| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_031255 |
Definition |
Gordonia phage Schwabeltier, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Schnabeltiervirus; Gordonia virus Schnabeltier. |
DB of origin |
REFSEQ |
Length |
46895 |
Host Name |
Gordonia terrae |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
71 |
%GC |
67.03 |
Number of singletons |
14 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009303414.1 | NC_031255_p31 | hypothetical protein | phrog_22254 | unknown function | unknown function | -1 | 27802 | 27945 |
| YP_009303454.1 | NC_031255_p71 | HNH endonuclease | phrog_1808 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 46465 | 46803 |
| YP_009303401.1 | NC_031255_p18 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 16103 | 16966 |
| YP_009303433.1 | NC_031255_p50 | hypothetical protein | singleton | unknown function | unknown function | 1 | 35571 | 35759 |
| YP_009303386.1 | NC_031255_p3 | portal protein | phrog_113 | portal protein | head and packaging | 1 | 2188 | 3597 |
| YP_009303436.1 | NC_031255_p53 | hypothetical protein | singleton | unknown function | unknown function | 1 | 36587 | 36775 |
| YP_009303423.1 | NC_031255_p40 | immunity repressor | phrog_2328 | transcriptional repressor | transcription regulation | -1 | 32092 | 32529 |
| YP_009303429.1 | NC_031255_p46 | hypothetical protein | phrog_18626 | unknown function | unknown function | 1 | 34202 | 34501 |
| YP_009303390.1 | NC_031255_p7 | head-to-tail connector protein | phrog_2322 | head-tail connector protein | connector | 1 | 6339 | 6827 |
| YP_009303446.1 | NC_031255_p63 | hypothetical protein | singleton | unknown function | unknown function | 1 | 42094 | 42252 |
| YP_009303421.1 | NC_031255_p38 | integrase | phrog_1 | integrase | integration and excision | -1 | 30718 | 31608 |
| YP_009303416.1 | NC_031255_p33 | hypothetical protein | singleton | unknown function | unknown function | -1 | 28437 | 28925 |
| YP_009303415.1 | NC_031255_p32 | hypothetical protein | singleton | unknown function | unknown function | 1 | 28087 | 28569 |
| YP_009303385.1 | NC_031255_p2 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 521 | 2170 |
| YP_009303408.1 | NC_031255_p25 | membrane protein | phrog_3798 | unknown function | unknown function | 1 | 21381 | 21758 |
| YP_009303388.1 | NC_031255_p5 | hypothetical protein | phrog_673 | head scaffolding protein | head and packaging | 1 | 5040 | 5414 |
| YP_009303413.1 | NC_031255_p30 | hypothetical protein | singleton | unknown function | unknown function | -1 | 26561 | 27733 |
| YP_009303412.1 | NC_031255_p29 | hypothetical protein | phrog_17388 | minor tail protein | tail | 1 | 24627 | 26651 |
| YP_009303404.1 | NC_031255_p21 | lysin A | phrog_2998 | endolysin | lysis | 1 | 19238 | 20347 |
| YP_009303411.1 | NC_031255_p28 | minor tail protein | phrog_8055 | unknown function | unknown function | 1 | 24294 | 24623 |
| YP_009303384.1 | NC_031255_p1 | terminase small subunit | phrog_1496 | terminase small subunit | head and packaging | 1 | 167 | 517 |
| YP_009303434.1 | NC_031255_p51 | hypothetical protein | phrog_24063 | unknown function | unknown function | 1 | 35759 | 36136 |
| YP_009303405.1 | NC_031255_p22 | membrane protein | phrog_443 | holin | lysis | 1 | 20375 | 20860 |
| YP_009303428.1 | NC_031255_p45 | hypothetical protein | phrog_8218 | unknown function | unknown function | 1 | 34053 | 34205 |
| YP_009303439.1 | NC_031255_p56 | hypothetical protein | singleton | unknown function | unknown function | 1 | 38435 | 38821 |
| YP_009303420.1 | NC_031255_p37 | hypothetical protein | phrog_19157 | unknown function | unknown function | 1 | 30216 | 30710 |
| YP_009303431.1 | NC_031255_p48 | hypothetical protein | phrog_20407 | unknown function | unknown function | 1 | 34802 | 35221 |
| YP_009303430.1 | NC_031255_p47 | hypothetical protein | phrog_15317 | unknown function | unknown function | 1 | 34498 | 34809 |
| YP_009303389.1 | NC_031255_p6 | major capsid protein | phrog_1650 | major head protein | head and packaging | 1 | 5428 | 6339 |
| YP_009303451.1 | NC_031255_p68 | hypothetical protein | phrog_16713 | unknown function | unknown function | 1 | 44620 | 45414 |
| YP_009303406.1 | NC_031255_p23 | membrane protein | phrog_4511 | unknown function | unknown function | 1 | 20857 | 21159 |
| YP_009303394.1 | NC_031255_p11 | head-to-tail connector protein | phrog_6485 | tail terminator | connector | 1 | 7835 | 8233 |
| YP_009303427.1 | NC_031255_p44 | hypothetical protein | singleton | unknown function | unknown function | 1 | 33733 | 33987 |
| YP_009303417.1 | NC_031255_p34 | hypothetical protein | phrog_22338 | unknown function | unknown function | -1 | 29056 | 29670 |
| YP_009303441.1 | NC_031255_p58 | hypothetical protein | phrog_20160 | unknown function | unknown function | 1 | 39855 | 40178 |
| YP_009303387.1 | NC_031255_p4 | hypothetical protein | phrog_3894 | head maturation protease | head and packaging | 1 | 3594 | 5036 |
| YP_009303399.1 | NC_031255_p16 | hypothetical protein | phrog_25082 | unknown function | unknown function | 1 | 10452 | 10886 |
| YP_009303395.1 | NC_031255_p12 | major tail protein | phrog_10909 | major tail protein | tail | 1 | 8326 | 9168 |
| YP_009303426.1 | NC_031255_p43 | hypothetical protein | phrog_35824 | unknown function | unknown function | 1 | 33377 | 33736 |
| YP_009303445.1 | NC_031255_p62 | exonuclease | phrog_192 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 41372 | 42097 |
| YP_009303392.1 | NC_031255_p9 | head-to-tail connector protein | phrog_501 | head closure Hc1 | connector | 1 | 7206 | 7541 |
| YP_009303407.1 | NC_031255_p24 | hypothetical protein | phrog_17044 | unknown function | unknown function | 1 | 21159 | 21371 |
| YP_009303397.1 | NC_031255_p14 | tail assembly chaperone | phrog_5813 | tail assembly chaperone | tail | 1 | 9598 | 10436 |
| YP_009303425.1 | NC_031255_p42 | hypothetical protein | singleton | unknown function | unknown function | 1 | 32805 | 33380 |
| YP_009303402.1 | NC_031255_p19 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 16963 | 18693 |
| YP_009303440.1 | NC_031255_p57 | DNA translocase | phrog_12598 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 38818 | 39858 |
| YP_009303410.1 | NC_031255_p27 | minor tail protein | phrog_737 | minor tail protein | tail | 1 | 22465 | 24297 |
| YP_009303453.1 | NC_031255_p70 | HTH DNA-binding protein | phrog_2474 | MerR-like transcriptional regulator | transcription regulation | 1 | 46220 | 46468 |
| YP_009303400.1 | NC_031255_p17 | tape measure protein | phrog_4197 | tail length tape measure protein | tail | 1 | 10933 | 16047 |
| YP_009303447.1 | NC_031255_p64 | hypothetical protein | singleton | unknown function | unknown function | 1 | 42227 | 42502 |
| YP_009303448.1 | NC_031255_p65 | HNH endonuclease | phrog_15463 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 42563 | 43924 |
| YP_009303442.1 | NC_031255_p59 | hypothetical protein | singleton | unknown function | unknown function | 1 | 40175 | 40549 |
| YP_009303393.1 | NC_031255_p10 | head-to-tail connector protein | phrog_8079 | neck protein | connector | 1 | 7548 | 7838 |
| YP_009303437.1 | NC_031255_p54 | DNA-binding protein | phrog_6218 | ParB-like partition protein | DNA, RNA and nucleotide metabolism | 1 | 36779 | 38296 |
| YP_009303450.1 | NC_031255_p67 | hypothetical protein | singleton | unknown function | unknown function | 1 | 44316 | 44633 |
| YP_009303444.1 | NC_031255_p61 | hypothetical protein | phrog_16850 | unknown function | unknown function | 1 | 41019 | 41375 |
| YP_009303409.1 | NC_031255_p26 | lysin B | phrog_102 | endolysin | lysis | 1 | 21755 | 22468 |
| YP_009303443.1 | NC_031255_p60 | hypothetical protein | phrog_31259 | unknown function | unknown function | 1 | 40546 | 41022 |
| YP_009303438.1 | NC_031255_p55 | hypothetical protein | phrog_33323 | unknown function | unknown function | 1 | 38299 | 38445 |
| YP_009303419.1 | NC_031255_p36 | hypothetical protein | singleton | unknown function | unknown function | -1 | 30063 | 30194 |
| YP_009303435.1 | NC_031255_p52 | hypothetical protein | phrog_478 | site-specific recombination directionality factor RDF | integration and excision | 1 | 36133 | 36540 |
| YP_009303432.1 | NC_031255_p49 | hypothetical protein | phrog_20805 | unknown function | unknown function | 1 | 35214 | 35543 |
| YP_009303452.1 | NC_031255_p69 | hypothetical protein | phrog_1467 | unknown function | unknown function | 1 | 45411 | 46112 |
| YP_009303418.1 | NC_031255_p35 | hypothetical protein | phrog_26576 | unknown function | unknown function | -1 | 29685 | 29993 |
| YP_009303396.1 | NC_031255_p13 | hypothetical protein | phrog_18254 | unknown function | unknown function | 1 | 9196 | 9573 |
| YP_009303398.1 | NC_031255_p15 | tail assembly chaperone | phrog_17338 | tail assembly chaperone | tail | 1 | 9598 | 10026 |
| YP_009303422.1 | NC_031255_p39 | hypothetical protein | singleton | unknown function | unknown function | -1 | 31784 | 32095 |
| YP_009303449.1 | NC_031255_p66 | hypothetical protein | phrog_35289 | unknown function | unknown function | 1 | 43921 | 44229 |
| YP_009303424.1 | NC_031255_p41 | HTH DNA-binding protein | phrog_66 | excisionase and transcriptional regulator | integration and excision | 1 | 32611 | 32805 |
| YP_009303391.1 | NC_031255_p8 | head-to-tail connector protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 6824 | 7219 |
| YP_009303403.1 | NC_031255_p20 | hypothetical protein | phrog_22223 | unknown function | unknown function | 1 | 18705 | 19151 |