail protein | phrog_110 | minor tail protein | tail | 1 | 19740 | 21590 |
| YP_009303230.1 | NC_031253_p82 | hypothetical protein | singleton | unknown function | unknown function | 1 | 54271 | 54627 |
| YP_009303211.1 | NC_031253_p63 | RecE exonuclease | phrog_434 | RecE-like recombination exonuclease | DNA, RNA and nucleotide metabolism | 1 | 44977 | 45906 |
| YP_009303282.1 | NC_031253_p134 | hypothetical protein | phrog_11690 | tail protein | tail | 1 | 76603 | 77106 |
| YP_009303186.1 | NC_031253_p38 | hypothetical protein | singleton | unknown function | unknown function | -1 | 32062 | 32253 |
| YP_009303168.1 | NC_031253_p20 | tail assembly chaperone | phrog_3656 | tail assembly chaperone | tail | 1 | 13191 | 14053 |
| YP_009303222.1 | NC_031253_p74 | hypothetical protein | singleton | unknown function | unknown function | 1 | 50278 | 50688 |
| YP_009303250.1 | NC_031253_p102 | hypothetical protein | singleton | unknown function | unknown function | 1 | 63404 | 63940 |
| YP_009303188.1 | NC_031253_p40 | hypothetical protein | singleton | unknown function | unknown function | 1 | 32610 | 32864 |
| YP_009303228.1 | NC_031253_p80 | hypothetical protein | phrog_18249 | unknown function | unknown function | 1 | 53391 | 53822 |
| YP_009303216.1 | NC_031253_p68 | hypothetical protein | singleton | unknown function | unknown function | 1 | 48431 | 48637 |
| YP_009303265.1 | NC_031253_p117 | hypothetical protein | singleton | unknown function | unknown function | 1 | 70452 | 70880 |
| YP_009303231.1 | NC_031253_p83 | HTH DNA binding protein | phrog_2149 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 54628 | 55608 |
| YP_009303206.1 | NC_031253_p58 | hypothetical protein | singleton | unknown function | unknown function | 1 | 43122 | 43274 |
| YP_009303252.1 | NC_031253_p104 | hypothetical protein | singleton | unknown function | unknown function | 1 | 64332 | 64925 |
| YP_009303275.1 | NC_031253_p127 | hypothetical protein | singleton | unknown function | unknown function | 1 | 73803 | 73994 |
| YP_009303214.1 | NC_031253_p66 | hypothetical protein | phrog_8743 | unknown function | unknown function | 1 | 47836 | 48081 |
| YP_009303198.1 | NC_031253_p50 | immunity repressor | phrog_2328 | transcriptional repressor | transcription regulation | -1 | 39576 | 39965 |
| YP_009303182.1 | NC_031253_p34 | lysin A peptidase domain | singleton | unknown function | unknown function | 1 | 29566 | 30009 |
| YP_009303193.1 | NC_031253_p45 | hypothetical protein | singleton | unknown function | unknown function | 1 | 35667 | 35939 |
| YP_009303224.1 | NC_031253_p76 | hypothetical protein | phrog_12222 | unknown function | unknown function | 1 | 50989 | 51531 |
| YP_009303178.1 | NC_031253_p30 | hypothetical protein | phrog_240 | head protein | head and packaging | 1 | 27679 | 28077 |
| YP_009303176.1 | NC_031253_p28 | Minor tail protein | phrog_416 | minor tail protein | tail | 1 | 26155 | 27216 |
| YP_009303269.1 | NC_031253_p121 | hypothetical protein | phrog_10520 | unknown function | unknown function | 1 | 72041 | 72268 |
| YP_009303276.1 | NC_031253_p128 | hypothetical protein | singleton | unknown function | unknown function | 1 | 73982 | 74572 |
| YP_009303199.1 | NC_031253_p51 | excise | phrog_7506 | recombination directionality factor | integration and excision | 1 | 40190 | 40414 |
| YP_009303207.1 | NC_031253_p59 | hypothetical protein | singleton | unknown function | unknown function | 1 | 43271 | 43468 |
| YP_009303219.1 | NC_031253_p71 | hypothetical protein | singleton | unknown function | unknown function | 1 | 49405 | 49824 |
| YP_009303239.1 | NC_031253_p91 | hypothetical protein | singleton | unknown function | unknown function | 1 | 58688 | 58915 |
| YP_009303169.1 | NC_031253_p21 | tail assembly chaperone | singleton | unknown function | unknown function | 1 | 13191 | 13628 |
| YP_009303201.1 | NC_031253_p53 | DnaQ exonuclease | phrog_192 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 40859 | 41473 |
| YP_009303153.1 | NC_031253_p5 | QueD-like queosine biosynthesis protein | phrog_2389 | QueD-like 6-pyruvoyl-tetrahydropterin synthase | moron, auxiliary metabolic gene and host takeover | 1 | 2469 | 2987 |
| YP_009303258.1 | NC_031253_p110 | hypothetical protein | phrog_4095 | unknown function | unknown function | 1 | 66961 | 67743 |
| YP_009303251.1 | NC_031253_p103 | hypothetical protein | singleton | unknown function | unknown function | 1 | 63940 | 64335 |
| YP_009303155.1 | NC_031253_p7 | GTP cyclohydrolase I | phrog_2197 | GTP cyclohydrolase | other | 1 | 3694 | 4320 |
| YP_009303220.1 | NC_031253_p72 | hypothetical protein | singleton | unknown function | unknown function | 1 | 49821 | 50030 |
| YP_009303218.1 | NC_031253_p70 | hypothetical protein | singleton | unknown function | unknown function | 1 | 48953 | 49408 |
| YP_009303226.1 | NC_031253_p78 | hypothetical protein | phrog_2045 | unknown function | unknown function | 1 | 52013 | 52936 |
| YP_009303277.1 | NC_031253_p129 | hypothetical protein | singleton | unknown function | unknown function | 1 | 74639 | 74914 |
| YP_009303272.1 | NC_031253_p124 | hypothetical protein | phrog_1454 | unknown function | unknown function | 1 | 73005 | 73226 |
| YP_009303194.1 | NC_031253_p46 | hypothetical protein | singleton | unknown function | unknown function | 1 | 35936 | 36202 |
| YP_009303205.1 | NC_031253_p57 | WhiB family transcription factor | phrog_1590 | unknown function | unknown function | 1 | 42349 | 43125 |
| YP_009303238.1 | NC_031253_p90 | hypothetical protein | singleton | unknown function | unknown function | 1 | 58299 | 58685 |
| YP_009303185.1 | NC_031253_p37 | hypothetical protein | phrog_404 | minor tail protein | tail | 1 | 31449 | 31997 |
| YP_009303215.1 | NC_031253_p67 | hypothetical protein | phrog_15963 | unknown function | unknown function | 1 | 48081 | 48434 |
| YP_009303166.1 | NC_031253_p18 | head-to-tail connector protein | phrog_123 | tail terminator | connector | 1 | 12080 | 12517 |
| YP_009303184.1 | NC_031253_p36 | holin | phrog_565 | holin | lysis | 1 | 31123 | 31452 |
| YP_009303223.1 | NC_031253_p75 | hypothetical protein | singleton | unknown function | unknown function | 1 | 50681 | 50992 |
| YP_009303274.1 | NC_031253_p126 | hypothetical protein | singleton | unknown function | unknown function | 1 | 73597 | 73803 |
| YP_009303191.1 | NC_031253_p43 | hypothetical protein | singleton | unknown function | unknown function | 1 | 34583 | 35089 |
| YP_009303270.1 | NC_031253_p122 | hypothetical protein | phrog_16631 | unknown function | unknown function | 1 | 72314 | 72574 |
| YP_009303281.1 | NC_031253_p133 | hypothetical protein | singleton | unknown function | unknown function | 1 | 76352 | 76603 |
| YP_009303192.1 | NC_031253_p44 | hypothetical protein | singleton | unknown function | unknown function | 1 | 35321 | 35536 |
| YP_009303180.1 | NC_031253_p32 | lysin A glycosidase domain | phrog_181 | endolysin | lysis | 1 | 28349 | 29002 |
| YP_009303171.1 | NC_031253_p23 | Minor tail protein | phrog_106 | minor tail protein | tail | 1 | 18745 | 19743 |
| YP_009303151.1 | NC_031253_p3 | queuine tRNA-ribosyltransferase | phrog_887 | queuine tRNA-ribosyltransferase | moron, auxiliary metabolic gene and host takeover | 1 | 977 | 2050 |
| YP_009303208.1 | NC_031253_p60 | hypothetical protein | singleton | unknown function | unknown function | 1 | 43465 | 43635 |
| YP_009303197.1 | NC_031253_p49 | integrase | phrog_216 | integrase | integration and excision | -1 | 38347 | 39303 |
| YP_009303240.1 | NC_031253_p92 | hypothetical protein | phrog_15197 | unknown function | unknown function | 1 | 58912 | 59781 |
| YP_009303167.1 | NC_031253_p19 | major tail subunit | phrog_117 | major tail protein | tail | 1 | 12607 | 13194 |
| YP_009303150.1 | NC_031253_p2 | hypothetical protein | singleton | unknown function | unknown function | 1 | 858 | 980 |
| YP_009303249.1 | NC_031253_p101 | hypothetical protein | singleton | unknown function | unknown function | 1 | 62988 | 63407 |
| YP_009303161.1 | NC_031253_p13 | major capsid protein | phrog_2263 | major head protein | head and packaging | 1 | 9078 | 10457 |
| YP_009303158.1 | NC_031253_p10 | hypothetical protein | phrog_502 | membrane protein | moron, auxiliary metabolic gene and host takeover | 1 | 6339 | 6527 |
| YP_009303212.1 | NC_031253_p64 | RecT ssDNA binding protein | phrog_4171 | RecT-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 45903 | 47054 |
| YP_009303175.1 | NC_031253_p27 | Minor tail protein | phrog_746 | minor tail protein | tail | 1 | 23567 | 26155 |
| YP_009303247.1 | NC_031253_p99 | hypothetical protein | singleton | unknown function | unknown function | 1 | 62378 | 62647 |
| YP_009303243.1 | NC_031253_p95 | hypothetical protein | phrog_1568 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 60606 | 61649 |
| YP_009303173.1 | NC_031253_p25 | Minor tail protein | phrog_1697 | minor tail protein | tail | 1 | 21590 | 22132 |
| YP_009303233.1 | NC_031253_p85 | hypothetical protein | singleton | unknown function | unknown function | 1 | 56147 | 56536 |
| YP_009303257.1 | NC_031253_p109 | hypothetical protein | singleton | unknown function | unknown function | 1 | 66745 | 66912 |
| YP_009303271.1 | NC_031253_p123 | hypothetical protein | singleton | unknown function | unknown function | 1 | 72619 | 73077 |
| YP_009303260.1 | NC_031253_p112 | hypothetical protein | singleton | unknown function | unknown function | 1 | 68447 | 68824 |
| YP_009303189.1 | NC_031253_p41 | ribonuclease toxin | singleton | unknown function | unknown function | 1 | 33066 | 33305 |
| YP_009303280.1 | NC_031253_p132 | hypothetical protein | singleton | unknown function | unknown function | 1 | 75479 | 76348 |
| YP_009303160.1 | NC_031253_p12 | capsid maturation protease | phrog_80 | head maturation protease | head and packaging | 1 | 7870 | 8895 |
| YP_009303209.1 | NC_031253_p61 | HNH endonuclease | phrog_740 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 43632 | 43982 |
| YP_009303263.1 | NC_031253_p115 | hypothetical protein | singleton | unknown function | unknown function | 1 | 69662 | 70117 |
| YP_009303264.1 | NC_031253_p116 | hypothetical protein | singleton | unknown function | unknown function | 1 | 70114 | 70455 |
| YP_009303217.1 | NC_031253_p69 | hypothetical protein | singleton | unknown function | unknown function | 1 | 48640 | 48939 |
| YP_009303162.1 | NC_031253_p14 | head-to-tail connector protein | singleton | unknown function | unknown function | 1 | 10526 | 10927 |
| YP_009303187.1 | NC_031253_p39 | HTH DNA binding protein | phrog_686 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 32362 | 32613 |
| YP_009303245.1 | NC_031253_p97 | hypothetical protein | singleton | unknown function | unknown function | 1 | 61963 | 62160 |
| YP_009303164.1 | NC_031253_p16 | head-to-tail connector protein | phrog_763 | head-tail adaptor | connector | 1 | 11461 | 11835 |
| YP_009303229.1 | NC_031253_p81 | HNH endonuclease | phrog_144 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 53819 | 54274 |
| YP_009303203.1 | NC_031253_p55 | hypothetical protein | singleton | unknown function | unknown function | 1 | 41829 | 42065 |
| YP_009303177.1 | NC_031253_p29 | hypothetical protein | singleton | unknown function | unknown function | 1 | 27229 | 27660 |
| YP_009303156.1 | NC_031253_p8 | RNaseE | phrog_645 | Rnase E | DNA, RNA and nucleotide metabolism | 1 | 4317 | 4760 |
| YP_009303202.1 | NC_031253_p54 | hypothetical protein | singleton | unknown function | unknown function | 1 | 41473 | 41832 |
| YP_009303163.1 | NC_031253_p15 | head-to-tail connector protein | phrog_442 | head-tail adaptor | connector | 1 | 10931 | 11461 |
| YP_009303195.1 | NC_031253_p47 | antitoxin | phrog_664 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 36333 | 36854 |
| YP_009303190.1 | NC_031253_p42 | hypothetical protein | singleton | unknown function | unknown function | 1 | 33472 | 34419 |
| YP_009303213.1 | NC_031253_p65 | hypothetical protein | phrog_25539 | unknown function | unknown function | 1 | 47051 | 47836 |
| YP_009303149.1 | NC_031253_p1 | DNA binding protein | phrog_723 | ParB-like partition protein | DNA, RNA and nucleotide metabolism | 1 | 202 | 861 |
| YP_009303246.1 | NC_031253_p98 | hypothetical protein | phrog_1581 | unknown function | unknown function | 1 | 62157 | 62378 |
| YP_009303236.1 | NC_031253_p88 | hypothetical protein | phrog_2903 | unknown function | unknown function | 1 | 57383 | 57655 |
| YP_009303179.1 | NC_031253_p31 | hypothetical protein | phrog_1042 | unknown function | unknown function | 1 | 28074 | 28352 |
| YP_009303227.1 | NC_031253_p79 | ACSH domain containing protein | phrog_3193 | unknown function | unknown function | 1 | 52933 | 53394 |
| YP_009303244.1 | NC_031253_p96 | hypothetical protein | phrog_2021 | unknown function | unknown function | 1 | 61646 | 61966 |
| YP_009303267.1 | NC_031253_p119 | hypothetical protein | singleton | unknown function | unknown function | 1 | 71417 | 71773 |
| YP_009303266.1 | NC_031253_p118 | hypothetical protein | phrog_658 | unknown function | unknown function | 1 | 70930 | 71304 |
| YP_009303159.1 | NC_031253_p11 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 6524 | 7870 |
| YP_009303241.1 | NC_031253_p93 | hypothetical protein | singleton | unknown function | unknown function | 1 | 59778 | 60242 |
| YP_009303170.1 | NC_031253_p22 | tapemeasure | phrog_10780 | tail length tape measure protein | tail | 1 | 14060 | 18745 |
| YP_009303255.1 | NC_031253_p107 | hypothetical protein | singleton | unknown function | unknown function | 1 | 65433 | 66482 |
| YP_009303253.1 | NC_031253_p105 | hypothetical protein | phrog_1969 | unknown function | unknown function | 1 | 64925 | 65332 |
| YP_009303196.1 | NC_031253_p48 | hypothetical protein | phrog_1362 | unknown function | unknown function | 1 | 37023 | 38222 |
| YP_009303278.1 | NC_031253_p130 | AAA-ATPase | phrog_3167 | unknown function | unknown function | 1 | 74914 | 75294 |
| YP_009303152.1 | NC_031253_p4 | hypothetical protein | singleton | unknown function | unknown function | 1 | 2047 | 2472 |
| YP_009303225.1 | NC_031253_p77 | hypothetical protein | phrog_3230 | unknown function | unknown function | 1 | 51528 | 52016 |
| YP_009303237.1 | NC_031253_p89 | Metallophosphoesterase | phrog_547 | phosphoesterase | other | 1 | 57652 | 58302 |
| YP_009303234.1 | NC_031253_p86 | hypothetical protein | singleton | unknown function | unknown function | 1 | 56533 | 56817 |
| YP_009303254.1 | NC_031253_p106 | hypothetical protein | singleton | unknown function | unknown function | 1 | 65329 | 65436 |
| YP_009303235.1 | NC_031253_p87 | RuvC-like resolvase | phrog_159 | RuvC-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 56814 | 57383 |
| YP_009303210.1 | NC_031253_p62 | HTH DNA binding protein | phrog_5931 | unknown function | unknown function | 1 | 44027 | 44980 |
| YP_009303283.1 | NC_031253_p135 | HNH endonuclease | phrog_338 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 77103 | 77429 |
| YP_009303268.1 | NC_031253_p120 | hypothetical protein | phrog_2974 | unknown function | unknown function | 1 | 71808 | 72044 |
| YP_009303204.1 | NC_031253_p56 | hypothetical protein | phrog_15181 | unknown function | unknown function | 1 | 42062 | 42352 |
| YP_009303259.1 | NC_031253_p111 | hypothetical protein | phrog_8241 | unknown function | unknown function | 1 | 67816 | 68256 |
| YP_009303261.1 | NC_031253_p113 | hypothetical protein | singleton | unknown function | unknown function | 1 | 68839 | 69243 |
| YP_009303174.1 | NC_031253_p26 | Minor tail protein | phrog_1565 | minor tail protein | tail | 1 | 22137 | 23567 |
| YP_009303273.1 | NC_031253_p125 | hypothetical protein | singleton | unknown function | unknown function | 1 | 73223 | 73600 |
| YP_009303248.1 | NC_031253_p100 | hypothetical protein | singleton | unknown function | unknown function | 1 | 62644 | 62991 |