| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_031258 |
Definition |
Salmonella phage BP12A, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Studiervirinae; Berlinvirus; Salmonella virus BP12A. |
DB of origin |
REFSEQ |
Length |
39696 |
Host Name |
Salmonella enterica |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
47 |
%GC |
48.95 |
Number of singletons |
1 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009303655.1 | NC_031258_p6 | hypothetical protein | phrog_8103 | unknown function | unknown function | 1 | 5443 | 6012 |
| YP_009303668.1 | NC_031258_p19 | hypothetical protein | phrog_1950 | unknown function | unknown function | 1 | 13005 | 13217 |
| YP_009303651.1 | NC_031258_p2 | hypothetical protein | phrog_2385 | unknown function | unknown function | 1 | 1168 | 1365 |
| YP_009303678.1 | NC_031258_p29 | hypothetical protein | phrog_1391 | unknown function | unknown function | 1 | 18543 | 18818 |
| YP_009303675.1 | NC_031258_p26 | hypothetical protein | phrog_18166 | unknown function | unknown function | 1 | 16903 | 17196 |
| YP_009303656.1 | NC_031258_p7 | hypothetical protein | phrog_2490 | unknown function | unknown function | 1 | 6101 | 6250 |
| YP_009303658.1 | NC_031258_p9 | DNA ligase | phrog_114 | ATP-dependent DNA ligase | DNA, RNA and nucleotide metabolism | 1 | 6628 | 7662 |
| YP_009303661.1 | NC_031258_p12 | bacterial RNA polymerase inhibitor | phrog_1307 | RNA polymerase inhibitor | DNA, RNA and nucleotide metabolism | 1 | 8627 | 8818 |
| YP_009303674.1 | NC_031258_p25 | hypothetical protein | phrog_1334 | unknown function | unknown function | 1 | 16697 | 16906 |
| YP_009303682.1 | NC_031258_p33 | major capsid protein | phrog_267 | major head protein | head and packaging | 1 | 21886 | 22920 |
| YP_009303679.1 | NC_031258_p30 | hypothetical protein | phrog_1320 | host range and adsorption protein | moron, auxiliary metabolic gene and host takeover | 1 | 18836 | 19159 |
| YP_009303670.1 | NC_031258_p21 | hypothetical protein | phrog_4023 | unknown function | unknown function | 1 | 13623 | 14039 |
| YP_009303662.1 | NC_031258_p13 | single-stranded DNA-binding protein | phrog_112 | Gp2.5-like ssDNA binding protein and ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 8887 | 9582 |
| YP_009303687.1 | NC_031258_p38 | DNA injection channel protein B | phrog_1339 | internal virion protein | head and packaging | 1 | 27246 | 29522 |
| YP_009303653.1 | NC_031258_p4 | protein kinase | phrog_2828 | serine-threonine kinase | other | 1 | 1527 | 2630 |
| YP_009303659.1 | NC_031258_p10 | hypothetical protein | phrog_1777 | unknown function | unknown function | 1 | 7844 | 8107 |
| YP_009303691.1 | NC_031258_p42 | DNA packaging protein A | phrog_1351 | terminase small subunit | head and packaging | 1 | 35717 | 35983 |
| YP_009303669.1 | NC_031258_p20 | hypothetical protein | phrog_2254 | unknown function | unknown function | 1 | 13231 | 13533 |
| YP_009303667.1 | NC_031258_p18 | hypothetical protein | singleton | unknown function | unknown function | 1 | 12830 | 13012 |
| YP_009303684.1 | NC_031258_p35 | tail tubular protein B | phrog_457 | tail protein | tail | 1 | 23755 | 26130 |
| YP_009303650.1 | NC_031258_p1 | S-adenosyl-L-methionine hydrolase | phrog_2226 | SAM-dependent methyltransferase | other | 1 | 669 | 1166 |
| YP_009303685.1 | NC_031258_p36 | internal virion protein A | phrog_308 | internal virion protein | head and packaging | 1 | 26210 | 26626 |
| YP_009303693.1 | NC_031258_p44 | DNA packaging protein B | phrog_38 | terminase large subunit | head and packaging | 1 | 36523 | 38280 |
| YP_009303660.1 | NC_031258_p11 | hypothetical protein | phrog_2585 | nucleotide kinase | other | 1 | 8107 | 8451 |
| YP_009303692.1 | NC_031258_p43 | endopeptidase Rz | phrog_1327 | Rz-like spanin | lysis | 1 | 36082 | 36513 |
| YP_009303681.1 | NC_031258_p32 | capsid assembly protein | phrog_1052 | head assembly | head and packaging | 1 | 20845 | 21756 |
| YP_009303652.1 | NC_031258_p3 | hypothetical protein | phrog_10380 | unknown function | unknown function | 1 | 1349 | 1513 |
| YP_009303673.1 | NC_031258_p24 | hypothetical protein | phrog_1452 | Gp5.5-like host HNS inhibition | moron, auxiliary metabolic gene and host takeover | 1 | 16404 | 16697 |
| YP_009303654.1 | NC_031258_p5 | DNA-dependent RNA polymerase | phrog_414 | RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 2704 | 5355 |
| YP_009303657.1 | NC_031258_p8 | hypothetical protein | phrog_2949 | dGTPase inhibitor; target for F exclusion | other | 1 | 6250 | 6522 |
| YP_009303696.1 | NC_031258_p47 | hypothetical protein | phrog_24929 | unknown function | unknown function | 1 | 39124 | 39414 |
| YP_009303663.1 | NC_031258_p14 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 9583 | 10002 |
| YP_009303694.1 | NC_031258_p45 | hypothetical protein | phrog_6254 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 38304 | 38750 |
| YP_009303686.1 | NC_031258_p37 | DNA injection channel protein A | phrog_805 | internal virion protein | head and packaging | 1 | 26629 | 27243 |
| YP_009303672.1 | NC_031258_p23 | hypothetical protein | phrog_18049 | unknown function | unknown function | 1 | 16166 | 16393 |
| YP_009303677.1 | NC_031258_p28 | hypothetical protein | phrog_1447 | unknown function | unknown function | 1 | 18278 | 18523 |
| YP_009303666.1 | NC_031258_p17 | DNA primase/helicase | phrog_239 | DNA primase/helicase | DNA, RNA and nucleotide metabolism | 1 | 11164 | 12876 |
| YP_009303664.1 | NC_031258_p15 | endonuclease | phrog_945 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 9983 | 10435 |
| YP_009303690.1 | NC_031258_p41 | lysin protein | phrog_920 | holin | lysis | 1 | 35518 | 35724 |
| YP_009303680.1 | NC_031258_p31 | head-to-tail joining protein | phrog_449 | head-tail adaptor | connector | 1 | 19172 | 20773 |
| YP_009303671.1 | NC_031258_p22 | DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 14052 | 16166 |
| YP_009303695.1 | NC_031258_p46 | hypothetical protein | phrog_2193 | unknown function | unknown function | 1 | 38996 | 39151 |
| YP_009303665.1 | NC_031258_p16 | N-acetylmuramoyl-L-alanine amidase | phrog_822 | amidase | lysis | 1 | 10432 | 10887 |
| YP_009303689.1 | NC_031258_p40 | tail fibers protein | phrog_6256 | tail fiber protein | tail | 1 | 33565 | 35505 |
| YP_009303676.1 | NC_031258_p27 | hypothetical protein | phrog_107 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 17196 | 18110 |
| YP_009303688.1 | NC_031258_p39 | DNA injection channel protein C | phrog_342 | internal virion protein with endolysin domain | head and packaging | 1 | 29546 | 33493 |
| YP_009303683.1 | NC_031258_p34 | tail tubular protein A | phrog_446 | tail protein | tail | 1 | 23129 | 23719 |