Genomic map of Mycobacterium phage Shipwreck (NC_031261)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_031261
Definition
Mycobacterium phage Shipwreck, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Pclasvirinae; Fishburnevirus; unclassified Fishburnevirus.
DB of origin
REFSEQ
Length
48670
Host Name
Mycobacterium smegmatis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
81
%GC
66.92
Number of singletons
0
Number of paralogs
2

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009303768.1 NC_031261_p10 hypothetical protein phrog_2322 head-tail connector protein connector 1 7307 7630
YP_009303806.1 NC_031261_p48 hypothetical protein phrog_4702 unknown function unknown function 1 33757 33912
YP_009303833.1 NC_031261_p75 hypothetical protein phrog_4550 unknown function unknown function 1 46327 46506
YP_009303805.1 NC_031261_p47 HNH endonuclease phrog_1492 HNH endonuclease DNA, RNA and nucleotide metabolism 1 33269 33760
YP_009303784.1 NC_031261_p26 hypothetical protein phrog_553 minor tail protein tail 1 24000 24695
YP_009303832.1 NC_031261_p74 hypothetical protein phrog_2202 unknown function unknown function 1 46004 46330
YP_009303771.1 NC_031261_p13 major tail subunit phrog_476 major tail protein tail 1 8530 9528
YP_009303770.1 NC_031261_p12 head-to-tail connector complex protein phrog_813 head-tail adaptor connector 1 8001 8438
YP_009303778.1 NC_031261_p20 minor tail protein phrog_346 minor tail protein tail 1 18739 21243
YP_009303823.1 NC_031261_p65 hypothetical protein phrog_2447 replication initiation protein DNA, RNA and nucleotide metabolism 1 41685 42683
YP_009303811.1 NC_031261_p53 translocase phrog_6152 unknown function unknown function 1 36347 37414
YP_009303826.1 NC_031261_p68 hypothetical protein phrog_908 unknown function unknown function 1 43470 44372
YP_009303818.1 NC_031261_p60 hypothetical protein phrog_2060 DNA methyltransferase other 1 40146 40448
YP_009303825.1 NC_031261_p67 hypothetical protein phrog_7254 unknown function unknown function 1 43207 43473
YP_009303795.1 NC_031261_p37 hypothetical protein phrog_3507 unknown function unknown function 1 30616 30915
YP_009303774.1 NC_031261_p16 tape measure protein phrog_2337 tail length tape measure protein tail 1 10574 14344
YP_009303798.1 NC_031261_p40 hypothetical protein phrog_658 unknown function unknown function 1 31614 32117
YP_009303783.1 NC_031261_p25 hypothetical protein phrog_1560 unknown function unknown function 1 23812 24000
YP_009303796.1 NC_031261_p38 hypothetical protein phrog_9041 unknown function unknown function 1 30912 31160
YP_009303839.1 NC_031261_p81 hypothetical protein phrog_1808 HNH endonuclease DNA, RNA and nucleotide metabolism 1 48079 48462
YP_009303785.1 NC_031261_p27 hypothetical protein phrog_1172 unknown function unknown function 1 24716 24850
YP_009303800.1 NC_031261_p42 hypothetical protein phrog_4981 unknown function unknown function 1 32347 32613
YP_009303824.1 NC_031261_p66 hypothetical protein phrog_3599 unknown function unknown function 1 42680 43210
YP_009303838.1 NC_031261_p80 hypothetical protein phrog_7285 unknown function unknown function 1 47826 48074
YP_009303777.1 NC_031261_p19 minor tail protein phrog_732 minor tail protein tail 1 17845 18738
YP_009303797.1 NC_031261_p39 hypothetical protein phrog_5015 unknown function unknown function 1 31157 31552
YP_009303808.1 NC_031261_p50 ssDNA binding protein phrog_148 RecT-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 34832 35806
YP_009303760.1 NC_031261_p2 terminase large subunit phrog_9 terminase large subunit head and packaging 1 401 2077
YP_009303776.1 NC_031261_p18 minor tail protein phrog_110 minor tail protein tail 1 16086 17822
YP_009303804.1 NC_031261_p46 hypothetical protein phrog_11260 unknown function unknown function 1 33147 33269
YP_009303781.1 NC_031261_p23 hypothetical protein phrog_8501 minor tail protein tail 1 23156 23554
YP_009303762.1 NC_031261_p4 capsid maturation protease phrog_2976 head maturation protease head and packaging 1 3539 4876
YP_009303803.1 NC_031261_p45 hypothetical protein phrog_5806 unknown function unknown function 1 33055 33186
YP_009303829.1 NC_031261_p71 hypothetical protein phrog_10505 unknown function unknown function 1 44924 45079
YP_009303817.1 NC_031261_p59 hypothetical protein phrog_8769 methyltransferase other 1 39803 40006
YP_009303791.1 NC_031261_p33 immunity repressor phrog_2328 transcriptional repressor transcription regulation -1 28760 29161
YP_009303779.1 NC_031261_p21 minor tail protein phrog_382 minor tail protein with lysin activity tail 1 21236 22726
YP_009303769.1 NC_031261_p11 hypothetical protein phrog_2325 minor tail protein tail 1 7630 8004
YP_009303794.1 NC_031261_p36 antirepressor phrog_130 anti-repressor Ant transcription regulation 1 29753 30619
YP_009303759.1 NC_031261_p1 terminase small subunit phrog_1496 terminase small subunit head and packaging 1 43 432
YP_009303820.1 NC_031261_p62 hypothetical protein phrog_5921 unknown function unknown function 1 41031 41177
YP_009303830.1 NC_031261_p72 peptidase phrog_5855 unknown function unknown function 1 45152 45652
YP_009303763.1 NC_031261_p5 scaffolding protein phrog_673 head scaffolding protein head and packaging 1 4880 5245
YP_009303799.1 NC_031261_p41 hypothetical protein phrog_4656 unknown function unknown function 1 32117 32350
YP_009303786.1 NC_031261_p28 lysin A phrog_6707 endolysin lysis 1 24925 25869
YP_009303821.1 NC_031261_p63 hypothetical protein phrog_11096 unknown function unknown function 1 41278 41550
YP_009303789.1 NC_031261_p31 hypothetical protein phrog_404 minor tail protein tail 1 27299 27658
YP_009303834.1 NC_031261_p76 hypothetical protein phrog_4738 transcriptional repressor transcription regulation 1 46503 46676
YP_009303807.1 NC_031261_p49 exonuclease phrog_412 exonuclease VIII DNA, RNA and nucleotide metabolism 1 33909 34835
YP_009303835.1 NC_031261_p77 hypothetical protein phrog_20375 unknown function unknown function 1 46673 46837
YP_009303775.1 NC_031261_p17 minor tail protein phrog_106 minor tail protein tail 1 14341 16086
YP_009303816.1 NC_031261_p58 hypothetical protein phrog_7789 unknown function unknown function 1 39691 39780
YP_009303836.1 NC_031261_p78 hypothetical protein phrog_6617 unknown function unknown function 1 47016 47474
YP_009303780.1 NC_031261_p22 hypothetical protein phrog_644 unknown function unknown function 1 22739 23140
YP_009303790.1 NC_031261_p32 integrase phrog_1 integrase integration and excision -1 27733 28626
YP_009303765.1 NC_031261_p7 hypothetical protein phrog_2322 head-tail connector protein connector 1 6226 6576
YP_009303814.1 NC_031261_p56 hypothetical protein phrog_3821 unknown function unknown function 1 38147 38425
YP_009303773.1 NC_031261_p15 tail assembly chaperone phrog_621 tail assembly chaperone tail 1 9642 10241
YP_009303827.1 NC_031261_p69 hypothetical protein phrog_18047 unknown function unknown function 1 44372 44638
YP_009303837.1 NC_031261_p79 hypothetical protein phrog_1186 unknown function unknown function 1 47471 47839
YP_009303801.1 NC_031261_p43 hypothetical protein phrog_5803 unknown function unknown function 1 32610 32882
YP_009303809.1 NC_031261_p51 hypothetical protein phrog_11327 unknown function unknown function 1 35803 36015
YP_009303782.1 NC_031261_p24 hypothetical protein phrog_8357 unknown function unknown function 1 23569 23799
YP_009303766.1 NC_031261_p8 head-to-tail connector complex protein phrog_137 head-tail adaptor Ad1 connector 1 6580 6942
YP_009303793.1 NC_031261_p35 hypothetical protein phrog_1622 unknown function unknown function 1 29520 29756
YP_009303792.1 NC_031261_p34 HTH DNA binding domain protein phrog_66 excisionase and transcriptional regulator integration and excision 1 29290 29523
YP_009303819.1 NC_031261_p61 HTH DNA binding domain protein phrog_7170 HTH DNA binding protein DNA, RNA and nucleotide metabolism 1 40445 41038
YP_009303761.1 NC_031261_p3 portal protein phrog_113 portal protein head and packaging 1 2094 3548
YP_009303831.1 NC_031261_p73 hypothetical protein phrog_7429 unknown function unknown function 1 45728 45940
YP_009303802.1 NC_031261_p44 hypothetical protein phrog_5559 unknown function unknown function 1 32879 33058
YP_009303828.1 NC_031261_p70 hypothetical protein phrog_2074 unknown function unknown function 1 44643 44897
YP_009303787.1 NC_031261_p29 lysin B phrog_102 endolysin lysis 1 25866 27032
YP_009303788.1 NC_031261_p30 hypothetical protein phrog_443 holin lysis 1 27054 27302
YP_009303812.1 NC_031261_p54 endonuclease phrog_140 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 37411 37914
YP_009303767.1 NC_031261_p9 head-to-tail connector complex protein phrog_6553 head closure Hc1 connector 1 6942 7292
YP_009303815.1 NC_031261_p57 DNA methylase phrog_67 DNA methyltransferase other 1 38422 39615
YP_009303822.1 NC_031261_p64 hypothetical protein phrog_2451 unknown function unknown function 1 41547 41681
YP_009303810.1 NC_031261_p52 hypothetical protein phrog_4387 unknown function unknown function 1 36012 36350
YP_009303764.1 NC_031261_p6 major capsid protein phrog_1650 major head protein head and packaging 1 5282 6226
YP_009303813.1 NC_031261_p55 hypothetical protein phrog_6109 unknown function unknown function 1 37908 38150
YP_009303772.1 NC_031261_p14 tail assembly chaperone phrog_621 tail assembly chaperone tail 1 9642 10560