| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_031936 |
Definition |
Gordonia phage GAL1, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Galunavirus; Gordonia virus GAL1. |
DB of origin |
REFSEQ |
Length |
49979 |
Host Name |
Gordonia alkanivorans |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
82 |
%GC |
63.54 |
Number of singletons |
8 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009324453.1 | NC_031936_p61 | hypothetical protein | phrog_26835 | unknown function | unknown function | 1 | 40090 | 40473 |
| YP_009324422.1 | NC_031936_p30 | hypothetical protein | phrog_18370 | unknown function | unknown function | 1 | 26783 | 27679 |
| YP_009324446.1 | NC_031936_p54 | hypothetical protein | phrog_740 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 37553 | 37900 |
| YP_009324395.1 | NC_031936_p3 | hypothetical protein | phrog_32749 | unknown function | unknown function | 1 | 1300 | 1620 |
| YP_009324416.1 | NC_031936_p24 | hypothetical protein | phrog_8672 | unknown function | unknown function | 1 | 20564 | 20953 |
| YP_009324408.1 | NC_031936_p16 | tail assembly protein | phrog_2624 | tail assembly chaperone | tail | 1 | 10786 | 11669 |
| YP_009324423.1 | NC_031936_p31 | integrase | phrog_1 | integrase | integration and excision | 1 | 28103 | 29317 |
| YP_009324472.1 | NC_031936_p80 | hypothetical protein | phrog_1271 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 48654 | 49394 |
| YP_009324468.1 | NC_031936_p76 | hypothetical protein | singleton | unknown function | unknown function | 1 | 47220 | 47414 |
| YP_009324412.1 | NC_031936_p20 | hypothetical protein | phrog_110 | minor tail protein | tail | 1 | 16985 | 18748 |
| YP_009324458.1 | NC_031936_p66 | hypothetical protein | phrog_2164 | unknown function | unknown function | 1 | 42130 | 42576 |
| YP_009324399.1 | NC_031936_p7 | hypothetical protein | phrog_4708 | head scaffolding protein | head and packaging | 1 | 5721 | 6392 |
| YP_009324415.1 | NC_031936_p23 | holin | phrog_443 | holin | lysis | 1 | 20309 | 20548 |
| YP_009324435.1 | NC_031936_p43 | hypothetical protein | phrog_9213 | unknown function | unknown function | 1 | 33971 | 34180 |
| YP_009324474.1 | NC_031936_p82 | hypothetical protein | phrog_144 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 49576 | 49935 |
| YP_009324428.1 | NC_031936_p36 | hypothetical protein | singleton | unknown function | unknown function | 1 | 31738 | 31854 |
| YP_009324424.1 | NC_031936_p32 | hypothetical protein | singleton | unknown function | unknown function | 1 | 29450 | 29785 |
| YP_009324440.1 | NC_031936_p48 | hypothetical protein | phrog_35585 | unknown function | unknown function | 1 | 35018 | 35191 |
| YP_009324459.1 | NC_031936_p67 | hypothetical protein | phrog_3171 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 42573 | 43475 |
| YP_009324448.1 | NC_031936_p56 | DNA methyltransferase | phrog_67 | DNA methyltransferase | other | 1 | 38270 | 38929 |
| YP_009324398.1 | NC_031936_p6 | hypothetical protein | phrog_1522 | head maturation protease | head and packaging | 1 | 4710 | 5651 |
| YP_009324402.1 | NC_031936_p10 | hypothetical protein | phrog_6587 | head-tail connector protein | connector | 1 | 7852 | 8169 |
| YP_009324462.1 | NC_031936_p70 | hypothetical protein | phrog_27870 | unknown function | unknown function | 1 | 44202 | 44411 |
| YP_009324401.1 | NC_031936_p9 | hypothetical protein | phrog_29 | major head protein | head and packaging | 1 | 6815 | 7852 |
| YP_009324444.1 | NC_031936_p52 | hypothetical protein | singleton | unknown function | unknown function | 1 | 36181 | 36321 |
| YP_009324465.1 | NC_031936_p73 | hypothetical protein | phrog_24257 | unknown function | unknown function | 1 | 45602 | 45817 |
| YP_009324439.1 | NC_031936_p47 | hypothetical protein | phrog_23212 | unknown function | unknown function | 1 | 34770 | 35021 |
| YP_009324463.1 | NC_031936_p71 | hypothetical protein | phrog_236 | nucleotide kinase | other | 1 | 44515 | 45402 |
| YP_009324426.1 | NC_031936_p34 | hypothetical protein | phrog_130 | anti-repressor Ant | transcription regulation | 1 | 30600 | 31448 |
| YP_009324457.1 | NC_031936_p65 | hypothetical protein | singleton | unknown function | unknown function | 1 | 42011 | 42133 |
| YP_009324434.1 | NC_031936_p42 | hypothetical protein | phrog_66 | excisionase and transcriptional regulator | integration and excision | 1 | 33753 | 33974 |
| YP_009324437.1 | NC_031936_p45 | hypothetical protein | phrog_7723 | unknown function | unknown function | 1 | 34356 | 34607 |
| YP_009324394.1 | NC_031936_p2 | hypothetical protein | phrog_226 | minor tail protein | tail | 1 | 720 | 1169 |
| YP_009324397.1 | NC_031936_p5 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 3245 | 4624 |
| YP_009324471.1 | NC_031936_p79 | hypothetical protein | phrog_19157 | unknown function | unknown function | 1 | 48135 | 48575 |
| YP_009324443.1 | NC_031936_p51 | hypothetical protein | phrog_23738 | unknown function | unknown function | 1 | 35588 | 36184 |
| YP_009324432.1 | NC_031936_p40 | hypothetical protein | phrog_17603 | unknown function | unknown function | 1 | 33170 | 33433 |
| YP_009324418.1 | NC_031936_p26 | hypothetical protein | phrog_102 | endolysin | lysis | 1 | 21339 | 22043 |
| YP_009324451.1 | NC_031936_p59 | hypothetical protein | phrog_33915 | unknown function | unknown function | 1 | 39705 | 39854 |
| YP_009324455.1 | NC_031936_p63 | hypothetical protein | phrog_31992 | unknown function | unknown function | 1 | 40966 | 41148 |
| YP_009324473.1 | NC_031936_p81 | hypothetical protein | phrog_6439 | unknown function | unknown function | 1 | 49391 | 49576 |
| YP_009324470.1 | NC_031936_p78 | hypothetical protein | phrog_24399 | unknown function | unknown function | 1 | 47825 | 48118 |
| YP_009324405.1 | NC_031936_p13 | hypothetical protein | phrog_5210 | neck protein | connector | 1 | 8895 | 9233 |
| YP_009324452.1 | NC_031936_p60 | hypothetical protein | phrog_16479 | unknown function | unknown function | 1 | 39851 | 40093 |
| YP_009324445.1 | NC_031936_p53 | WhiB family regulatory protein | phrog_1590 | unknown function | unknown function | 1 | 36318 | 37556 |
| YP_009324414.1 | NC_031936_p22 | lysin | phrog_2998 | endolysin | lysis | 1 | 19182 | 20282 |
| YP_009324450.1 | NC_031936_p58 | hypothetical protein | phrog_780 | unknown function | unknown function | 1 | 39448 | 39708 |
| YP_009324411.1 | NC_031936_p19 | hypothetical protein | phrog_106 | minor tail protein | tail | 1 | 16068 | 16979 |
| YP_009324429.1 | NC_031936_p37 | hypothetical protein | singleton | unknown function | unknown function | 1 | 31854 | 31991 |
| YP_009324461.1 | NC_031936_p69 | hypothetical protein | phrog_34 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 43840 | 44205 |
| YP_009324430.1 | NC_031936_p38 | hypothetical protein | phrog_12920 | unknown function | unknown function | 1 | 32000 | 32320 |
| YP_009324410.1 | NC_031936_p18 | tape measure protein | phrog_4197 | tail length tape measure protein | tail | 1 | 11671 | 16068 |
| YP_009324403.1 | NC_031936_p11 | hypothetical protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 8169 | 8561 |
| YP_009324447.1 | NC_031936_p55 | hypothetical protein | singleton | unknown function | unknown function | 1 | 38002 | 38268 |
| YP_009324467.1 | NC_031936_p75 | hypothetical protein | phrog_908 | unknown function | unknown function | 1 | 46097 | 46876 |
| YP_009324404.1 | NC_031936_p12 | hypothetical protein | phrog_5309 | head-tail adaptor | connector | 1 | 8558 | 8902 |
| YP_009324409.1 | NC_031936_p17 | tail assembly protein | phrog_33196 | tail assembly chaperone | tail | 1 | 10786 | 11244 |
| YP_009324400.1 | NC_031936_p8 | hypothetical protein | phrog_3583 | head decoration | head and packaging | 1 | 6396 | 6800 |
| YP_009324469.1 | NC_031936_p77 | hypothetical protein | phrog_6676 | unknown function | unknown function | 1 | 47436 | 47828 |
| YP_009324421.1 | NC_031936_p29 | hypothetical protein | phrog_31597 | unknown function | unknown function | 1 | 24641 | 26770 |
| YP_009324419.1 | NC_031936_p27 | hypothetical protein | phrog_1492 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 22156 | 22695 |
| YP_009324425.1 | NC_031936_p33 | hypothetical protein | phrog_19579 | transcriptional regulator | transcription regulation | -1 | 29687 | 30364 |
| YP_009324417.1 | NC_031936_p25 | hypothetical protein | phrog_11860 | unknown function | unknown function | 1 | 20950 | 21339 |
| YP_009324393.1 | NC_031936_p1 | hypothetical protein | singleton | unknown function | unknown function | 1 | 51 | 593 |
| YP_009324420.1 | NC_031936_p28 | hypothetical protein | phrog_2689 | minor tail protein | tail | 1 | 22722 | 24629 |
| YP_009324436.1 | NC_031936_p44 | hypothetical protein | phrog_35290 | unknown function | unknown function | 1 | 34177 | 34359 |
| YP_009324466.1 | NC_031936_p74 | hypothetical protein | phrog_24327 | unknown function | unknown function | 1 | 45814 | 46038 |
| YP_009324396.1 | NC_031936_p4 | large terminase subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 1617 | 3242 |
| YP_009324454.1 | NC_031936_p62 | hypothetical protein | phrog_1138 | unknown function | unknown function | 1 | 40466 | 40969 |
| YP_009324441.1 | NC_031936_p49 | hypothetical protein | phrog_31304 | unknown function | unknown function | 1 | 35188 | 35370 |
| YP_009324460.1 | NC_031936_p68 | hypothetical protein | phrog_4296 | unknown function | unknown function | 1 | 43472 | 43843 |
| YP_009324442.1 | NC_031936_p50 | hypothetical protein | phrog_26188 | unknown function | unknown function | 1 | 35370 | 35588 |
| YP_009324407.1 | NC_031936_p15 | major tail protein | phrog_476 | major tail protein | tail | 1 | 9773 | 10699 |
| YP_009324438.1 | NC_031936_p46 | hypothetical protein | phrog_1581 | unknown function | unknown function | 1 | 34604 | 34783 |
| YP_009324464.1 | NC_031936_p72 | hypothetical protein | phrog_31933 | unknown function | unknown function | 1 | 45399 | 45611 |
| YP_009324433.1 | NC_031936_p41 | DNA binding protein | phrog_3 | transcriptional repressor | transcription regulation | 1 | 33430 | 33756 |
| YP_009324449.1 | NC_031936_p57 | hypothetical protein | phrog_34595 | unknown function | unknown function | 1 | 38966 | 39451 |
| YP_009324427.1 | NC_031936_p35 | hypothetical protein | phrog_3642 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 31502 | 31741 |
| YP_009324456.1 | NC_031936_p64 | DNA methyltransferase | phrog_111 | DNA methyltransferase | other | 1 | 41145 | 41696 |
| YP_009324431.1 | NC_031936_p39 | hypothetical protein | phrog_130 | anti-repressor Ant | transcription regulation | 1 | 32334 | 33173 |
| YP_009324406.1 | NC_031936_p14 | hypothetical protein | phrog_32820 | unknown function | unknown function | 1 | 9230 | 9691 |
| YP_009324413.1 | NC_031936_p21 | hypothetical protein | phrog_17401 | unknown function | unknown function | 1 | 18745 | 19113 |