| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_031256 |
Definition |
Mycobacterium phage Loser, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus; unclassified Fromanvirus. |
DB of origin |
REFSEQ |
Length |
53486 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
97 |
%GC |
64.46 |
Number of singletons |
1 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009303546.1 | NC_031256_p92 | hypothetical protein | phrog_1946 | unknown function | unknown function | -1 | 50394 | 50594 |
| YP_009303475.1 | NC_031256_p21 | head to tail connector protein | phrog_830 | head-tail connector protein | connector | 1 | 15523 | 15723 |
| YP_009303474.1 | NC_031256_p20 | head to tail connector protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 15149 | 15526 |
| YP_009303519.1 | NC_031256_p65 | hypothetical protein | phrog_13419 | unknown function | unknown function | -1 | 41326 | 41478 |
| YP_009303540.1 | NC_031256_p86 | hypothetical protein | phrog_421 | unknown function | unknown function | -1 | 48361 | 49116 |
| YP_009303525.1 | NC_031256_p71 | hypothetical protein | phrog_520 | unknown function | unknown function | -1 | 43275 | 43514 |
| YP_009303518.1 | NC_031256_p64 | esterase | phrog_789 | esterase/lipase | other | -1 | 40493 | 41338 |
| YP_009303469.1 | NC_031256_p15 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 10998 | 12458 |
| YP_009303494.1 | NC_031256_p40 | hypothetical protein | phrog_383 | unknown function | unknown function | -1 | 29021 | 29449 |
| YP_009303479.1 | NC_031256_p25 | major tail protein | phrog_117 | major tail protein | tail | 1 | 16879 | 17472 |
| YP_009303478.1 | NC_031256_p24 | head to tail connector protein | phrog_123 | tail terminator | connector | 1 | 16435 | 16860 |
| YP_009303464.1 | NC_031256_p10 | hypothetical protein | phrog_1087 | unknown function | unknown function | 1 | 6267 | 6404 |
| YP_009303456.1 | NC_031256_p2 | VIP2-like toxin | phrog_3895 | ADP-ribosyltransferase exoenzyme toxin | moron, auxiliary metabolic gene and host takeover | 1 | 1040 | 1978 |
| YP_009303545.1 | NC_031256_p91 | hypothetical protein | phrog_519 | unknown function | unknown function | -1 | 50230 | 50397 |
| YP_009303544.1 | NC_031256_p90 | hypothetical protein | phrog_586 | unknown function | unknown function | -1 | 49880 | 50233 |
| YP_009303488.1 | NC_031256_p34 | minor tail protein | phrog_737 | minor tail protein | tail | 1 | 25033 | 26811 |
| YP_009303543.1 | NC_031256_p89 | hypothetical protein | phrog_10286 | unknown function | unknown function | -1 | 49542 | 49859 |
| YP_009303480.1 | NC_031256_p26 | tail assembly chaperone | phrog_393 | tail assembly chaperone | tail | 1 | 17580 | 18409 |
| YP_009303461.1 | NC_031256_p7 | hypothetical protein | phrog_819 | tail protein | tail | 1 | 4131 | 5249 |
| YP_009303496.1 | NC_031256_p42 | hypothetical protein | phrog_3283 | unknown function | unknown function | -1 | 29717 | 29947 |
| YP_009303467.1 | NC_031256_p13 | lysin B | phrog_102 | endolysin | lysis | 1 | 8241 | 9218 |
| YP_009303468.1 | NC_031256_p14 | terminase | phrog_9 | terminase large subunit | head and packaging | 1 | 9241 | 11001 |
| YP_009303542.1 | NC_031256_p88 | hypothetical protein | phrog_828 | unknown function | unknown function | -1 | 49256 | 49477 |
| YP_009303551.1 | NC_031256_p97 | hypothetical protein | phrog_1676 | unknown function | unknown function | -1 | 51985 | 52299 |
| YP_009303503.1 | NC_031256_p49 | hypothetical protein | phrog_690 | unknown function | unknown function | -1 | 33092 | 33295 |
| YP_009303463.1 | NC_031256_p9 | hypothetical protein | phrog_2269 | unknown function | unknown function | 1 | 5909 | 6124 |
| YP_009303532.1 | NC_031256_p78 | hypothetical protein | phrog_4294 | unknown function | unknown function | -1 | 46507 | 46665 |
| YP_009303500.1 | NC_031256_p46 | hypothetical protein | phrog_18089 | unknown function | unknown function | -1 | 32264 | 32467 |
| YP_009303458.1 | NC_031256_p4 | HNH endonuclease | phrog_333 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 2277 | 2573 |
| YP_009303536.1 | NC_031256_p82 | hypothetical protein | phrog_1178 | unknown function | unknown function | -1 | 47237 | 47509 |
| YP_009303510.1 | NC_031256_p56 | hypothetical protein | phrog_2436 | unknown function | unknown function | -1 | 37762 | 37914 |
| YP_009303489.1 | NC_031256_p35 | hypothetical protein | phrog_2570 | unknown function | unknown function | 1 | 26885 | 27073 |
| YP_009303507.1 | NC_031256_p53 | hypothetical protein | phrog_2046 | unknown function | unknown function | -1 | 36712 | 36918 |
| YP_009303548.1 | NC_031256_p94 | hypothetical protein | phrog_6255 | unknown function | unknown function | -1 | 50884 | 51132 |
| YP_009303505.1 | NC_031256_p51 | hypothetical protein | phrog_364 | ribonucleoside reductase class II | DNA, RNA and nucleotide metabolism | -1 | 34110 | 34655 |
| YP_009303490.1 | NC_031256_p36 | dsDNA partitioning protein | phrog_164 | ParA-like partition protein | DNA, RNA and nucleotide metabolism | 1 | 27695 | 28273 |
| YP_009303482.1 | NC_031256_p28 | tape measure protein | phrog_305 | tail length tape measure protein | tail | 1 | 18399 | 20897 |
| YP_009303471.1 | NC_031256_p17 | scaffolding protein | phrog_233 | head scaffolding protein | head and packaging | 1 | 13393 | 13905 |
| YP_009303529.1 | NC_031256_p75 | hypothetical protein | phrog_1562 | unknown function | unknown function | -1 | 44947 | 45354 |
| YP_009303514.1 | NC_031256_p60 | DNA primase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 39080 | 39619 |
| YP_009303509.1 | NC_031256_p55 | hypothetical protein | phrog_354 | sigma-K factor | transcription regulation | -1 | 37091 | 37765 |
| YP_009303527.1 | NC_031256_p73 | hypothetical protein | phrog_642 | unknown function | unknown function | -1 | 43734 | 43958 |
| YP_009303487.1 | NC_031256_p33 | hypothetical protein | phrog_726 | unknown function | unknown function | 1 | 24594 | 25022 |
| YP_009303460.1 | NC_031256_p6 | hypothetical protein | phrog_1260 | minor tail protein | tail | 1 | 3169 | 4131 |
| YP_009303521.1 | NC_031256_p67 | hypothetical protein | phrog_397 | unknown function | unknown function | -1 | 41732 | 41965 |
| YP_009303485.1 | NC_031256_p31 | minor tail protein | phrog_352 | minor tail protein | tail | 1 | 23730 | 24179 |
| YP_009303498.1 | NC_031256_p44 | hypothetical protein | phrog_896 | unknown function | unknown function | -1 | 30219 | 30461 |
| YP_009303455.1 | NC_031256_p1 | hypothetical protein | phrog_940 | nuclease | DNA, RNA and nucleotide metabolism | 1 | 369 | 1133 |
| YP_009303506.1 | NC_031256_p52 | ribonucleotide reductase | phrog_367 | ribonucleotide reductase | DNA, RNA and nucleotide metabolism | -1 | 34652 | 36715 |
| YP_009303465.1 | NC_031256_p11 | lysin A | phrog_317 | endolysin | lysis | 1 | 6404 | 7858 |
| YP_009303492.1 | NC_031256_p38 | hypothetical protein | phrog_4193 | unknown function | unknown function | -1 | 28729 | 28866 |
| YP_009303550.1 | NC_031256_p96 | hypothetical protein | phrog_1445 | unknown function | unknown function | -1 | 51877 | 51981 |
| YP_009303526.1 | NC_031256_p72 | hypothetical protein | phrog_666 | unknown function | unknown function | -1 | 43543 | 43737 |
| YP_009303477.1 | NC_031256_p23 | head to tail connector protein | phrog_321 | tail completion or Neck1 protein | connector | 1 | 16091 | 16426 |
| YP_009303457.1 | NC_031256_p3 | hypothetical protein | phrog_4491 | unknown function | unknown function | 1 | 1975 | 2280 |
| YP_009303541.1 | NC_031256_p87 | hypothetical protein | phrog_855 | unknown function | unknown function | -1 | 49116 | 49259 |
| YP_009303499.1 | NC_031256_p45 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 30469 | 32256 |
| YP_009303520.1 | NC_031256_p66 | hypothetical protein | phrog_1123 | unknown function | unknown function | -1 | 41478 | 41735 |
| YP_009303491.1 | NC_031256_p37 | dsDNA partitioning protein | phrog_2639 | Arc-like repressor | transcription regulation | 1 | 28266 | 28538 |
| YP_009303549.1 | NC_031256_p95 | hypothetical protein | phrog_1392 | unknown function | unknown function | -1 | 51141 | 51875 |
| YP_009303524.1 | NC_031256_p70 | hypothetical protein | phrog_2731 | unknown function | unknown function | -1 | 43141 | 43278 |
| YP_009303528.1 | NC_031256_p74 | exonuclease | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 44042 | 44950 |
| YP_009303497.1 | NC_031256_p43 | hypothetical protein | phrog_3771 | unknown function | unknown function | -1 | 29929 | 30219 |
| YP_009303533.1 | NC_031256_p79 | hypothetical protein | phrog_4569 | unknown function | unknown function | -1 | 46665 | 46940 |
| YP_009303531.1 | NC_031256_p77 | hypothetical protein | phrog_1173 | unknown function | unknown function | -1 | 46212 | 46367 |
| YP_009303484.1 | NC_031256_p30 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 21942 | 23714 |
| YP_009303515.1 | NC_031256_p61 | DNA primase | phrog_360 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 39540 | 39935 |
| YP_009303495.1 | NC_031256_p41 | hypothetical protein | phrog_2099 | unknown function | unknown function | -1 | 29427 | 29693 |
| YP_009303466.1 | NC_031256_p12 | holin | phrog_526 | holin | lysis | 1 | 7855 | 8244 |
| YP_009303522.1 | NC_031256_p68 | hypothetical protein | phrog_542 | unknown function | unknown function | -1 | 42117 | 42302 |
| YP_009303472.1 | NC_031256_p18 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 13935 | 14891 |
| YP_009303459.1 | NC_031256_p5 | hypothetical protein | phrog_226 | minor tail protein | tail | 1 | 2612 | 3082 |
| YP_009303504.1 | NC_031256_p50 | thymidylate synthase | phrog_85 | thymidylate synthase | DNA, RNA and nucleotide metabolism | -1 | 33299 | 34033 |
| YP_009303493.1 | NC_031256_p39 | hypothetical protein | phrog_542 | unknown function | unknown function | -1 | 28866 | 29024 |
| YP_009303530.1 | NC_031256_p76 | immunity repressor | phrog_357 | transcriptional repressor | transcription regulation | -1 | 45399 | 45980 |
| YP_009303513.1 | NC_031256_p59 | hypothetical protein | phrog_2264 | unknown function | unknown function | -1 | 39001 | 39078 |
| YP_009303534.1 | NC_031256_p80 | hypothetical protein | phrog_23979 | unknown function | unknown function | -1 | 46942 | 47094 |
| YP_009303501.1 | NC_031256_p47 | hypothetical protein | phrog_23873 | unknown function | unknown function | -1 | 32464 | 32673 |
| YP_009303486.1 | NC_031256_p32 | hypothetical protein | phrog_1298 | minor tail protein | tail | 1 | 24176 | 24604 |
| YP_009303538.1 | NC_031256_p84 | hypothetical protein | phrog_1477 | unknown function | unknown function | -1 | 47931 | 48065 |
| YP_009303539.1 | NC_031256_p85 | hypothetical protein | phrog_439 | site-specific recombination directionality factor RDF | integration and excision | -1 | 48065 | 48364 |
| YP_009303470.1 | NC_031256_p16 | capsid maturation protease | phrog_193 | head maturation protease | head and packaging | 1 | 12578 | 13339 |
| YP_009303535.1 | NC_031256_p81 | hypothetical protein | phrog_8490 | unknown function | unknown function | -1 | 47094 | 47240 |
| YP_009303502.1 | NC_031256_p48 | HTH DNA binding protein | phrog_517 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 32673 | 33095 |
| YP_009303476.1 | NC_031256_p22 | head to tail connector protein | phrog_320 | head closure Hc1 | connector | 1 | 15723 | 16091 |
| YP_009303481.1 | NC_031256_p27 | tail assembly chaperone | phrog_330 | tail assembly chaperone | tail | 1 | 17580 | 17984 |
| YP_009303537.1 | NC_031256_p83 | hypothetical protein | singleton | unknown function | unknown function | -1 | 47506 | 47934 |
| YP_009303511.1 | NC_031256_p57 | recombination directionality factor | phrog_221 | metallo-phosphoesterase | other | -1 | 37917 | 38687 |
| YP_009303483.1 | NC_031256_p29 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 20932 | 21945 |
| YP_009303523.1 | NC_031256_p69 | dsDNA helicase | phrog_243 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | -1 | 42328 | 43131 |
| YP_009303547.1 | NC_031256_p93 | hypothetical protein | phrog_8476 | unknown function | unknown function | -1 | 50594 | 50884 |
| YP_009303473.1 | NC_031256_p19 | head to tail connector protein | phrog_748 | head-tail connector protein | connector | 1 | 14963 | 15145 |
| YP_009303516.1 | NC_031256_p62 | endonuclease VII | phrog_307 | endonuclease VII | DNA, RNA and nucleotide metabolism | -1 | 39932 | 40393 |
| YP_009303512.1 | NC_031256_p58 | hypothetical protein | phrog_474 | phosphofructokinase | other | -1 | 38684 | 39004 |
| YP_009303462.1 | NC_031256_p8 | hypothetical protein | phrog_356 | minor tail protein | tail | 1 | 5253 | 5897 |
| YP_009303517.1 | NC_031256_p63 | hypothetical protein | phrog_2187 | unknown function | unknown function | -1 | 40356 | 40496 |
| YP_009303508.1 | NC_031256_p54 | hypothetical protein | phrog_499 | unknown function | unknown function | -1 | 36915 | 37094 |