| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_031925 |
Definition |
Salmonella phage BPS11Q3, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Guernseyvirinae; Jerseyvirus; unclassified Jerseyvirus. |
DB of origin |
REFSEQ |
Length |
43788 |
Host Name |
Salmonella enterica |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
65 |
%GC |
49.7 |
Number of singletons |
2 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009322822.1 | NC_031925_p15 | hypothetical protein | phrog_10200 | unknown function | unknown function | -1 | 9880 | 10029 |
| YP_009322832.1 | NC_031925_p25 | hypothetical protein | phrog_3766 | unknown function | unknown function | -1 | 12857 | 13060 |
| YP_009322872.1 | NC_031925_p65 | head protein | phrog_4366 | head fiber protein | head and packaging | -1 | 43291 | 43575 |
| YP_009322841.1 | NC_031925_p34 | DNA-binding protein | phrog_3 | transcriptional repressor | transcription regulation | -1 | 18381 | 18599 |
| YP_009322826.1 | NC_031925_p19 | hypothetical protein | phrog_2180 | unknown function | unknown function | -1 | 10560 | 10745 |
| YP_009322835.1 | NC_031925_p28 | hypothetical protein | phrog_9384 | unknown function | unknown function | -1 | 13954 | 14118 |
| YP_009322846.1 | NC_031925_p39 | hypothetical protein | phrog_10404 | unknown function | unknown function | 1 | 24595 | 24726 |
| YP_009322816.1 | NC_031925_p9 | portal protein | phrog_145 | portal protein | head and packaging | -1 | 5689 | 7161 |
| YP_009322854.1 | NC_031925_p47 | hypothetical protein | phrog_329 | minor tail protein | tail | -1 | 32180 | 32545 |
| YP_009322844.1 | NC_031925_p37 | DNA polymerase | phrog_112 | Gp2.5-like ssDNA binding protein and ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 20823 | 21449 |
| YP_009322863.1 | NC_031925_p56 | DNA-binding protein | phrog_63 | anti-repressor Ant | transcription regulation | 1 | 38544 | 39215 |
| YP_009322849.1 | NC_031925_p42 | hypothetical protein | phrog_4879 | unknown function | unknown function | 1 | 25615 | 25806 |
| YP_009322824.1 | NC_031925_p17 | hypothetical protein | phrog_4684 | unknown function | unknown function | -1 | 10253 | 10408 |
| YP_009322864.1 | NC_031925_p57 | tail protein | phrog_290 | minor tail protein | tail | -1 | 39244 | 40413 |
| YP_009322865.1 | NC_031925_p58 | tail protein | phrog_179 | tail terminator | connector | -1 | 40413 | 40832 |
| YP_009322820.1 | NC_031925_p13 | hypothetical protein | phrog_31127 | unknown function | unknown function | -1 | 9360 | 9539 |
| YP_009322848.1 | NC_031925_p41 | restriction endonuclease | phrog_93 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 25296 | 25583 |
| YP_009322855.1 | NC_031925_p48 | hypothetical protein | phrog_396 | minor tail protein | tail | -1 | 32542 | 33057 |
| YP_009322815.1 | NC_031925_p8 | amidase | phrog_6095 | amidase | lysis | 1 | 5005 | 5658 |
| YP_009322867.1 | NC_031925_p60 | tail protein | phrog_161 | head closure Hc1 | connector | -1 | 41224 | 41583 |
| YP_009322869.1 | NC_031925_p62 | head-tail joining protein | phrog_477 | head-tail adaptor Ad1 | connector | -1 | 42191 | 42700 |
| YP_009322856.1 | NC_031925_p49 | hypothetical protein | phrog_384 | virion structural protein | head and packaging | -1 | 33054 | 33497 |
| YP_009322847.1 | NC_031925_p40 | NHN endonuclease | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 24809 | 25306 |
| YP_009322837.1 | NC_031925_p30 | hypothetical protein | phrog_2010 | unknown function | unknown function | -1 | 14630 | 14839 |
| YP_009322857.1 | NC_031925_p50 | tape measure protein | phrog_1538 | tail length tape measure protein | tail | -1 | 33556 | 35889 |
| YP_009322819.1 | NC_031925_p12 | hypothetical protein | phrog_10956 | unknown function | unknown function | -1 | 9162 | 9344 |
| YP_009322839.1 | NC_031925_p32 | UvsX-like protein | phrog_5169 | unknown function | unknown function | 1 | 15891 | 16124 |
| YP_009322861.1 | NC_031925_p54 | calcineurin-like phosphoesterase superfamily domain protein | phrog_704 | DNA repair exonuclease | DNA, RNA and nucleotide metabolism | 1 | 37075 | 38205 |
| YP_009322810.1 | NC_031925_p3 | i-Spanin | phrog_5672 | Rz-like spanin | lysis | -1 | 1694 | 1837 |
| YP_009322858.1 | NC_031925_p51 | hypothetical protein | phrog_4557 | unknown function | unknown function | -1 | 35882 | 36241 |
| YP_009322813.1 | NC_031925_p6 | tail protein | phrog_3945 | Hoc-like head decoration | head and packaging | -1 | 2515 | 2964 |
| YP_009322814.1 | NC_031925_p7 | head morphogenesis protein | phrog_241 | head morphogenesis | head and packaging | -1 | 2967 | 4826 |
| YP_009322812.1 | NC_031925_p5 | hypothetical protein | phrog_14923 | unknown function | unknown function | -1 | 2233 | 2352 |
| YP_009322811.1 | NC_031925_p4 | o-Spanin | phrog_2536 | Rz-like spanin | lysis | -1 | 1803 | 2189 |
| YP_009322817.1 | NC_031925_p10 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | -1 | 7174 | 8445 |
| YP_009322821.1 | NC_031925_p14 | hypothetical protein | phrog_268 | unknown function | unknown function | -1 | 9656 | 9883 |
| YP_009322831.1 | NC_031925_p24 | hypothetical protein | phrog_4947 | unknown function | unknown function | -1 | 12489 | 12854 |
| YP_009322827.1 | NC_031925_p20 | lysozyme | phrog_7 | endolysin | lysis | -1 | 10930 | 11418 |
| YP_009322871.1 | NC_031925_p64 | hoc protein | phrog_4069 | Hoc-like head decoration | head and packaging | -1 | 42929 | 43279 |
| YP_009322836.1 | NC_031925_p29 | hypothetical protein | phrog_15836 | unknown function | unknown function | -1 | 14456 | 14611 |
| YP_009322834.1 | NC_031925_p27 | hypothetical protein | singleton | unknown function | unknown function | -1 | 13777 | 13890 |
| YP_009322842.1 | NC_031925_p35 | hypothetical protein | phrog_3127 | unknown function | unknown function | 1 | 18733 | 19269 |
| YP_009322829.1 | NC_031925_p22 | hypothetical protein | phrog_2359 | holin | lysis | -1 | 11688 | 12014 |
| YP_009322860.1 | NC_031925_p53 | hypothetical protein | phrog_1039 | immunity to superinfection | moron, auxiliary metabolic gene and host takeover | 1 | 36833 | 37012 |
| YP_009322868.1 | NC_031925_p61 | neck protein | phrog_3614 | unknown function | unknown function | -1 | 41583 | 42188 |
| YP_009322808.1 | NC_031925_p1 | coat protein | phrog_247 | major head protein | head and packaging | -1 | 53 | 904 |
| YP_009322843.1 | NC_031925_p36 | hypothetical protein | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 19311 | 20741 |
| YP_009322828.1 | NC_031925_p21 | holin | phrog_2508 | holin | lysis | -1 | 11399 | 11686 |
| YP_009322833.1 | NC_031925_p26 | hypothetical protein | phrog_6094 | unknown function | unknown function | -1 | 13248 | 13784 |
| YP_009322859.1 | NC_031925_p52 | hypothetical protein | phrog_313 | Tail assembly chaperone | tail | -1 | 36247 | 36663 |
| YP_009322851.1 | NC_031925_p44 | hypothetical protein | phrog_13851 | unknown function | unknown function | 1 | 27224 | 27445 |
| YP_009322845.1 | NC_031925_p38 | intein-containing DNA polymerase precursor | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 21507 | 24605 |
| YP_009322850.1 | NC_031925_p43 | DNA helicase | phrog_62 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 25887 | 27227 |
| YP_009322870.1 | NC_031925_p63 | hypothetical protein | phrog_4451 | unknown function | unknown function | -1 | 42704 | 42892 |
| YP_009322818.1 | NC_031925_p11 | terminase small subunit | phrog_3064 | terminase | head and packaging | -1 | 8435 | 8941 |
| YP_009322862.1 | NC_031925_p55 | hypothetical protein | singleton | unknown function | unknown function | -1 | 38180 | 38581 |
| YP_009322825.1 | NC_031925_p18 | hypothetical protein | phrog_3002 | unknown function | unknown function | -1 | 10405 | 10563 |
| YP_009322823.1 | NC_031925_p16 | hypothetical protein | phrog_1402 | unknown function | unknown function | -1 | 10026 | 10256 |
| YP_009322852.1 | NC_031925_p45 | tail spike protein | phrog_1819 | tail spike protein | tail | -1 | 27564 | 29618 |
| YP_009322853.1 | NC_031925_p46 | tail fiber protein | phrog_469 | tail protein | tail | -1 | 29631 | 32105 |
| YP_009322809.1 | NC_031925_p2 | scaffold protein | phrog_206 | head scaffolding protein | head and packaging | -1 | 908 | 1609 |
| YP_009322838.1 | NC_031925_p31 | transcriptional regulator | phrog_66 | excisionase and transcriptional regulator | integration and excision | 1 | 15724 | 15894 |
| YP_009322830.1 | NC_031925_p23 | hypothetical protein | phrog_1040 | peptidase HslV family | other | -1 | 12049 | 12483 |
| YP_009322840.1 | NC_031925_p33 | replicative helicase primase | phrog_3228 | replicative helicase-primase | DNA, RNA and nucleotide metabolism | 1 | 16181 | 18367 |
| YP_009322866.1 | NC_031925_p59 | tail protein | phrog_169 | tail completion or Neck1 protein | connector | -1 | 40832 | 41227 |