Genomic map of Mycobacterium phage Loser (NC_031256)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_031256
Definition
Mycobacterium phage Loser, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus; unclassified Fromanvirus.
DB of origin
REFSEQ
Length
53486
Host Name
Mycobacterium smegmatis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
97
%GC
64.46
Number of singletons
1
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009303546.1 NC_031256_p92 hypothetical protein phrog_1946 unknown function unknown function -1 50394 50594
YP_009303475.1 NC_031256_p21 head to tail connector protein phrog_830 head-tail connector protein connector 1 15523 15723
YP_009303474.1 NC_031256_p20 head to tail connector protein phrog_137 head-tail adaptor Ad1 connector 1 15149 15526
YP_009303519.1 NC_031256_p65 hypothetical protein phrog_13419 unknown function unknown function -1 41326 41478
YP_009303540.1 NC_031256_p86 hypothetical protein phrog_421 unknown function unknown function -1 48361 49116
YP_009303525.1 NC_031256_p71 hypothetical protein phrog_520 unknown function unknown function -1 43275 43514
YP_009303518.1 NC_031256_p64 esterase phrog_789 esterase/lipase other -1 40493 41338
YP_009303469.1 NC_031256_p15 portal protein phrog_104 portal protein head and packaging 1 10998 12458
YP_009303494.1 NC_031256_p40 hypothetical protein phrog_383 unknown function unknown function -1 29021 29449
YP_009303479.1 NC_031256_p25 major tail protein phrog_117 major tail protein tail 1 16879 17472
YP_009303478.1 NC_031256_p24 head to tail connector protein phrog_123 tail terminator connector 1 16435 16860
YP_009303464.1 NC_031256_p10 hypothetical protein phrog_1087 unknown function unknown function 1 6267 6404
YP_009303456.1 NC_031256_p2 VIP2-like toxin phrog_3895 ADP-ribosyltransferase exoenzyme toxin moron, auxiliary metabolic gene and host takeover 1 1040 1978
YP_009303545.1 NC_031256_p91 hypothetical protein phrog_519 unknown function unknown function -1 50230 50397
YP_009303544.1 NC_031256_p90 hypothetical protein phrog_586 unknown function unknown function -1 49880 50233
YP_009303488.1 NC_031256_p34 minor tail protein phrog_737 minor tail protein tail 1 25033 26811
YP_009303543.1 NC_031256_p89 hypothetical protein phrog_10286 unknown function unknown function -1 49542 49859
YP_009303480.1 NC_031256_p26 tail assembly chaperone phrog_393 tail assembly chaperone tail 1 17580 18409
YP_009303461.1 NC_031256_p7 hypothetical protein phrog_819 tail protein tail 1 4131 5249
YP_009303496.1 NC_031256_p42 hypothetical protein phrog_3283 unknown function unknown function -1 29717 29947
YP_009303467.1 NC_031256_p13 lysin B phrog_102 endolysin lysis 1 8241 9218
YP_009303468.1 NC_031256_p14 terminase phrog_9 terminase large subunit head and packaging 1 9241 11001
YP_009303542.1 NC_031256_p88 hypothetical protein phrog_828 unknown function unknown function -1 49256 49477
YP_009303551.1 NC_031256_p97 hypothetical protein phrog_1676 unknown function unknown function -1 51985 52299
YP_009303503.1 NC_031256_p49 hypothetical protein phrog_690 unknown function unknown function -1 33092 33295
YP_009303463.1 NC_031256_p9 hypothetical protein phrog_2269 unknown function unknown function 1 5909 6124
YP_009303532.1 NC_031256_p78 hypothetical protein phrog_4294 unknown function unknown function -1 46507 46665
YP_009303500.1 NC_031256_p46 hypothetical protein phrog_18089 unknown function unknown function -1 32264 32467
YP_009303458.1 NC_031256_p4 HNH endonuclease phrog_333 HNH endonuclease DNA, RNA and nucleotide metabolism 1 2277 2573
YP_009303536.1 NC_031256_p82 hypothetical protein phrog_1178 unknown function unknown function -1 47237 47509
YP_009303510.1 NC_031256_p56 hypothetical protein phrog_2436 unknown function unknown function -1 37762 37914
YP_009303489.1 NC_031256_p35 hypothetical protein phrog_2570 unknown function unknown function 1 26885 27073
YP_009303507.1 NC_031256_p53 hypothetical protein phrog_2046 unknown function unknown function -1 36712 36918
YP_009303548.1 NC_031256_p94 hypothetical protein phrog_6255 unknown function unknown function -1 50884 51132
YP_009303505.1 NC_031256_p51 hypothetical protein phrog_364 ribonucleoside reductase class II DNA, RNA and nucleotide metabolism -1 34110 34655
YP_009303490.1 NC_031256_p36 dsDNA partitioning protein phrog_164 ParA-like partition protein DNA, RNA and nucleotide metabolism 1 27695 28273
YP_009303482.1 NC_031256_p28 tape measure protein phrog_305 tail length tape measure protein tail 1 18399 20897
YP_009303471.1 NC_031256_p17 scaffolding protein phrog_233 head scaffolding protein head and packaging 1 13393 13905
YP_009303529.1 NC_031256_p75 hypothetical protein phrog_1562 unknown function unknown function -1 44947 45354
YP_009303514.1 NC_031256_p60 DNA primase phrog_47 DNA primase DNA, RNA and nucleotide metabolism -1 39080 39619
YP_009303509.1 NC_031256_p55 hypothetical protein phrog_354 sigma-K factor transcription regulation -1 37091 37765
YP_009303527.1 NC_031256_p73 hypothetical protein phrog_642 unknown function unknown function -1 43734 43958
YP_009303487.1 NC_031256_p33 hypothetical protein phrog_726 unknown function unknown function 1 24594 25022
YP_009303460.1 NC_031256_p6 hypothetical protein phrog_1260 minor tail protein tail 1 3169 4131
YP_009303521.1 NC_031256_p67 hypothetical protein phrog_397 unknown function unknown function -1 41732 41965
YP_009303485.1 NC_031256_p31 minor tail protein phrog_352 minor tail protein tail 1 23730 24179
YP_009303498.1 NC_031256_p44 hypothetical protein phrog_896 unknown function unknown function -1 30219 30461
YP_009303455.1 NC_031256_p1 hypothetical protein phrog_940 nuclease DNA, RNA and nucleotide metabolism 1 369 1133
YP_009303506.1 NC_031256_p52 ribonucleotide reductase phrog_367 ribonucleotide reductase DNA, RNA and nucleotide metabolism -1 34652 36715
YP_009303465.1 NC_031256_p11 lysin A phrog_317 endolysin lysis 1 6404 7858
YP_009303492.1 NC_031256_p38 hypothetical protein phrog_4193 unknown function unknown function -1 28729 28866
YP_009303550.1 NC_031256_p96 hypothetical protein phrog_1445 unknown function unknown function -1 51877 51981
YP_009303526.1 NC_031256_p72 hypothetical protein phrog_666 unknown function unknown function -1 43543 43737
YP_009303477.1 NC_031256_p23 head to tail connector protein phrog_321 tail completion or Neck1 protein connector 1 16091 16426
YP_009303457.1 NC_031256_p3 hypothetical protein phrog_4491 unknown function unknown function 1 1975 2280
YP_009303541.1 NC_031256_p87 hypothetical protein phrog_855 unknown function unknown function -1 49116 49259
YP_009303499.1 NC_031256_p45 DNA polymerase I phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism -1 30469 32256
YP_009303520.1 NC_031256_p66 hypothetical protein phrog_1123 unknown function unknown function -1 41478 41735
YP_009303491.1 NC_031256_p37 dsDNA partitioning protein phrog_2639 Arc-like repressor transcription regulation 1 28266 28538
YP_009303549.1 NC_031256_p95 hypothetical protein phrog_1392 unknown function unknown function -1 51141 51875
YP_009303524.1 NC_031256_p70 hypothetical protein phrog_2731 unknown function unknown function -1 43141 43278
YP_009303528.1 NC_031256_p74 exonuclease phrog_69 exonuclease DNA, RNA and nucleotide metabolism -1 44042 44950
YP_009303497.1 NC_031256_p43 hypothetical protein phrog_3771 unknown function unknown function -1 29929 30219
YP_009303533.1 NC_031256_p79 hypothetical protein phrog_4569 unknown function unknown function -1 46665 46940
YP_009303531.1 NC_031256_p77 hypothetical protein phrog_1173 unknown function unknown function -1 46212 46367
YP_009303484.1 NC_031256_p30 minor tail protein phrog_110 minor tail protein tail 1 21942 23714
YP_009303515.1 NC_031256_p61 DNA primase phrog_360 DNA primase DNA, RNA and nucleotide metabolism -1 39540 39935
YP_009303495.1 NC_031256_p41 hypothetical protein phrog_2099 unknown function unknown function -1 29427 29693
YP_009303466.1 NC_031256_p12 holin phrog_526 holin lysis 1 7855 8244
YP_009303522.1 NC_031256_p68 hypothetical protein phrog_542 unknown function unknown function -1 42117 42302
YP_009303472.1 NC_031256_p18 major capsid protein phrog_10 major head protein head and packaging 1 13935 14891
YP_009303459.1 NC_031256_p5 hypothetical protein phrog_226 minor tail protein tail 1 2612 3082
YP_009303504.1 NC_031256_p50 thymidylate synthase phrog_85 thymidylate synthase DNA, RNA and nucleotide metabolism -1 33299 34033
YP_009303493.1 NC_031256_p39 hypothetical protein phrog_542 unknown function unknown function -1 28866 29024
YP_009303530.1 NC_031256_p76 immunity repressor phrog_357 transcriptional repressor transcription regulation -1 45399 45980
YP_009303513.1 NC_031256_p59 hypothetical protein phrog_2264 unknown function unknown function -1 39001 39078
YP_009303534.1 NC_031256_p80 hypothetical protein phrog_23979 unknown function unknown function -1 46942 47094
YP_009303501.1 NC_031256_p47 hypothetical protein phrog_23873 unknown function unknown function -1 32464 32673
YP_009303486.1 NC_031256_p32 hypothetical protein phrog_1298 minor tail protein tail 1 24176 24604
YP_009303538.1 NC_031256_p84 hypothetical protein phrog_1477 unknown function unknown function -1 47931 48065
YP_009303539.1 NC_031256_p85 hypothetical protein phrog_439 site-specific recombination directionality factor RDF integration and excision -1 48065 48364
YP_009303470.1 NC_031256_p16 capsid maturation protease phrog_193 head maturation protease head and packaging 1 12578 13339
YP_009303535.1 NC_031256_p81 hypothetical protein phrog_8490 unknown function unknown function -1 47094 47240
YP_009303502.1 NC_031256_p48 HTH DNA binding protein phrog_517 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 32673 33095
YP_009303476.1 NC_031256_p22 head to tail connector protein phrog_320 head closure Hc1 connector 1 15723 16091
YP_009303481.1 NC_031256_p27 tail assembly chaperone phrog_330 tail assembly chaperone tail 1 17580 17984
YP_009303537.1 NC_031256_p83 hypothetical protein singleton unknown function unknown function -1 47506 47934
YP_009303511.1 NC_031256_p57 recombination directionality factor phrog_221 metallo-phosphoesterase other -1 37917 38687
YP_009303483.1 NC_031256_p29 minor tail protein phrog_106 minor tail protein tail 1 20932 21945
YP_009303523.1 NC_031256_p69 dsDNA helicase phrog_243 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism -1 42328 43131
YP_009303547.1 NC_031256_p93 hypothetical protein phrog_8476 unknown function unknown function -1 50594 50884
YP_009303473.1 NC_031256_p19 head to tail connector protein phrog_748 head-tail connector protein connector 1 14963 15145
YP_009303516.1 NC_031256_p62 endonuclease VII phrog_307 endonuclease VII DNA, RNA and nucleotide metabolism -1 39932 40393
YP_009303512.1 NC_031256_p58 hypothetical protein phrog_474 phosphofructokinase other -1 38684 39004
YP_009303462.1 NC_031256_p8 hypothetical protein phrog_356 minor tail protein tail 1 5253 5897
YP_009303517.1 NC_031256_p63 hypothetical protein phrog_2187 unknown function unknown function -1 40356 40496
YP_009303508.1 NC_031256_p54 hypothetical protein phrog_499 unknown function unknown function -1 36915 37094