| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_031281 |
Definition |
Mycobacterium phage Panchino, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Nclasvirinae; Redivirus. |
DB of origin |
REFSEQ |
Length |
43516 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
66 |
%GC |
65.94 |
Number of singletons |
1 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009304930.1 | NC_031281_p22 | hypothetical protein | phrog_6374 | unknown function | unknown function | 1 | 21232 | 21384 |
| YP_009304936.1 | NC_031281_p28 | type 1 restriction enzyme | singleton | unknown function | unknown function | -1 | 24257 | 26740 |
| YP_009304958.1 | NC_031281_p50 | hypothetical protein | phrog_3821 | unknown function | unknown function | 1 | 36267 | 36539 |
| YP_009304940.1 | NC_031281_p32 | integrase | phrog_1 | integrase | integration and excision | -1 | 28163 | 29134 |
| YP_009304960.1 | NC_031281_p52 | hypothetical protein | phrog_5505 | unknown function | unknown function | 1 | 36826 | 37047 |
| YP_009304923.1 | NC_031281_p15 | tail assembly chaperone | phrog_621 | tail assembly chaperone | tail | 1 | 9057 | 9587 |
| YP_009304933.1 | NC_031281_p25 | lysin A | phrog_1519 | endolysin | lysis | 1 | 21997 | 23352 |
| YP_009304954.1 | NC_031281_p46 | hypothetical protein | phrog_4387 | unknown function | unknown function | 1 | 35062 | 35424 |
| YP_009304956.1 | NC_031281_p48 | glutaredoxin | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | 1 | 35810 | 36058 |
| YP_009304927.1 | NC_031281_p19 | minor tail protein | phrog_732 | minor tail protein | tail | 1 | 16691 | 17533 |
| YP_009304942.1 | NC_031281_p34 | excise | phrog_4583 | transcriptional repressor | transcription regulation | 1 | 29645 | 29878 |
| YP_009304973.1 | NC_031281_p65 | hypothetical protein | phrog_1385 | unknown function | unknown function | 1 | 42798 | 43043 |
| YP_009304934.1 | NC_031281_p26 | holin | phrog_526 | holin | lysis | 1 | 23349 | 23753 |
| YP_009304968.1 | NC_031281_p60 | hypothetical protein | phrog_14001 | unknown function | unknown function | 1 | 40763 | 41095 |
| YP_009304965.1 | NC_031281_p57 | HTH DNA-binding protein | phrog_1408 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 39053 | 39931 |
| YP_009304910.1 | NC_031281_p2 | terminase | phrog_9 | terminase large subunit | head and packaging | 1 | 509 | 2044 |
| YP_009304957.1 | NC_031281_p49 | hypothetical protein | phrog_10863 | unknown function | unknown function | 1 | 36055 | 36270 |
| YP_009304914.1 | NC_031281_p6 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 4389 | 5684 |
| YP_009304911.1 | NC_031281_p3 | hypothetical protein | phrog_6750 | unknown function | unknown function | 1 | 2037 | 2246 |
| YP_009304938.1 | NC_031281_p30 | hypothetical protein | phrog_16337 | membrane protein | moron, auxiliary metabolic gene and host takeover | -1 | 27215 | 27745 |
| YP_009304928.1 | NC_031281_p20 | minor tail protein | phrog_746 | minor tail protein | tail | 1 | 17533 | 20178 |
| YP_009304972.1 | NC_031281_p64 | hypothetical protein | phrog_1186 | unknown function | unknown function | 1 | 42391 | 42801 |
| YP_009304917.1 | NC_031281_p9 | hypothetical protein | phrog_1531 | head closure | connector | 1 | 6455 | 6799 |
| YP_009304959.1 | NC_031281_p51 | hypothetical protein | phrog_11218 | unknown function | unknown function | 1 | 36536 | 36829 |
| YP_009304920.1 | NC_031281_p12 | hypothetical protein | phrog_813 | head-tail adaptor | connector | 1 | 7364 | 7783 |
| YP_009304922.1 | NC_031281_p14 | tail assembly chaperone | phrog_978 | tail assembly chaperone | tail | 1 | 9057 | 9963 |
| YP_009304919.1 | NC_031281_p11 | head-to-tail connector | phrog_2325 | minor tail protein | tail | 1 | 6996 | 7367 |
| YP_009304924.1 | NC_031281_p16 | tape measure protein | phrog_2337 | tail length tape measure protein | tail | 1 | 10145 | 13243 |
| YP_009304950.1 | NC_031281_p42 | WhiB family transcription factor | phrog_1333 | unknown function | unknown function | 1 | 32264 | 32647 |
| YP_009304932.1 | NC_031281_p24 | hypothetical protein | phrog_1172 | unknown function | unknown function | 1 | 21760 | 21927 |
| YP_009304974.1 | NC_031281_p66 | HNH endonuclease | phrog_1808 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 43021 | 43329 |
| YP_009304943.1 | NC_031281_p35 | hypothetical protein | phrog_3507 | unknown function | unknown function | 1 | 29875 | 30222 |
| YP_009304955.1 | NC_031281_p47 | resolvase | phrog_244 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 35421 | 35813 |
| YP_009304969.1 | NC_031281_p61 | hypothetical protein | phrog_908 | unknown function | unknown function | 1 | 41092 | 41757 |
| YP_009304935.1 | NC_031281_p27 | minor tail protein | phrog_404 | minor tail protein | tail | 1 | 23750 | 24223 |
| YP_009304966.1 | NC_031281_p58 | hypothetical protein | phrog_3599 | unknown function | unknown function | 1 | 39928 | 40521 |
| YP_009304916.1 | NC_031281_p8 | head-to-tail connector | phrog_442 | head-tail adaptor | connector | 1 | 5973 | 6458 |
| YP_009304964.1 | NC_031281_p56 | hypothetical protein | phrog_2451 | unknown function | unknown function | 1 | 38919 | 39056 |
| YP_009304953.1 | NC_031281_p45 | ssDNA binding protein | phrog_148 | RecT-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 34001 | 35065 |
| YP_009304918.1 | NC_031281_p10 | hypothetical protein | phrog_8006 | neck protein | connector | 1 | 6812 | 7009 |
| YP_009304961.1 | NC_031281_p53 | hypothetical protein | phrog_2045 | unknown function | unknown function | 1 | 37157 | 38233 |
| YP_009304921.1 | NC_031281_p13 | major tail protein | phrog_476 | major tail protein | tail | 1 | 7899 | 8957 |
| YP_009304971.1 | NC_031281_p63 | hypothetical protein | phrog_1694 | unknown function | unknown function | 1 | 42170 | 42394 |
| YP_009304948.1 | NC_031281_p40 | hypothetical protein | phrog_16008 | unknown function | unknown function | 1 | 31588 | 31998 |
| YP_009304912.1 | NC_031281_p4 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 2263 | 3552 |
| YP_009304945.1 | NC_031281_p37 | hypothetical protein | phrog_5081 | unknown function | unknown function | 1 | 30389 | 30883 |
| YP_009304946.1 | NC_031281_p38 | hypothetical protein | phrog_9601 | unknown function | unknown function | 1 | 30942 | 31196 |
| YP_009304915.1 | NC_031281_p7 | hypothetical protein | phrog_7530 | unknown function | unknown function | 1 | 5753 | 5980 |
| YP_009304926.1 | NC_031281_p18 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 14966 | 16675 |
| YP_009304947.1 | NC_031281_p39 | hypothetical protein | phrog_549 | unknown function | unknown function | 1 | 31193 | 31591 |
| YP_009304937.1 | NC_031281_p29 | hypothetical protein | phrog_16514 | unknown function | unknown function | -1 | 26995 | 27165 |
| YP_009304962.1 | NC_031281_p54 | hypothetical protein | phrog_464 | unknown function | unknown function | 1 | 38226 | 38558 |
| YP_009304963.1 | NC_031281_p55 | methylase | phrog_11096 | unknown function | unknown function | 1 | 38551 | 38922 |
| YP_009304951.1 | NC_031281_p43 | hypothetical protein | phrog_11506 | unknown function | unknown function | 1 | 32644 | 32988 |
| YP_009304944.1 | NC_031281_p36 | hypothetical protein | phrog_26034 | membrane protein | moron, auxiliary metabolic gene and host takeover | 1 | 30219 | 30392 |
| YP_009304939.1 | NC_031281_p31 | hypothetical protein | phrog_1712 | unknown function | unknown function | -1 | 27788 | 28129 |
| YP_009304913.1 | NC_031281_p5 | capsid maturation protease | phrog_80 | head maturation protease | head and packaging | 1 | 3555 | 4361 |
| YP_009304949.1 | NC_031281_p41 | hypothetical protein | phrog_8273 | unknown function | unknown function | 1 | 31995 | 32267 |
| YP_009304909.1 | NC_031281_p1 | hypothetical protein | phrog_6975 | unknown function | unknown function | 1 | 63 | 512 |
| YP_009304931.1 | NC_031281_p23 | hypothetical protein | phrog_240 | head protein | head and packaging | 1 | 21401 | 21763 |
| YP_009304967.1 | NC_031281_p59 | hypothetical protein | phrog_6821 | unknown function | unknown function | 1 | 40518 | 40766 |
| YP_009304970.1 | NC_031281_p62 | hypothetical protein | phrog_27168 | unknown function | unknown function | 1 | 41901 | 42167 |
| YP_009304952.1 | NC_031281_p44 | exonuclease | phrog_434 | RecE-like recombination exonuclease | DNA, RNA and nucleotide metabolism | 1 | 32985 | 33995 |
| YP_009304925.1 | NC_031281_p17 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 13245 | 14966 |
| YP_009304929.1 | NC_031281_p21 | minor tail protein | phrog_416 | minor tail protein | tail | 1 | 20180 | 21217 |
| YP_009304941.1 | NC_031281_p33 | immunity repressor | phrog_2328 | transcriptional repressor | transcription regulation | -1 | 29140 | 29511 |