| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_031920 |
Definition |
Streptococcus phage phiARI0004, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
41105 |
Host Name |
Streptococcus pneumoniae |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
48 |
%GC |
40.65 |
Number of singletons |
0 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009322367.1 | NC_031920_p38 | hypothetical protein | phrog_4614 | unknown function | unknown function | -1 | 33399 | 33509 |
| YP_009322346.1 | NC_031920_p17 | hypothetical protein | phrog_774 | unknown function | unknown function | -1 | 18689 | 18901 |
| YP_009322374.1 | NC_031920_p45 | hypothetical protein | phrog_5570 | unknown function | unknown function | -1 | 37306 | 37581 |
| YP_009322336.1 | NC_031920_p7 | hypothetical protein | phrog_1194 | unknown function | unknown function | -1 | 10035 | 10385 |
| YP_009322355.1 | NC_031920_p26 | hypothetical protein | phrog_2715 | unknown function | unknown function | -1 | 26067 | 26516 |
| YP_009322357.1 | NC_031920_p28 | DUF1642 domain protein | phrog_121 | unknown function | unknown function | -1 | 27561 | 28235 |
| YP_009322341.1 | NC_031920_p12 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | -1 | 15589 | 16104 |
| YP_009322368.1 | NC_031920_p39 | hypothetical protein | phrog_22807 | unknown function | unknown function | -1 | 33587 | 33709 |
| YP_009322366.1 | NC_031920_p37 | hypothetical protein | phrog_16291 | unknown function | unknown function | -1 | 33148 | 33333 |
| YP_009322330.1 | NC_031920_p1 | hypothetical protein | phrog_12172 | unknown function | unknown function | -1 | 11 | 268 |
| YP_009322333.1 | NC_031920_p4 | hypothetical protein | phrog_1164 | unknown function | unknown function | -1 | 2103 | 2453 |
| YP_009322340.1 | NC_031920_p11 | hypothetical protein | phrog_78 | tail terminator | connector | -1 | 15224 | 15592 |
| YP_009322375.1 | NC_031920_p46 | HTH_19 domain protein | phrog_4 | transcriptional repressor | transcription regulation | 1 | 37742 | 38494 |
| YP_009322344.1 | NC_031920_p15 | hypothetical protein | phrog_544 | major head protein | head and packaging | -1 | 17083 | 17928 |
| YP_009322370.1 | NC_031920_p41 | hypothetical protein | phrog_2648 | unknown function | unknown function | -1 | 34115 | 34336 |
| YP_009322359.1 | NC_031920_p30 | hypothetical protein | phrog_2131 | unknown function | unknown function | -1 | 28599 | 29021 |
| YP_009322362.1 | NC_031920_p33 | cytosine specific DNA methyltransferase | phrog_67 | DNA methyltransferase | other | -1 | 30044 | 30739 |
| YP_009322342.1 | NC_031920_p13 | hypothetical protein | phrog_933 | unknown function | unknown function | -1 | 16711 | 16899 |
| YP_009322356.1 | NC_031920_p27 | hypothetical protein | phrog_2003 | unknown function | unknown function | -1 | 27274 | 27561 |
| YP_009322334.1 | NC_031920_p5 | hypothetical protein | phrog_1137 | unknown function | unknown function | -1 | 2456 | 2659 |
| YP_009322354.1 | NC_031920_p25 | YopX domain protein | phrog_98 | unknown function | unknown function | -1 | 25656 | 26048 |
| YP_009322376.1 | NC_031920_p47 | PemK domain protein | phrog_1412 | antitoxin mazE-like | moron, auxiliary metabolic gene and host takeover | 1 | 38496 | 39260 |
| YP_009322373.1 | NC_031920_p44 | hypothetical protein | phrog_4488 | unknown function | unknown function | -1 | 37110 | 37232 |
| YP_009322369.1 | NC_031920_p40 | hypothetical protein | phrog_8343 | unknown function | unknown function | -1 | 33860 | 34114 |
| YP_009322347.1 | NC_031920_p18 | hypothetical protein | phrog_5469 | unknown function | unknown function | -1 | 18856 | 19020 |
| YP_009322365.1 | NC_031920_p36 | RecT domain protein | phrog_2760 | RecT-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 32378 | 33130 |
| YP_009322372.1 | NC_031920_p43 | hypothetical protein | phrog_3 | transcriptional repressor | transcription regulation | -1 | 35855 | 36091 |
| YP_009322364.1 | NC_031920_p35 | DUF1351 domain protein | phrog_674 | unknown function | unknown function | -1 | 31304 | 32368 |
| YP_009322348.1 | NC_031920_p19 | hypothetical protein | phrog_2841 | minor head protein | head and packaging | -1 | 19370 | 20866 |
| YP_009322337.1 | NC_031920_p8 | hypothetical protein | phrog_1535 | tail length tape measure protein | tail | -1 | 10394 | 14047 |
| YP_009322361.1 | NC_031920_p32 | hypothetical protein | phrog_1341 | unknown function | unknown function | -1 | 29490 | 29819 |
| YP_009322363.1 | NC_031920_p34 | single stranded DNA binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 30752 | 31168 |
| YP_009322343.1 | NC_031920_p14 | hypothetical protein | phrog_2250 | unknown function | unknown function | -1 | 16889 | 17071 |
| YP_009322371.1 | NC_031920_p42 | hypothetical protein | phrog_3624 | unknown function | unknown function | -1 | 34336 | 34497 |
| YP_009322352.1 | NC_031920_p23 | DUF1492 domain protein | phrog_36 | transcriptional regulator | transcription regulation | -1 | 24494 | 24853 |
| YP_009322360.1 | NC_031920_p31 | rusA domain protein | phrog_140 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | -1 | 29065 | 29493 |
| YP_009322335.1 | NC_031920_p6 | peptidase_S74 domain protein | phrog_1210 | PblB-type receptor binding | other | -1 | 2753 | 10030 |
| YP_009322377.1 | NC_031920_p48 | Resolvase domain protein | phrog_95 | integrase | integration and excision | 1 | 39567 | 41012 |
| YP_009322339.1 | NC_031920_p10 | tail_3 domain protein | phrog_158 | major tail protein | tail | -1 | 14808 | 15221 |
| YP_009322345.1 | NC_031920_p16 | hypothetical protein | phrog_172 | head scaffolding protein | head and packaging | -1 | 17935 | 18519 |
| YP_009322350.1 | NC_031920_p21 | terminase_3 domain protein | phrog_2 | terminase large subunit | head and packaging | -1 | 22310 | 23608 |
| YP_009322349.1 | NC_031920_p20 | hypothetical protein | phrog_64 | portal protein | head and packaging | -1 | 20829 | 22298 |
| YP_009322351.1 | NC_031920_p22 | terminase_2 domain protein | phrog_51 | terminase small subunit | head and packaging | -1 | 23586 | 24026 |
| YP_009322358.1 | NC_031920_p29 | hypothetical protein | phrog_834 | unknown function | unknown function | -1 | 28237 | 28554 |
| YP_009322338.1 | NC_031920_p9 | hypothetical protein | phrog_183 | tail chaperone protein | tail | -1 | 14423 | 14803 |
| YP_009322332.1 | NC_031920_p3 | holin_LLH domain protein | phrog_608 | holin | lysis | -1 | 1456 | 1791 |
| YP_009322353.1 | NC_031920_p24 | hypothetical protein | phrog_3476 | unknown function | unknown function | -1 | 24971 | 25342 |
| YP_009322331.1 | NC_031920_p2 | amidase_2 domain protein | phrog_1110 | endolysin | lysis | -1 | 500 | 1456 |