| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_031262 |
Definition |
Mycobacterium phage Brocalys, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Cheoctovirus; unclassified Cheoctovirus. |
DB of origin |
REFSEQ |
Length |
54751 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
96 |
%GC |
61.77 |
Number of singletons |
1 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009303871.1 | NC_031262_p32 | hypothetical protein | phrog_1839 | unknown function | unknown function | 1 | 26290 | 26382 |
| YP_009303915.1 | NC_031262_p76 | hypothetical protein | phrog_1901 | unknown function | unknown function | 1 | 47578 | 47769 |
| YP_009303899.1 | NC_031262_p60 | hypothetical protein | phrog_740 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 39296 | 39658 |
| YP_009303866.1 | NC_031262_p27 | holin | phrog_443 | holin | lysis | 1 | 24320 | 24553 |
| YP_009303888.1 | NC_031262_p49 | hypothetical protein | phrog_1797 | unknown function | unknown function | 1 | 34514 | 35161 |
| YP_009303927.1 | NC_031262_p88 | hypothetical protein | phrog_419 | unknown function | unknown function | 1 | 50717 | 50998 |
| YP_009303889.1 | NC_031262_p50 | hypothetical protein | phrog_1849 | unknown function | unknown function | 1 | 35241 | 35519 |
| YP_009303910.1 | NC_031262_p71 | hypothetical protein | phrog_1573 | DNA methyltransferase | other | 1 | 46210 | 46635 |
| YP_009303879.1 | NC_031262_p40 | peptidase | phrog_87 | metallo-protease | other | -1 | 29501 | 29944 |
| YP_009303886.1 | NC_031262_p47 | hypothetical protein | phrog_1840 | excisionase | integration and excision | 1 | 34063 | 34332 |
| YP_009303841.1 | NC_031262_p2 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 572 | 2209 |
| YP_009303923.1 | NC_031262_p84 | hypothetical protein | phrog_1467 | unknown function | unknown function | 1 | 49330 | 50001 |
| YP_009303911.1 | NC_031262_p72 | hypothetical protein | phrog_9921 | unknown function | unknown function | 1 | 46635 | 46727 |
| YP_009303876.1 | NC_031262_p37 | antitoxin | phrog_1213 | RelE-like toxin | moron, auxiliary metabolic gene and host takeover | 1 | 28444 | 28755 |
| YP_009303905.1 | NC_031262_p66 | hypothetical protein | phrog_3171 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 44419 | 45381 |
| YP_009303849.1 | NC_031262_p10 | head-to-tail connector | phrog_813 | head-tail adaptor | connector | 1 | 7084 | 7488 |
| YP_009303855.1 | NC_031262_p16 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 14792 | 16501 |
| YP_009303878.1 | NC_031262_p39 | hypothetical protein | phrog_1948 | unknown function | unknown function | -1 | 29011 | 29463 |
| YP_009303859.1 | NC_031262_p20 | minor tail protein | phrog_416 | minor tail protein | tail | 1 | 19901 | 21058 |
| YP_009303907.1 | NC_031262_p68 | hypothetical protein | phrog_9299 | unknown function | unknown function | 1 | 45547 | 45642 |
| YP_009303850.1 | NC_031262_p11 | major tail subunit | phrog_476 | major tail protein | tail | 1 | 7598 | 8407 |
| YP_009303874.1 | NC_031262_p35 | hypothetical protein | singleton | unknown function | unknown function | 1 | 26830 | 26994 |
| YP_009303913.1 | NC_031262_p74 | hypothetical protein | phrog_10032 | unknown function | unknown function | 1 | 47208 | 47372 |
| YP_009303900.1 | NC_031262_p61 | DNA methylase | phrog_16 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 39655 | 43206 |
| YP_009303845.1 | NC_031262_p6 | major capsid protein | phrog_267 | major head protein | head and packaging | 1 | 5036 | 5857 |
| YP_009303870.1 | NC_031262_p31 | hypothetical protein | phrog_1791 | unknown function | unknown function | 1 | 25986 | 26297 |
| YP_009303842.1 | NC_031262_p3 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 2240 | 3598 |
| YP_009303853.1 | NC_031262_p14 | tape measure protein | phrog_1942 | tail length tape measure protein | tail | 1 | 9475 | 12996 |
| YP_009303897.1 | NC_031262_p58 | hypothetical protein | phrog_5168 | unknown function | unknown function | 1 | 37861 | 38325 |
| YP_009303934.1 | NC_031262_p95 | glycosyltransferase | phrog_854 | glucosyltransferase | moron, auxiliary metabolic gene and host takeover | 1 | 53660 | 54283 |
| YP_009303881.1 | NC_031262_p42 | hypothetical protein | phrog_19814 | unknown function | unknown function | 1 | 30791 | 31153 |
| YP_009303852.1 | NC_031262_p13 | tail assembly chaperone | phrog_621 | tail assembly chaperone | tail | 1 | 8521 | 9072 |
| YP_009303925.1 | NC_031262_p86 | hypothetical protein | phrog_13974 | membrane protein | moron, auxiliary metabolic gene and host takeover | 1 | 50287 | 50589 |
| YP_009303931.1 | NC_031262_p92 | hypothetical protein | phrog_2057 | unknown function | unknown function | 1 | 51840 | 52001 |
| YP_009303882.1 | NC_031262_p43 | antirepressor protein | phrog_130 | anti-repressor Ant | transcription regulation | 1 | 31207 | 31986 |
| YP_009303891.1 | NC_031262_p52 | transcription factor WhiB | phrog_1333 | unknown function | unknown function | 1 | 35863 | 36357 |
| YP_009303873.1 | NC_031262_p34 | hypothetical protein | phrog_2437 | unknown function | unknown function | -1 | 26631 | 26831 |
| YP_009303912.1 | NC_031262_p73 | hypothetical protein | phrog_1900 | mobile element MPME | moron, auxiliary metabolic gene and host takeover | 1 | 46835 | 47206 |
| YP_009303865.1 | NC_031262_p26 | lysin B | phrog_102 | endolysin | lysis | 1 | 23309 | 24310 |
| YP_009303846.1 | NC_031262_p7 | head-to-tail connector | phrog_2377 | head-tail adaptor Ad1 | connector | 1 | 5866 | 6435 |
| YP_009303892.1 | NC_031262_p53 | hypothetical protein | phrog_2096 | unknown function | unknown function | 1 | 36354 | 36839 |
| YP_009303851.1 | NC_031262_p12 | tail assembly chaperone | phrog_978 | tail assembly chaperone | tail | 1 | 8521 | 9457 |
| YP_009303880.1 | NC_031262_p41 | immunity repressor | phrog_20450 | transcriptional repressor | transcription regulation | -1 | 30128 | 30691 |
| YP_009303896.1 | NC_031262_p57 | hypothetical protein | phrog_1834 | unknown function | unknown function | 1 | 37631 | 37864 |
| YP_009303875.1 | NC_031262_p36 | integrase | phrog_1 | integrase | integration and excision | 1 | 27204 | 28322 |
| YP_009303840.1 | NC_031262_p1 | terminase small subunit | phrog_226 | minor tail protein | tail | 1 | 109 | 564 |
| YP_009303884.1 | NC_031262_p45 | hypothetical protein | phrog_4652 | unknown function | unknown function | 1 | 32741 | 33487 |
| YP_009303854.1 | NC_031262_p15 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 12997 | 14706 |
| YP_009303862.1 | NC_031262_p23 | hypothetical protein | phrog_1172 | unknown function | unknown function | 1 | 21674 | 21850 |
| YP_009303906.1 | NC_031262_p67 | hypothetical protein | phrog_2080 | unknown function | unknown function | 1 | 45378 | 45569 |
| YP_009303864.1 | NC_031262_p25 | lysin A | phrog_700 | endolysin | lysis | 1 | 22152 | 23312 |
| YP_009303894.1 | NC_031262_p55 | HTH DNA binding protein | phrog_664 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 37114 | 37479 |
| YP_009303856.1 | NC_031262_p17 | minor tail protein | phrog_732 | minor tail protein | tail | 1 | 16538 | 17386 |
| YP_009303908.1 | NC_031262_p69 | hypothetical protein | phrog_6275 | unknown function | unknown function | 1 | 45639 | 46019 |
| YP_009303930.1 | NC_031262_p91 | hypothetical protein | phrog_1385 | unknown function | unknown function | 1 | 51605 | 51847 |
| YP_009303928.1 | NC_031262_p89 | hypothetical protein | phrog_1694 | unknown function | unknown function | 1 | 50998 | 51198 |
| YP_009303916.1 | NC_031262_p77 | hypothetical protein | phrog_1091 | unknown function | unknown function | 1 | 47745 | 47945 |
| YP_009303887.1 | NC_031262_p48 | hypothetical protein | phrog_1816 | unknown function | unknown function | 1 | 34329 | 34517 |
| YP_009303935.1 | NC_031262_p96 | HNH homing endonuclease | phrog_144 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 54283 | 54609 |
| YP_009303918.1 | NC_031262_p79 | hypothetical protein | phrog_5186 | unknown function | unknown function | 1 | 48079 | 48252 |
| YP_009303861.1 | NC_031262_p22 | hypothetical protein | phrog_240 | head protein | head and packaging | 1 | 21294 | 21674 |
| YP_009303885.1 | NC_031262_p46 | hypothetical protein | phrog_15946 | unknown function | unknown function | 1 | 33502 | 33957 |
| YP_009303863.1 | NC_031262_p24 | hypothetical protein | phrog_747 | unknown function | unknown function | 1 | 21916 | 22155 |
| YP_009303869.1 | NC_031262_p30 | DnaQ-like exonuclease | phrog_403 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 25168 | 25989 |
| YP_009303933.1 | NC_031262_p94 | serine/threonine kinase | phrog_1693 | unknown function | unknown function | 1 | 53457 | 53663 |
| YP_009303919.1 | NC_031262_p80 | hypothetical protein | phrog_4126 | unknown function | unknown function | 1 | 48249 | 48368 |
| YP_009303926.1 | NC_031262_p87 | hypothetical protein | phrog_14508 | unknown function | unknown function | 1 | 50586 | 50708 |
| YP_009303893.1 | NC_031262_p54 | transcription factor WhiB | phrog_472 | WhiB transcriptional factor | transcription regulation | 1 | 36836 | 37117 |
| YP_009303898.1 | NC_031262_p59 | AAA ATPase | phrog_1366 | unknown function | unknown function | 1 | 38322 | 39299 |
| YP_009303858.1 | NC_031262_p19 | minor tail protein | phrog_2235 | minor tail protein | tail | 1 | 19647 | 19901 |
| YP_009303872.1 | NC_031262_p33 | hypothetical protein | phrog_3693 | unknown function | unknown function | -1 | 26485 | 26649 |
| YP_009303867.1 | NC_031262_p28 | hypothetical protein | phrog_404 | minor tail protein | tail | 1 | 24550 | 24924 |
| YP_009303922.1 | NC_031262_p83 | GIY-YIG homing endonuclease | phrog_3312 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 48806 | 49333 |
| YP_009303903.1 | NC_031262_p64 | hypothetical protein | phrog_2070 | unknown function | unknown function | 1 | 43567 | 43719 |
| YP_009303920.1 | NC_031262_p81 | hypothetical protein | phrog_2278 | unknown function | unknown function | 1 | 48365 | 48697 |
| YP_009303868.1 | NC_031262_p29 | hypothetical protein | phrog_2004 | unknown function | unknown function | 1 | 24921 | 25181 |
| YP_009303902.1 | NC_031262_p63 | hypothetical protein | phrog_2704 | unknown function | unknown function | 1 | 43421 | 43570 |
| YP_009303848.1 | NC_031262_p9 | head-to-tail connector | phrog_1929 | head-tail connector protein | connector | 1 | 6768 | 7094 |
| YP_009303877.1 | NC_031262_p38 | toxin | phrog_2268 | antitoxin from a toxin-antitoxin system | moron, auxiliary metabolic gene and host takeover | 1 | 28752 | 29000 |
| YP_009303901.1 | NC_031262_p62 | hypothetical protein | phrog_7443 | unknown function | unknown function | 1 | 43203 | 43424 |
| YP_009303847.1 | NC_031262_p8 | head-to-tail connector | phrog_763 | head-tail adaptor | connector | 1 | 6432 | 6761 |
| YP_009303883.1 | NC_031262_p44 | hypothetical protein | phrog_18246 | unknown function | unknown function | 1 | 31989 | 32504 |
| YP_009303909.1 | NC_031262_p70 | hypothetical protein | phrog_1943 | unknown function | unknown function | 1 | 46019 | 46213 |
| YP_009303895.1 | NC_031262_p56 | hypothetical protein | phrog_2078 | unknown function | unknown function | 1 | 37476 | 37631 |
| YP_009303843.1 | NC_031262_p4 | capsid maturation protease | phrog_1522 | head maturation protease | head and packaging | 1 | 3585 | 4340 |
| YP_009303914.1 | NC_031262_p75 | hypothetical protein | phrog_2939 | unknown function | unknown function | 1 | 47369 | 47581 |
| YP_009303921.1 | NC_031262_p82 | hypothetical protein | phrog_6194 | unknown function | unknown function | 1 | 48694 | 48771 |
| YP_009303932.1 | NC_031262_p93 | glycosyltransferase | phrog_1579 | glycosyltransferase | moron, auxiliary metabolic gene and host takeover | 1 | 52018 | 53454 |
| YP_009303860.1 | NC_031262_p21 | hypothetical protein | phrog_6030 | unknown function | unknown function | 1 | 21055 | 21294 |
| YP_009303924.1 | NC_031262_p85 | hypothetical protein | phrog_15959 | unknown function | unknown function | 1 | 50042 | 50290 |
| YP_009303844.1 | NC_031262_p5 | scaffolding protein | phrog_2592 | head scaffolding protein | head and packaging | 1 | 4424 | 5017 |
| YP_009303904.1 | NC_031262_p65 | GIY-YIG homing endonuclease | phrog_3312 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 43817 | 44419 |
| YP_009303890.1 | NC_031262_p51 | hypothetical protein | phrog_658 | unknown function | unknown function | 1 | 35516 | 35863 |
| YP_009303917.1 | NC_031262_p78 | hypothetical protein | phrog_1545 | unknown function | unknown function | 1 | 47927 | 48082 |
| YP_009303929.1 | NC_031262_p90 | hypothetical protein | phrog_1186 | unknown function | unknown function | 1 | 51195 | 51608 |
| YP_009303857.1 | NC_031262_p18 | minor tail protein | phrog_3493 | minor tail protein | tail | 1 | 17383 | 19617 |